RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 SOCS2O14508 198 aa14.4□□□□□ -0.1
USP4-203ENST00000415188 NUAK1O60285 661 aa14.4□□□□□ -0.1
USP4-203ENST00000415188 GMNNO75496 209 aa14.4□□□□□ -0.1
USP4-203ENST00000415188 PGM3O95394 542 aa14.4□□□□□ -0.1
USP4-203ENST00000415188 LDLRP01130 860 aa14.4□□□□□ -0.1
USP4-203ENST00000415188 CYP2A6P11509 494 aaPredicted RBP14.4□□□□□ -0.1
USP4-203ENST00000415188 SLC2A4P14672 509 aa14.4□□□□□ -0.1
USP4-203ENST00000415188 TYRP14679 529 aa14.4□□□□□ -0.1
USP4-203ENST00000415188 ACPPP15309 386 aa14.4□□□□□ -0.1
USP4-203ENST00000415188 ZNF30P17039 623 aa14.4□□□□□ -0.1
USP4-203ENST00000415188 MYF6P23409 242 aa14.4□□□□□ -0.1
USP4-203ENST00000415188 CALRP27797 417 aaKnown RBP14.4□□□□□ -0.1
USP4-203ENST00000415188 GKP32189 559 aa14.4□□□□□ -0.1
USP4-203ENST00000415188 CASP2P42575 452 aa14.4□□□□□ -0.1
USP4-203ENST00000415188 HNMTP50135 292 aa14.4□□□□□ -0.1
USP4-203ENST00000415188 HNRNPFP52597 415 aaKnown RBP14.4□□□□□ -0.1
USP4-203ENST00000415188 KIAA0040Q15053 153 aa14.4□□□□□ -0.1
USP4-203ENST00000415188 IMPG1Q17R60 797 aa14.4□□□□□ -0.1
USP4-203ENST00000415188 EOGTQ5NDL2 527 aa14.4□□□□□ -0.1
USP4-203ENST00000415188 PLEKHS1Q5SXH7 462 aa14.4□□□□□ -0.1
USP4-203ENST00000415188 PMS2CLQ68D20 193 aa14.4□□□□□ -0.1
USP4-203ENST00000415188 IYDQ6PHW0 289 aa14.4□□□□□ -0.1
USP4-203ENST00000415188 SLC2A7Q6PXP3 512 aa14.4□□□□□ -0.1
USP4-203ENST00000415188 TSPAN33Q86UF1 283 aa14.4□□□□□ -0.1
USP4-203ENST00000415188 EPHX4Q8IUS5 362 aa14.4□□□□□ -0.1
USP4-203ENST00000415188 CBR4Q8N4T8 237 aa14.4□□□□□ -0.1
USP4-203ENST00000415188 FRMD1Q8N878 549 aa14.4□□□□□ -0.1
USP4-203ENST00000415188 DCBLD1Q8N8Z6 715 aa14.4□□□□□ -0.1
USP4-203ENST00000415188 TERB1Q8NA31 727 aa14.4□□□□□ -0.1
USP4-203ENST00000415188 TSPAN14Q8NG11 270 aa14.4□□□□□ -0.1
USP4-203ENST00000415188 OR52E4Q8NGH9 312 aa14.4□□□□□ -0.1
USP4-203ENST00000415188 HMGB4Q8WW32 186 aa14.4□□□□□ -0.1
USP4-203ENST00000415188 SLC13A3Q8WWT9 602 aa14.4□□□□□ -0.1
USP4-203ENST00000415188 CCDC97Q96F63 343 aaPredicted RBP14.4□□□□□ -0.1
USP4-203ENST00000415188 RMND5BQ96G75 393 aaPredicted RBP14.4□□□□□ -0.1
USP4-203ENST00000415188 DPY30Q9C005 99 aa14.4□□□□□ -0.1
USP4-203ENST00000415188 SLC32A1Q9H598 525 aa14.4□□□□□ -0.1
USP4-203ENST00000415188 LRTM1Q9HBL6 345 aa14.4□□□□□ -0.1
USP4-203ENST00000415188 PTTG2Q9NZH5 202 aa14.4□□□□□ -0.1
USP4-203ENST00000415188 PKD2L2Q9NZM6 624 aa14.4□□□□□ -0.1
USP4-203ENST00000415188 NFKBIL1Q9UBC1 381 aaPredicted RBP14.4□□□□□ -0.1
USP4-203ENST00000415188 ZNF639Q9UID6 485 aa14.4□□□□□ -0.1
USP4-203ENST00000415188 CLEC4EQ9ULY5 219 aa14.4□□□□□ -0.1
USP4-203ENST00000415188 TCRBV21S2A2A0A5A6 115 aa14.39□□□□□ -0.11
USP4-203ENST00000415188 PABPN1LA6NDY0 278 aaKnown RBP14.39□□□□□ -0.11
USP4-203ENST00000415188 FOXD2O60548 495 aaPredicted RBP14.39□□□□□ -0.11
USP4-203ENST00000415188 AP2A2O94973 939 aa14.39□□□□□ -0.11
USP4-203ENST00000415188 CLDN9O95484 217 aa14.39□□□□□ -0.11
USP4-203ENST00000415188 ANXA6P08133 673 aa14.39□□□□□ -0.11
USP4-203ENST00000415188 ZNF23P17027 643 aa14.39□□□□□ -0.11
USP4-203ENST00000415188 CKMT2P17540 419 aa14.39□□□□□ -0.11
USP4-203ENST00000415188 PRPH2P23942 346 aa14.39□□□□□ -0.11
USP4-203ENST00000415188 AOAHP28039 575 aa14.39□□□□□ -0.11
USP4-203ENST00000415188 MAPK1P28482 360 aa14.39□□□□□ -0.11
USP4-203ENST00000415188 OXTRP30559 389 aa14.39□□□□□ -0.11
USP4-203ENST00000415188 WASP42768 502 aa14.39□□□□□ -0.11
USP4-203ENST00000415188 DCDC1P59894 354 aa14.39□□□□□ -0.11
USP4-203ENST00000415188 RPL38P63173 70 aaKnown RBP14.39□□□□□ -0.11
USP4-203ENST00000415188 ZNF33BQ06732 778 aa14.39□□□□□ -0.11
USP4-203ENST00000415188 FUT11Q495W5 492 aa14.39□□□□□ -0.11
USP4-203ENST00000415188 BRAT1Q6PJG6 821 aa14.39□□□□□ -0.11
USP4-203ENST00000415188 IFNEQ86WN2 208 aa14.39□□□□□ -0.11
USP4-203ENST00000415188 ZNF513Q8N8E2 541 aaPredicted RBP14.39□□□□□ -0.11
USP4-203ENST00000415188 VOPP1Q96AW1 172 aa14.39□□□□□ -0.11
USP4-203ENST00000415188 ERLEC1Q96DZ1 483 aa14.39□□□□□ -0.11
USP4-203ENST00000415188 BDH2Q9BUT1 245 aa14.39□□□□□ -0.11
USP4-203ENST00000415188 SLC12A9Q9BXP2 914 aa14.39□□□□□ -0.11
USP4-203ENST00000415188 RBM38Q9H0Z9 239 aaKnown RBP14.39□□□□□ -0.11
USP4-203ENST00000415188 CLK4Q9HAZ1 481 aaKnown RBP14.39□□□□□ -0.11
USP4-203ENST00000415188 PARVBQ9HBI1 364 aa14.39□□□□□ -0.11
USP4-203ENST00000415188 C1orf109Q9NX04 203 aa14.39□□□□□ -0.11
USP4-203ENST00000415188 MARK1Q9P0L2 795 aa14.39□□□□□ -0.11
USP4-203ENST00000415188 KLQ9UEF7 1012 aa14.39□□□□□ -0.11
USP4-203ENST00000415188 RNF103-CHMP3A0A140T963 221 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 CFAP99D6REC4 459 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 QSOX1O00391 747 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 RSL1D1O76021 490 aaKnown RBP14.38□□□□□ -0.11
USP4-203ENST00000415188 BMP10O95393 424 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 C1SP09871 688 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 MTHFD1P11586 935 aaKnown RBP14.38□□□□□ -0.11
USP4-203ENST00000415188 PRPS2P11908 318 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 GGT1P19440 569 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 HRH2P25021 359 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 HLA-FP30511 346 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 SPINT3P49223 89 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 AP1S2P56377 157 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 OR4D2P58180 307 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 PLOD1Q02809 727 aaPredicted RBP14.38□□□□□ -0.11
USP4-203ENST00000415188 PTSQ03393 145 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 LSAMPQ13449 338 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 GK3PQ14409 553 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 NADK2Q4G0N4 442 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 RFTN2Q52LD8 501 aaPredicted RBP14.38□□□□□ -0.11
USP4-203ENST00000415188 STPG1Q5TH74 334 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 EGFLAMQ63HQ2 1017 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 GLYATQ6IB77 296 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 MSANTD1Q6ZTZ1 278 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 BIRC7Q96CA5 298 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 TMEM74Q96NL1 305 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 SH3GL3Q99963 347 aa14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms