RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 TRAPPC12Q8WVT3 735 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 ARL11Q969Q4 196 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 TM6SF2Q9BZW4 377 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 RLIMQ9NVW2 624 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 RFPL1O75677 317 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 VSTM1Q6UX27 236 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 SV2AQ7L0J3 742 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 ART4Q93070 314 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 PHPT1Q9NRX4 125 aaPredicted RBP13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 CENPMQ9NSP4 180 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 CHRM5P08912 532 aaPredicted RBP13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 MSX1P28360 303 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 MPIP34949 423 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 NCBP2P52298 156 aaKnown RBP eCLIP13.04□□□□□ -0.322e-9■□□□□ 10.4
CCDC88A-204ENST00000413716 MARCH9Q86YJ5 346 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 MEAF6Q9HAF1 191 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 ENAMQ9NRM1 1142 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 MGAT4CQ9UBM8 478 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 F8W036 122 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 OR1F1O43749 312 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 CREBL2O60519 120 aaPredicted RBP13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 BLOC1S1P78537 153 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 ZNF574Q6ZN55 896 aaPredicted RBP13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 OR8K3Q8NH51 312 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 NUFIP1Q9UHK0 495 aaKnown RBP13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 A0A0A6YYH2 397 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 A6NJ64 397 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 SLITRK5O94991 958 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 CYP1A2P05177 515 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 SLC18A2Q05940 514 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 LILRB2Q8N423 598 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 LINC00471Q8N535 108 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 PLK2Q9NYY3 685 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 CA5BQ9Y2D0 317 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 SLC22A2O15244 555 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 PRKXP51817 358 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 DYRK1AQ13627 763 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 TNS3Q68CZ2 1445 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 KCNIP4Q6PIL6 250 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 DDX1Q92499 740 aaKnown RBP13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 A0A1B0GVI7 797 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 FAM149AA5PLN7 773 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 HMX3A6NHT5 357 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 MPSTP25325 297 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 KCNJ5P48544 419 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 PSPHP78330 225 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 MRPL49Q13405 166 aaKnown RBP13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 SERINC3Q13530 473 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 FAM174BQ3ZCQ3 159 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 TMEM209Q96SK2 561 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 BCAS3Q9H6U6 928 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 RPS10P5Q9NQ39 176 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 NFASCO94856 1347 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 SHROOM3Q8TF72 1996 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 GXYLT2A0PJZ3 443 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 LRRC72A6NJI9 287 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 TLR4O00206 839 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 RAC2P15153 192 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 ITPK1Q13572 414 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 TSEN2Q8NCE0 465 aaKnown RBP13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 EBF3Q9H4W6 596 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 PCCBP05166 539 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 BPGMP07738 259 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 RAB3BP20337 219 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 OR7G1Q8NGA0 311 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 DNAJB8Q8NHS0 232 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 THEM6Q8WUY1 208 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 MTG2Q9H4K7 406 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 AGO4Q9HCK5 861 aaKnown RBP13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 ARHGAP20Q9P2F6 1191 aa13.04□□□□□ -0.32
CCDC88A-204ENST00000413716 SRPRAP08240 638 aaKnown RBP13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 AMY2BP19961 511 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 ASB7Q9H672 318 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 GLYATL1P3A0A0U1RQE8 302 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 J3QLW9 94 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 HLA-DPB1P04440 258 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 ZNF19P17023 458 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 SREBF1P36956 1147 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 ENTPD1P49961 510 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 DPY19L4Q7Z388 723 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 PIGBQ92521 554 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 MYRFLQ96LU7 910 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 GBE1Q04446 702 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 CACNG1Q06432 222 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 LCP2Q13094 533 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 GRB10Q13322 594 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 FTMTQ8N4E7 242 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 ELMO3Q96BJ8 720 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 SECISBP2Q96T21 854 aaKnown RBP13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 PDGFDQ9GZP0 370 aaPredicted RBP13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 GPATCH2Q9NW75 528 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 GPRC5BQ9NZH0 403 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 K7EPK0 472 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 AGPSO00116 658 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 MAGEB1P43366 347 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 SCARB2Q14108 478 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 MLIPQ5VWP3 458 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 PAPD4Q6PIY7 484 aaKnown RBP13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 FAM71E2Q8N5Q1 922 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 ANKRD52Q8NB46 1076 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms