RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 EPCAMP16422 314 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 TNFSF4P23510 183 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 IL23RQ5VWK5 629 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 G6PC3Q9BUM1 346 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 EBPLQ9BY08 206 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 RMI1Q9H9A7 625 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 ENTPD6O75354 484 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 ATP6AP2O75787 350 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 ANGPTL1O95841 491 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 IFNA2P01563 188 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 BRCC3P46736 316 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 RPL5P46777 297 aaKnown RBP6.7□□□□□ -1.34
SCN1A-204ENST00000423058 DHCR24Q15392 516 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 GPR68Q15743 365 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 TIGD2Q4W5G0 525 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 RALGPS1Q5JS13 557 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 PRAMEF14Q5SWL7 426 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 PRAMEF13Q5VWM6 474 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 NYAP1Q6ZVC0 841 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 SPATA6LQ8N4H0 392 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 SIDT2Q8NBJ9 832 aaKnown RBP6.7□□□□□ -1.34
SCN1A-204ENST00000423058 OR5M3Q8NGP4 307 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 OR52J3Q8NH60 311 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 GRPEL2Q8TAA5 225 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 C22orf15Q8WYQ4 148 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 FAM83CQ9BQN1 747 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 TMEM175Q9BSA9 504 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 KCNMB3Q9NPA1 279 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 RNF19AQ9NV58 838 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 GPRC5BQ9NZH0 403 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 MLXQ9UH92 298 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 C15orf41Q9Y2V0 281 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 PEX16Q9Y5Y5 336 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 CDC7O00311 574 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 NADKO95544 446 aaPredicted RBP6.7□□□□□ -1.34
SCN1A-204ENST00000423058 BMP4P12644 408 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 SLC6A6P31641 620 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 ADRA1BP35368 520 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 TNFSF9P41273 254 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 XKP51811 444 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 SMSP52788 366 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 CLCQ05315 142 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 RBPJQ06330 500 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 PLGLAQ15195 96 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 LINGO4Q6UY18 593 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 ZNF100Q8IYN0 542 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 CNTD1Q8N815 330 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 PCDH19Q8TAB3 1148 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 GTPBP3Q969Y2 492 aaKnown RBP6.7□□□□□ -1.34
SCN1A-204ENST00000423058 ELMO3Q96BJ8 720 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 TMCO6Q96DC7 493 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 NLGN3Q9NZ94 848 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 RAD51DO75771 328 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 ZNF8P17098 575 aaPredicted RBP6.7□□□□□ -1.34
SCN1A-204ENST00000423058 CD40LGP29965 261 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 IFI35P80217 286 aaPredicted RBP6.7□□□□□ -1.34
SCN1A-204ENST00000423058 FAM214AQ32MH5 1076 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 GPR33Q49SQ1 333 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 OR7D4Q8NG98 312 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 ELP5Q8TE02 316 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 GEMIN6Q8WXD5 167 aaKnown RBP6.7□□□□□ -1.34
SCN1A-204ENST00000423058 SMARCD2Q92925 531 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 KLHDC7BQ96G42 594 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 CD180Q99467 661 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 ANKRA2Q9H9E1 313 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 CHST7Q9NS84 486 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 ARID1BQ8NFD5 2236 aaPredicted RBP6.7□□□□□ -1.34
SCN1A-204ENST00000423058 BCKDHAP12694 445 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 EDNRAP25101 427 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 L1CAMP32004 1257 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 PRKCIP41743 596 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 SLC25A3Q00325 362 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 TMEM225Q6GV28 225 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 GDF6Q6KF10 455 aaPredicted RBP6.7□□□□□ -1.34
SCN1A-204ENST00000423058 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.7□□□□□ -1.34
SCN1A-204ENST00000423058 GRHL3Q8TE85 626 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 KLK6Q92876 244 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 SLC35C1Q96A29 364 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 CADM1Q9BY67 442 aaKnown RBP6.7□□□□□ -1.34
SCN1A-204ENST00000423058 MS4A12Q9NXJ0 267 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 KCNS2Q9ULS6 477 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 ATRNO75882 1429 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 CIB4A0PJX0 185 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 GLTPD2A6NH11 291 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 PRR5-ARHGAP8B1AHC4 643 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 PCDH7O60245 1069 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 GPR37L1O60883 481 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 ZSCAN5DPP0CG00 497 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 HNF1BP35680 557 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 CSTF1Q05048 431 aaKnown RBP6.7□□□□□ -1.34
SCN1A-204ENST00000423058 CBLBQ13191 982 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 RABEPKQ7Z6M1 372 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 THEM6Q8WUY1 208 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 GCDHQ92947 438 aaPredicted RBP6.7□□□□□ -1.34
SCN1A-204ENST00000423058 OR2AG1Q9H205 316 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 ABCB9Q9NP78 766 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 C1orf109Q9NX04 203 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 PRODH2Q9UF12 536 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 PLCL2Q9UPR0 1127 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 TCAF1Q9Y4C2 921 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms