RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 WDFY4Q6ZS81 3184 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 RP1P56715 2156 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 IGHV1OR21-1A0A087WYE8 117 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 A0A0J9YY10 115 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 KLF11O14901 512 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 CAPN5O15484 640 aaPredicted RBP9.75□□□□□ -0.85
CD44-207ENST00000425428 TAPBPO15533 448 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 SIX3O95343 332 aaPredicted RBP9.75□□□□□ -0.85
CD44-207ENST00000425428 CLDN9O95484 217 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 RPLP0P05388 317 aaKnown RBP9.75□□□□□ -0.85
CD44-207ENST00000425428 EBLN1P0CF75 366 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 GIMD1P0DJR0 217 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 CD59P13987 128 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 HMOX2P30519 316 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 HNF4AP41235 474 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 GDF5P43026 501 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 SLC6A12P48065 614 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 SLC1A6P48664 564 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 WDR4P57081 412 aaKnown RBP9.75□□□□□ -0.85
CD44-207ENST00000425428 ABCE1P61221 599 aaKnown RBP9.75□□□□□ -0.85
CD44-207ENST00000425428 PRDX1Q06830 199 aaKnown RBP9.75□□□□□ -0.85
CD44-207ENST00000425428 GALNT1Q10472 559 aaPredicted RBP9.75□□□□□ -0.85
CD44-207ENST00000425428 MPP2Q14168 576 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 FASTKQ14296 549 aaKnown RBP9.75□□□□□ -0.85
CD44-207ENST00000425428 GRB7Q14451 532 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 NR1D2Q14995 579 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 CCDC157Q569K6 752 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 LIPJQ5W064 366 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 WDR74Q6RFH5 385 aaPredicted RBP9.75□□□□□ -0.85
CD44-207ENST00000425428 SPESP1Q6UW49 350 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 GPRIN3Q6ZVF9 776 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 GOLGA7Q7Z5G4 137 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 SPRED1Q7Z699 444 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 TMPRSS11BQ86T26 416 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 KLHDC8AQ8IYD2 350 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 ADGRF3Q8IZF5 1079 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 TMEM151AQ8N4L1 468 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 CHCHD4Q8N4Q1 142 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 ZNF655Q8N720 491 aaPredicted RBP9.75□□□□□ -0.85
CD44-207ENST00000425428 TRPC4APQ8TEL6 797 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 ZNF75CPQ92670 426 aaPredicted RBP9.75□□□□□ -0.85
CD44-207ENST00000425428 ZUFSPQ96AP4 578 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 ESAMQ96AP7 390 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 FAR2Q96K12 515 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 TGM7Q96PF1 710 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 TMEM79Q9BSE2 394 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 EFCAB11Q9BUY7 163 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 NLNQ9BYT8 704 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 PITHD1Q9GZP4 211 aaPredicted RBP9.75□□□□□ -0.85
CD44-207ENST00000425428 NOL11Q9H8H0 719 aaKnown RBP9.75□□□□□ -0.85
CD44-207ENST00000425428 PELI2Q9HAT8 420 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 MID1IP1Q9NPA3 183 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 C1GALT1Q9NS00 363 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 PCTPQ9UKL6 214 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 SNX6Q9UNH7 406 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 APOBEC2Q9Y235 224 aaKnown RBP9.75□□□□□ -0.85
CD44-207ENST00000425428 BTBD3Q9Y2F9 522 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 HEATR5BQ9P2D3 2071 aa9.74□□□□□ -0.85
CD44-207ENST00000425428 GPR179Q6PRD1 2367 aa9.74□□□□□ -0.85
CD44-207ENST00000425428 PRAMEF33A0A0G2JMD5 474 aa9.74□□□□□ -0.85
CD44-207ENST00000425428 TLCD2A6NGC4 264 aa9.74□□□□□ -0.85
CD44-207ENST00000425428 SLCO1B7G3V0H7 640 aa9.74□□□□□ -0.85
CD44-207ENST00000425428 E2F3O00716 465 aa9.74□□□□□ -0.85
CD44-207ENST00000425428 KRT6AP02538 564 aa9.74□□□□□ -0.85
CD44-207ENST00000425428 KRT6BP04259 564 aa9.74□□□□□ -0.85
CD44-207ENST00000425428 ENO1P06733 434 aaKnown RBP9.74□□□□□ -0.85
CD44-207ENST00000425428 VIMP08670 466 aaKnown RBP9.74□□□□□ -0.85
CD44-207ENST00000425428 RPS17P08708 135 aaKnown RBP9.74□□□□□ -0.85
CD44-207ENST00000425428 SBK3P0C264 359 aa9.74□□□□□ -0.85
CD44-207ENST00000425428 HGFP14210 728 aa9.74□□□□□ -0.85
CD44-207ENST00000425428 UGT2B7P16662 529 aa9.74□□□□□ -0.85
CD44-207ENST00000425428 NPPBP16860 134 aa9.74□□□□□ -0.85
CD44-207ENST00000425428 PRDX3P30048 256 aaKnown RBP9.74□□□□□ -0.85
CD44-207ENST00000425428 KRT6CP48668 564 aa9.74□□□□□ -0.85
CD44-207ENST00000425428 HK2P52789 917 aa9.74□□□□□ -0.85
CD44-207ENST00000425428 IFT88Q13099 833 aa9.74□□□□□ -0.85
CD44-207ENST00000425428 CHIT1Q13231 466 aa9.74□□□□□ -0.85
CD44-207ENST00000425428 TRIP6Q15654 476 aaKnown RBP9.74□□□□□ -0.85
CD44-207ENST00000425428 FBXO48Q5FWF7 155 aa9.74□□□□□ -0.85
CD44-207ENST00000425428 ZC3H12BQ5HYM0 836 aaKnown RBP9.74□□□□□ -0.85
CD44-207ENST00000425428 C10orf62Q5T681 223 aaPredicted RBP9.74□□□□□ -0.85
CD44-207ENST00000425428 CACHD1Q5VU97 1274 aa9.74□□□□□ -0.85
CD44-207ENST00000425428 TMEM71Q6P5X7 295 aa9.74□□□□□ -0.85
CD44-207ENST00000425428 FRMD7Q6ZUT3 714 aa9.74□□□□□ -0.85
CD44-207ENST00000425428 ASCL5Q7RTU5 278 aa9.74□□□□□ -0.85
CD44-207ENST00000425428 SPNS2Q8IVW8 549 aa9.74□□□□□ -0.85
CD44-207ENST00000425428 KIAA2013Q8IYS2 634 aa9.74□□□□□ -0.85
CD44-207ENST00000425428 LMNTD1Q8N9Z9 388 aa9.74□□□□□ -0.85
CD44-207ENST00000425428 TTLQ8NG68 377 aa9.74□□□□□ -0.85
CD44-207ENST00000425428 OR2L3Q8NG85 312 aa9.74□□□□□ -0.85
CD44-207ENST00000425428 ZNF483Q8TF39 744 aaPredicted RBP9.74□□□□□ -0.85
CD44-207ENST00000425428 CKAP2Q8WWK9 683 aa9.74□□□□□ -0.85
CD44-207ENST00000425428 PTCD3Q96EY7 689 aaKnown RBP9.74□□□□□ -0.85
CD44-207ENST00000425428 CENPKQ9BS16 269 aa9.74□□□□□ -0.85
CD44-207ENST00000425428 GATA5Q9BWX5 397 aaPredicted RBP9.74□□□□□ -0.85
CD44-207ENST00000425428 SEMA6CQ9H3T2 930 aa9.74□□□□□ -0.85
CD44-207ENST00000425428 EHD1Q9H4M9 534 aa9.74□□□□□ -0.85
CD44-207ENST00000425428 CAAP1Q9H8G2 361 aa9.74□□□□□ -0.85
CD44-207ENST00000425428 FANCEQ9HB96 536 aa9.74□□□□□ -0.85
CD44-207ENST00000425428 TMEM184CQ9NVA4 438 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms