RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 NUFIP1Q9UHK0 495 aaKnown RBP10.41□□□□□ -0.74
USP54-204ENST00000422491 ZMYM5Q9UJ78 669 aa10.41□□□□□ -0.74
USP54-204ENST00000422491 TRMT6Q9UJA5 497 aaKnown RBP10.41□□□□□ -0.74
USP54-204ENST00000422491 SATB2Q9UPW6 733 aa10.41□□□□□ -0.74
USP54-204ENST00000422491 SNX8Q9Y5X2 465 aa10.41□□□□□ -0.74
USP54-204ENST00000422491 DOCK4Q8N1I0 1966 aa10.41□□□□□ -0.74
USP54-204ENST00000422491 RGS14O43566 566 aa10.41□□□□□ -0.74
USP54-204ENST00000422491 B3GALT4O96024 378 aa10.41□□□□□ -0.74
USP54-204ENST00000422491 OTCP00480 354 aa10.41□□□□□ -0.74
USP54-204ENST00000422491 EPOP01588 193 aa10.41□□□□□ -0.74
USP54-204ENST00000422491 PKMP14618 531 aaKnown RBP10.41□□□□□ -0.74
USP54-204ENST00000422491 M6PRP20645 277 aa10.41□□□□□ -0.74
USP54-204ENST00000422491 GGT2P36268 569 aa10.41□□□□□ -0.74
USP54-204ENST00000422491 CDKN2CP42773 168 aa10.41□□□□□ -0.74
USP54-204ENST00000422491 OR3A3P47888 321 aa10.41□□□□□ -0.74
USP54-204ENST00000422491 PXNP49023 591 aaPredicted RBP10.41□□□□□ -0.74
USP54-204ENST00000422491 ITGA1P56199 1179 aa10.41□□□□□ -0.74
USP54-204ENST00000422491 ATCAYQ86WG3 371 aa10.41□□□□□ -0.74
USP54-204ENST00000422491 CCDC28AQ8IWP9 274 aa10.41□□□□□ -0.74
USP54-204ENST00000422491 PGBD3Q8N328 593 aa10.41□□□□□ -0.74
USP54-204ENST00000422491 TMEM132CQ8N3T6 1108 aa10.41□□□□□ -0.74
USP54-204ENST00000422491 FAM109AQ8N4B1 249 aa10.41□□□□□ -0.74
USP54-204ENST00000422491 CLHC1Q8NHS4 586 aa10.41□□□□□ -0.74
USP54-204ENST00000422491 MKRN2Q9H000 416 aaKnown RBP10.41□□□□□ -0.74
USP54-204ENST00000422491 MMP28Q9H239 520 aa10.41□□□□□ -0.74
USP54-204ENST00000422491 IPPKQ9H8X2 491 aa10.41□□□□□ -0.74
USP54-204ENST00000422491 SMURF1Q9HCE7 757 aa10.41□□□□□ -0.74
USP54-204ENST00000422491 PRDM5Q9NQX1 630 aaPredicted RBP10.41□□□□□ -0.74
USP54-204ENST00000422491 FARSBQ9NSD9 589 aaKnown RBP10.41□□□□□ -0.74
USP54-204ENST00000422491 ABCC13Q9NSE7 274 aa10.41□□□□□ -0.74
USP54-204ENST00000422491 MIOSQ9NXC5 875 aa10.41□□□□□ -0.74
USP54-204ENST00000422491 DNMT3LQ9UJW3 386 aa10.41□□□□□ -0.74
USP54-204ENST00000422491 TFECO14948 347 aaPredicted RBP10.4□□□□□ -0.74
USP54-204ENST00000422491 OR1I1O60431 355 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 ZNF780AO75290 641 aaPredicted RBP10.4□□□□□ -0.74
USP54-204ENST00000422491 CYP7B1O75881 506 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 MYCP01106 439 aaPredicted RBP10.4□□□□□ -0.74
USP54-204ENST00000422491 CD9P21926 228 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 NUDT6P53370 316 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 OLR1P78380 273 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 HYAL2Q12891 473 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 TP53BP2Q13625 1128 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 TRIM71Q2Q1W2 868 aaKnown RBP10.4□□□□□ -0.74
USP54-204ENST00000422491 TTLL9Q3SXZ7 439 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 IQCCQ4KMZ1 466 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 USP39Q53GS9 565 aaKnown RBP10.4□□□□□ -0.74
USP54-204ENST00000422491 ALFQ53S48 1182 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 GNASQ5JWF2 1037 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 C10orf62Q5T681 223 aaPredicted RBP10.4□□□□□ -0.74
USP54-204ENST00000422491 CACHD1Q5VU97 1274 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 TRAF7Q6Q0C0 670 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 AFTPHQ6ULP2 937 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 MILR1Q7Z6M3 343 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 GALNT10Q86SR1 603 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 FAM20CQ8IXL6 584 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 CACTIN-AS1Q8N1I8 211 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 CARNMT1Q8N4J0 409 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 TP53I13Q8NBR0 393 aaPredicted RBP10.4□□□□□ -0.74
USP54-204ENST00000422491 OR5H6Q8NGV6 325 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 ASB15Q8WXK1 588 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 KCNC2Q96PR1 638 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 CITED4Q96RK1 184 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 RTP3Q9BQQ7 232 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 REEP1Q9H902 201 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 TOR4AQ9NXH8 423 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 TNPO3Q9Y5L0 923 aaKnown RBP10.4□□□□□ -0.74
USP54-204ENST00000422491 A0A0B4J293 547 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 PDHXO00330 501 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 GFRA2O00451 464 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 C1QCP02747 245 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 C9P02748 559 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 RHOQP17081 205 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 CD72P21854 359 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 NUDT1P36639 197 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 GNPDA1P46926 289 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 PIK3CGP48736 1102 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 VGLL4Q14135 290 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 INO80DQ53TQ3 878 aaPredicted RBP10.4□□□□□ -0.74
USP54-204ENST00000422491 RNF165Q6ZSG1 346 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 ANKRD46Q86W74 232 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 LIX1LQ8IVB5 337 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 PIANPQ8IYJ0 282 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 DEPDC4Q8N2C3 294 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 C3orf58Q8NDZ4 430 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 ZFAND1Q8TCF1 268 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 BHMTQ93088 406 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 RNF31Q96EP0 1072 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 SRRQ9GZT4 340 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 RUBCNLQ9H714 662 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 DYRK4Q9NR20 520 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 AASDHPPTQ9NRN7 309 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 RAD18Q9NS91 495 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 OLA1Q9NTK5 396 aaKnown RBP10.4□□□□□ -0.74
USP54-204ENST00000422491 TMEM248Q9NWD8 314 aa10.4□□□□□ -0.74
USP54-204ENST00000422491 UBA2Q9UBT2 640 aaPredicted RBP10.4□□□□□ -0.74
USP54-204ENST00000422491 A0A1W2PQ09 198 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 PLK4O00444 970 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 FFAR3O14843 346 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 GPR42O15529 346 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 HSMCR30P0CW71 290 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 152 ms