RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 CLHC1Q8NHS4 586 aa20.43■□□□□ 0.86
PTPRF-207ENST00000436724 WDR20Q8TBZ3 569 aa20.43■□□□□ 0.86
PTPRF-207ENST00000436724 ECSITQ9BQ95 431 aa20.43■□□□□ 0.86
PTPRF-207ENST00000436724 SGPP1Q9BX95 441 aa20.43■□□□□ 0.86
PTPRF-207ENST00000436724 ITM2CQ9NQX7 267 aa20.43■□□□□ 0.86
PTPRF-207ENST00000436724 BBIP1A8MTZ0 92 aa20.42■□□□□ 0.86
PTPRF-207ENST00000436724 PAGE3Q5JUK9 113 aa20.42■□□□□ 0.86
PTPRF-207ENST00000436724 SLCO4C1Q6ZQN7 724 aa20.42■□□□□ 0.86
PTPRF-207ENST00000436724 ZFAND4Q86XD8 727 aa20.42■□□□□ 0.86
PTPRF-207ENST00000436724 APIPQ96GX9 242 aa20.42■□□□□ 0.86
PTPRF-207ENST00000436724 MSANTD3Q96H12 275 aa20.42■□□□□ 0.86
PTPRF-207ENST00000436724 BMFQ96LC9 184 aa20.42■□□□□ 0.86
PTPRF-207ENST00000436724 SERPINI1Q99574 410 aa20.42■□□□□ 0.86
PTPRF-207ENST00000436724 DLGAP2Q9P1A6 1054 aa20.42■□□□□ 0.86
PTPRF-207ENST00000436724 CROTQ9UKG9 612 aa20.42■□□□□ 0.86
PTPRF-207ENST00000436724 EIF3LQ9Y262 564 aaKnown RBP20.42■□□□□ 0.86
PTPRF-207ENST00000436724 DLGAP4Q9Y2H0 992 aa20.42■□□□□ 0.86
PTPRF-207ENST00000436724 A0A1W2PP18 115 aa20.42■□□□□ 0.86
PTPRF-207ENST00000436724 CCDC154A6NI56 674 aa20.42■□□□□ 0.86
PTPRF-207ENST00000436724 SH3BGRLO75368 114 aa20.42■□□□□ 0.86
PTPRF-207ENST00000436724 FOSL2P15408 326 aa20.42■□□□□ 0.86
PTPRF-207ENST00000436724 ATXN3P54252 364 aaPredicted RBP20.42■□□□□ 0.86
PTPRF-207ENST00000436724 IRX1P78414 480 aaPredicted RBP20.42■□□□□ 0.86
PTPRF-207ENST00000436724 DMPKQ09013 629 aa20.42■□□□□ 0.86
PTPRF-207ENST00000436724 CAPRIN1Q14444 709 aaKnown RBP20.42■□□□□ 0.86
PTPRF-207ENST00000436724 THEMIS2Q5TEJ8 643 aa20.42■□□□□ 0.86
PTPRF-207ENST00000436724 GRHL2Q6ISB3 625 aa20.42■□□□□ 0.86
PTPRF-207ENST00000436724 C8orf82Q6P1X6 216 aaPredicted RBP20.42■□□□□ 0.86
PTPRF-207ENST00000436724 ZNF852Q6ZMS4 543 aa20.42■□□□□ 0.86
PTPRF-207ENST00000436724 TRIM69Q86WT6 500 aa20.42■□□□□ 0.86
PTPRF-207ENST00000436724 PCYOX1LQ8NBM8 494 aa20.42■□□□□ 0.86
PTPRF-207ENST00000436724 SLC26A7Q8TE54 656 aa20.42■□□□□ 0.86
PTPRF-207ENST00000436724 PDXPQ96GD0 296 aa20.42■□□□□ 0.86
PTPRF-207ENST00000436724 C12orf66Q96MD2 445 aa20.42■□□□□ 0.86
PTPRF-207ENST00000436724 INSM2Q96T92 566 aaPredicted RBP20.42■□□□□ 0.86
PTPRF-207ENST00000436724 ACAT2Q9BWD1 397 aa20.42■□□□□ 0.86
PTPRF-207ENST00000436724 TRIM8Q9BZR9 551 aa20.42■□□□□ 0.86
PTPRF-207ENST00000436724 CAAP1Q9H8G2 361 aa20.42■□□□□ 0.86
PTPRF-207ENST00000436724 SGK2Q9HBY8 427 aa20.42■□□□□ 0.86
PTPRF-207ENST00000436724 CCDC177Q9NQR7 707 aaPredicted RBP20.42■□□□□ 0.86
PTPRF-207ENST00000436724 FAM234BA2RU67 622 aa20.41■□□□□ 0.86
PTPRF-207ENST00000436724 KELP23276 732 aa20.41■□□□□ 0.86
PTPRF-207ENST00000436724 CASP2P42575 452 aa20.41■□□□□ 0.86
PTPRF-207ENST00000436724 DGKQP52824 942 aa20.41■□□□□ 0.86
PTPRF-207ENST00000436724 MS4A2Q01362 244 aa20.41■□□□□ 0.86
PTPRF-207ENST00000436724 KRTCAP2Q8N6L1 136 aa20.41■□□□□ 0.86
PTPRF-207ENST00000436724 ASB12Q8WXK4 309 aa20.41■□□□□ 0.86
PTPRF-207ENST00000436724 TIMM29Q9BSF4 260 aa20.41■□□□□ 0.86
PTPRF-207ENST00000436724 CARS2Q9HA77 564 aaKnown RBP20.41■□□□□ 0.86
PTPRF-207ENST00000436724 SLAMF8Q9P0V8 285 aa20.41■□□□□ 0.86
PTPRF-207ENST00000436724 ACSL5Q9ULC5 683 aa20.41■□□□□ 0.86
PTPRF-207ENST00000436724 PRSS38A1L453 326 aa20.41■□□□□ 0.86
PTPRF-207ENST00000436724 LRRC72A6NJI9 287 aa20.41■□□□□ 0.86
PTPRF-207ENST00000436724 FXYD1O00168 92 aa20.41■□□□□ 0.86
PTPRF-207ENST00000436724 FPGTO14772 594 aa20.41■□□□□ 0.86
PTPRF-207ENST00000436724 BCKDHAP12694 445 aa20.41■□□□□ 0.86
PTPRF-207ENST00000436724 MEF2AQ02078 507 aaPredicted RBP20.41■□□□□ 0.86
PTPRF-207ENST00000436724 SFSWAPQ12872 951 aaKnown RBP20.41■□□□□ 0.86
PTPRF-207ENST00000436724 GAS6Q14393 721 aa20.41■□□□□ 0.86
PTPRF-207ENST00000436724 CLCA4Q14CN2 919 aa20.41■□□□□ 0.86
PTPRF-207ENST00000436724 OR52E8Q6IFG1 317 aa20.41■□□□□ 0.86
PTPRF-207ENST00000436724 ENPP7Q6UWV6 458 aa20.41■□□□□ 0.86
PTPRF-207ENST00000436724 RD3Q7Z3Z2 195 aa20.41■□□□□ 0.86
PTPRF-207ENST00000436724 FRMD1Q8N878 549 aa20.41■□□□□ 0.86
PTPRF-207ENST00000436724 RMI1Q9H9A7 625 aa20.41■□□□□ 0.86
PTPRF-207ENST00000436724 LMAN1LQ9HAT1 526 aa20.41■□□□□ 0.86
PTPRF-207ENST00000436724 SPAG4Q9NPE6 437 aa20.41■□□□□ 0.86
PTPRF-207ENST00000436724 IMP3Q9NV31 184 aaKnown RBP20.41■□□□□ 0.86
PTPRF-207ENST00000436724 USP36Q9P275 1121 aaKnown RBP20.41■□□□□ 0.86
PTPRF-207ENST00000436724 GMPR2Q9P2T1 348 aaKnown RBP20.41■□□□□ 0.86
PTPRF-207ENST00000436724 PNMA8BQ9ULN7 279 aaPredicted RBP20.41■□□□□ 0.86
PTPRF-207ENST00000436724 DUSP12Q9UNI6 340 aa20.41■□□□□ 0.86
PTPRF-207ENST00000436724 CYP8B1Q9UNU6 501 aa20.41■□□□□ 0.86
PTPRF-207ENST00000436724 OR52A4PA6NMU1 304 aa20.4■□□□□ 0.86
PTPRF-207ENST00000436724 H0YIV9 168 aa20.4■□□□□ 0.86
PTPRF-207ENST00000436724 MAN2B1O00754 1011 aa20.4■□□□□ 0.86
PTPRF-207ENST00000436724 SEMA4FO95754 770 aa20.4■□□□□ 0.86
PTPRF-207ENST00000436724 HNRNPA2B1P22626 353 aaKnown RBP20.4■□□□□ 0.86
PTPRF-207ENST00000436724 HNF4AP41235 474 aa20.4■□□□□ 0.86
PTPRF-207ENST00000436724 SLC7A2P52569 658 aa20.4■□□□□ 0.86
PTPRF-207ENST00000436724 MAD2L1Q13257 205 aaPredicted RBP20.4■□□□□ 0.86
PTPRF-207ENST00000436724 TLR1Q15399 786 aa20.4■□□□□ 0.86
PTPRF-207ENST00000436724 LEXMQ3ZCV2 418 aa20.4■□□□□ 0.86
PTPRF-207ENST00000436724 USP39Q53GS9 565 aaKnown RBP20.4■□□□□ 0.86
PTPRF-207ENST00000436724 HACD2Q6Y1H2 254 aa20.4■□□□□ 0.86
PTPRF-207ENST00000436724 DHDDSQ86SQ9 333 aa20.4■□□□□ 0.86
PTPRF-207ENST00000436724 ZNF687Q8N1G0 1237 aa20.4■□□□□ 0.86
PTPRF-207ENST00000436724 OR7G3Q8NG95 312 aa20.4■□□□□ 0.86
PTPRF-207ENST00000436724 OR1E3Q8WZA6 343 aa20.4■□□□□ 0.86
PTPRF-207ENST00000436724 ROPN1LQ96C74 230 aa20.4■□□□□ 0.86
PTPRF-207ENST00000436724 MENTQ9BUN1 341 aa20.4■□□□□ 0.86
PTPRF-207ENST00000436724 SPNS1Q9H2V7 528 aa20.4■□□□□ 0.86
PTPRF-207ENST00000436724 C6orf106Q9H6K1 298 aaPredicted RBP20.4■□□□□ 0.86
PTPRF-207ENST00000436724 POLMQ9NP87 494 aaPredicted RBP20.4■□□□□ 0.86
PTPRF-207ENST00000436724 PRDM8Q9NQV8 689 aa20.4■□□□□ 0.86
PTPRF-207ENST00000436724 PCM1Q15154 2024 aa20.4■□□□□ 0.86
PTPRF-207ENST00000436724 PRAMEF33A0A0G2JMD5 474 aa20.39■□□□□ 0.86
PTPRF-207ENST00000436724 PRORSD1PA6NEY8 169 aa20.39■□□□□ 0.86
PTPRF-207ENST00000436724 MAGEB17A8MXT2 336 aa20.39■□□□□ 0.86
PTPRF-207ENST00000436724 ETHE1O95571 254 aa20.39■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms