RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 SHISA5Q8N114 240 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 STT3BQ8TCJ2 826 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 TM9SF4Q92544 642 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 ZUFSPQ96AP4 578 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 C10orf90Q96M02 699 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 DPH7Q9BTV6 452 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 RAB11FIP5Q9BXF6 653 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 TSGA10Q9BZW7 698 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 IL22Q9GZX6 179 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 SLC26A1Q9H2B4 701 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 EIF2B3Q9NR50 452 aaKnown RBP11.04□□□□□ -0.64
USP4-204ENST00000416417 TARM1B6A8C7 271 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 H0YGG7 62 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 CEP104O60308 925 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 DDAH2O95865 285 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 CELA2AP08217 269 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 ZGLP1P0C6A0 271 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 VARSP26640 1264 aaKnown RBP11.04□□□□□ -0.64
USP4-204ENST00000416417 ARF3P61204 181 aaPredicted RBP11.04□□□□□ -0.64
USP4-204ENST00000416417 CDC16Q13042 620 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 CUL1Q13616 776 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 ELOAQ14241 798 aaKnown RBP11.04□□□□□ -0.64
USP4-204ENST00000416417 KCNJ11Q14654 390 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 SYT16Q17RD7 645 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 HKDC1Q2TB90 917 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 KLHL38Q2WGJ6 581 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 FAM214AQ32MH5 1076 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 AGAP7PQ5VUJ5 663 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 CENPUQ71F23 418 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 RNF44Q7L0R7 432 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 MAMDC2Q7Z304 686 aaPredicted RBP11.04□□□□□ -0.64
USP4-204ENST00000416417 KCNMB4Q86W47 210 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 PLD3Q8IV08 490 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 GRHL3Q8TE85 626 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 UBE2Q2Q8WVN8 375 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 PEX13Q92968 403 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 MIEF2Q96C03 454 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 CABS1Q96KC9 395 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 FOPNLQ96NB1 174 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 AGAP4Q96P64 663 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 PKP4Q99569 1192 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 KIFC1Q9BW19 673 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 LHPPQ9H008 270 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 SEMA3GQ9NS98 782 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 PLA2G3Q9NZ20 509 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 C3orf18Q9UK00 162 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 SOX13Q9UN79 622 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 SLC5A6Q9Y289 635 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 DRG1Q9Y295 367 aaKnown RBP11.04□□□□□ -0.64
USP4-204ENST00000416417 FAM169AQ9Y6X4 670 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 IGKV1-8A0A0C4DH67 115 aa11.03□□□□□ -0.64
USP4-204ENST00000416417 OR2A25A4D2G3 310 aa11.03□□□□□ -0.64
USP4-204ENST00000416417 GOLGA8MH3BSY2 632 aa11.03□□□□□ -0.64
USP4-204ENST00000416417 KPNA5O15131 536 aa11.03□□□□□ -0.64
USP4-204ENST00000416417 SRPX2O60687 465 aaPredicted RBP11.03□□□□□ -0.64
USP4-204ENST00000416417 MATN4O95460 622 aa11.03□□□□□ -0.64
USP4-204ENST00000416417 ERVK-10P10266 1014 aa11.03□□□□□ -0.64
USP4-204ENST00000416417 FBLP22087 321 aaKnown RBP11.03□□□□□ -0.64
USP4-204ENST00000416417 CMPK1P30085 196 aa11.03□□□□□ -0.64
USP4-204ENST00000416417 RPA3P35244 121 aaPredicted RBP11.03□□□□□ -0.64
USP4-204ENST00000416417 DCTP40126 519 aa11.03□□□□□ -0.64
USP4-204ENST00000416417 CCNFP41002 786 aa11.03□□□□□ -0.64
USP4-204ENST00000416417 EEF1A2Q05639 463 aaKnown RBP11.03□□□□□ -0.64
USP4-204ENST00000416417 GBX1Q14549 363 aa11.03□□□□□ -0.64
USP4-204ENST00000416417 IRAK1BP1Q5VVH5 260 aa11.03□□□□□ -0.64
USP4-204ENST00000416417 MRNIPQ6NTE8 343 aa11.03□□□□□ -0.64
USP4-204ENST00000416417 CASC4Q6P4E1 433 aa11.03□□□□□ -0.64
USP4-204ENST00000416417 LRRC8BQ6P9F7 803 aa11.03□□□□□ -0.64
USP4-204ENST00000416417 SDCCAG8Q86SQ7 713 aaPredicted RBP11.03□□□□□ -0.64
USP4-204ENST00000416417 LRRC6Q86X45 466 aa11.03□□□□□ -0.64
USP4-204ENST00000416417 RAB42Q8N4Z0 105 aa11.03□□□□□ -0.64
USP4-204ENST00000416417 OR9A1PQ8NGU1 263 aa11.03□□□□□ -0.64
USP4-204ENST00000416417 HMGCLL1Q8TB92 370 aa11.03□□□□□ -0.64
USP4-204ENST00000416417 PPP4R1Q8TF05 950 aa11.03□□□□□ -0.64
USP4-204ENST00000416417 C5orf34Q96MH7 638 aa11.03□□□□□ -0.64
USP4-204ENST00000416417 BARD1Q99728 777 aaKnown RBP11.03□□□□□ -0.64
USP4-204ENST00000416417 ZFYVE21Q9BQ24 234 aa11.03□□□□□ -0.64
USP4-204ENST00000416417 MRM3Q9HC36 420 aaKnown RBP11.03□□□□□ -0.64
USP4-204ENST00000416417 MRPS30Q9NP92 439 aaKnown RBP11.03□□□□□ -0.64
USP4-204ENST00000416417 FBXO6Q9NRD1 293 aaPredicted RBP11.03□□□□□ -0.64
USP4-204ENST00000416417 SPATA7Q9P0W8 599 aa11.03□□□□□ -0.64
USP4-204ENST00000416417 TAC3Q9UHF0 121 aa11.03□□□□□ -0.64
USP4-204ENST00000416417 OSGIN2Q9Y236 505 aa11.03□□□□□ -0.64
USP4-204ENST00000416417 RUVBL1Q9Y265 456 aaKnown RBP11.03□□□□□ -0.64
USP4-204ENST00000416417 NUP210LQ5VU65 1888 aa11.02□□□□□ -0.64
USP4-204ENST00000416417 UNC79Q9P2D8 2635 aa11.02□□□□□ -0.65
USP4-204ENST00000416417 WIPF3A6NGB9 483 aa11.02□□□□□ -0.65
USP4-204ENST00000416417 E2F3O00716 465 aa11.02□□□□□ -0.65
USP4-204ENST00000416417 SYF2O95926 243 aaKnown RBP11.02□□□□□ -0.65
USP4-204ENST00000416417 ACPPP15309 386 aa11.02□□□□□ -0.65
USP4-204ENST00000416417 ST13P50502 369 aaKnown RBP11.02□□□□□ -0.65
USP4-204ENST00000416417 EFNA3P52797 238 aa11.02□□□□□ -0.65
USP4-204ENST00000416417 OCA2Q04671 838 aa11.02□□□□□ -0.65
USP4-204ENST00000416417 GPS1Q13098 491 aa11.02□□□□□ -0.65
USP4-204ENST00000416417 ZNF169Q14929 603 aaPredicted RBP11.02□□□□□ -0.65
USP4-204ENST00000416417 TYSND1Q2T9J0 566 aa11.02□□□□□ -0.65
USP4-204ENST00000416417 PRTGQ2VWP7 1150 aa11.02□□□□□ -0.65
USP4-204ENST00000416417 YOD1Q5VVQ6 348 aaPredicted RBP11.02□□□□□ -0.65
USP4-204ENST00000416417 TTC27Q6P3X3 843 aa11.02□□□□□ -0.65
USP4-204ENST00000416417 DRICH1Q6PGQ1 229 aaPredicted RBP11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms