RNA–Protein interactions for RNA: ENST00000412061.3

BRCA1-204, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,312 nt, Biotype non stop decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-204ENST00000412061 FAM25EA8MYX2 175 aa4.3□□□□□ -1.72
BRCA1-204ENST00000412061 CXCL11O14625 94 aa4.3□□□□□ -1.72
BRCA1-204ENST00000412061 HS3ST1O14792 307 aa4.3□□□□□ -1.72
BRCA1-204ENST00000412061 PPEF2O14830 753 aa4.3□□□□□ -1.72
BRCA1-204ENST00000412061 NUDT21O43809 227 aaKnown RBP4.3□□□□□ -1.72
BRCA1-204ENST00000412061 ATP6V1G1O75348 118 aa4.3□□□□□ -1.72
BRCA1-204ENST00000412061 CXCL10P02778 98 aa4.3□□□□□ -1.72
BRCA1-204ENST00000412061 KRT8P05787 483 aa4.3□□□□□ -1.72
BRCA1-204ENST00000412061 SAGP10523 405 aaPredicted RBP4.3□□□□□ -1.72
BRCA1-204ENST00000412061 EPB41P11171 864 aaKnown RBP4.3□□□□□ -1.72
BRCA1-204ENST00000412061 MYL6BP14649 208 aa4.3□□□□□ -1.72
BRCA1-204ENST00000412061 ZNF18P17022 549 aa4.3□□□□□ -1.72
BRCA1-204ENST00000412061 MAOAP21397 527 aa4.3□□□□□ -1.72
BRCA1-204ENST00000412061 PIK3R1P27986 724 aa4.3□□□□□ -1.72
BRCA1-204ENST00000412061 IER3P46695 156 aa4.3□□□□□ -1.72
BRCA1-204ENST00000412061 COMPP49747 757 aaPredicted RBP4.3□□□□□ -1.72
BRCA1-204ENST00000412061 MXI1P50539 228 aa4.3□□□□□ -1.72
BRCA1-204ENST00000412061 NUDT6P53370 316 aa4.3□□□□□ -1.72
BRCA1-204ENST00000412061 SSBP2P81877 361 aaPredicted RBP4.3□□□□□ -1.72
BRCA1-204ENST00000412061 SNTB2Q13425 540 aaKnown RBP4.3□□□□□ -1.72
BRCA1-204ENST00000412061 SYT16Q17RD7 645 aa4.3□□□□□ -1.72
BRCA1-204ENST00000412061 MANEAQ5SRI9 462 aa4.3□□□□□ -1.72
BRCA1-204ENST00000412061 CCNYL2Q5T2Q4 361 aa4.3□□□□□ -1.72
BRCA1-204ENST00000412061 PRAMEF7Q5VXH5 474 aa4.3□□□□□ -1.72
BRCA1-204ENST00000412061 DLEU7Q6UYE1 221 aa4.3□□□□□ -1.72
BRCA1-204ENST00000412061 PIP4P1Q86T03 277 aa4.3□□□□□ -1.72
BRCA1-204ENST00000412061 ANKRD46Q86W74 232 aa4.3□□□□□ -1.72
BRCA1-204ENST00000412061 SRRM1Q8IYB3 904 aaKnown RBP4.3□□□□□ -1.72
BRCA1-204ENST00000412061 C1orf87Q8N0U7 546 aa4.3□□□□□ -1.72
BRCA1-204ENST00000412061 BEST3Q8N1M1 668 aa4.3□□□□□ -1.72
BRCA1-204ENST00000412061 NANOGP1Q8N7R0 232 aa4.3□□□□□ -1.72
BRCA1-204ENST00000412061 OR56B1Q8NGI3 324 aa4.3□□□□□ -1.72
BRCA1-204ENST00000412061 GPT2Q8TD30 523 aa4.3□□□□□ -1.72
BRCA1-204ENST00000412061 LPAR1Q92633 364 aa4.3□□□□□ -1.72
BRCA1-204ENST00000412061 ZNF75CPQ92670 426 aaPredicted RBP4.3□□□□□ -1.72
BRCA1-204ENST00000412061 DDX50Q9BQ39 737 aaKnown RBP4.3□□□□□ -1.72
BRCA1-204ENST00000412061 ZNF416Q9BWM5 594 aa4.3□□□□□ -1.72
BRCA1-204ENST00000412061 POLDIP3Q9BY77 421 aaKnown RBP4.3□□□□□ -1.72
BRCA1-204ENST00000412061 POLR1EQ9GZS1 481 aaKnown RBP4.3□□□□□ -1.72
BRCA1-204ENST00000412061 TSPYL1Q9H0U9 437 aa4.3□□□□□ -1.72
BRCA1-204ENST00000412061 ATG10Q9H0Y0 220 aa4.3□□□□□ -1.72
BRCA1-204ENST00000412061 TMEM245Q9H330 911 aa4.3□□□□□ -1.72
BRCA1-204ENST00000412061 SLITRK6Q9H5Y7 841 aa4.3□□□□□ -1.72
BRCA1-204ENST00000412061 LRRC40Q9H9A6 602 aa4.3□□□□□ -1.72
BRCA1-204ENST00000412061 RBM28Q9NW13 759 aaKnown RBP4.3□□□□□ -1.72
BRCA1-204ENST00000412061 OSER1Q9NX31 292 aa4.3□□□□□ -1.72
BRCA1-204ENST00000412061 CNOT2Q9NZN8 540 aaKnown RBP4.3□□□□□ -1.72
BRCA1-204ENST00000412061 FOXA2Q9Y261 457 aaPredicted RBP4.3□□□□□ -1.72
BRCA1-204ENST00000412061 ZNF510Q9Y2H8 683 aa4.3□□□□□ -1.72
BRCA1-204ENST00000412061 SRPRBQ9Y5M8 271 aaKnown RBP4.3□□□□□ -1.72
BRCA1-204ENST00000412061 FAM230AA0A1W2PPH8 454 aa4.29□□□□□ -1.72
BRCA1-204ENST00000412061 NEMP2A6NFY4 417 aa4.29□□□□□ -1.72
BRCA1-204ENST00000412061 ANKDD1BA6NHY2 528 aa4.29□□□□□ -1.72
BRCA1-204ENST00000412061 C9P02748 559 aa4.29□□□□□ -1.72
BRCA1-204ENST00000412061 CPA3P15088 417 aa4.29□□□□□ -1.72
BRCA1-204ENST00000412061 CD58P19256 250 aa4.29□□□□□ -1.72
BRCA1-204ENST00000412061 PRDX6P30041 224 aa4.29□□□□□ -1.72
BRCA1-204ENST00000412061 PIGAP37287 484 aa4.29□□□□□ -1.72
BRCA1-204ENST00000412061 CDX1P47902 265 aaPredicted RBP4.29□□□□□ -1.72
BRCA1-204ENST00000412061 PLCD1P51178 756 aa4.29□□□□□ -1.72
BRCA1-204ENST00000412061 HUNKP57058 714 aa4.29□□□□□ -1.72
BRCA1-204ENST00000412061 SELENOVP59797 346 aa4.29□□□□□ -1.72
BRCA1-204ENST00000412061 CD81P60033 236 aa4.29□□□□□ -1.72
BRCA1-204ENST00000412061 NANOS3P60323 173 aaKnown RBP4.29□□□□□ -1.72
BRCA1-204ENST00000412061 UBE2HP62256 183 aa4.29□□□□□ -1.72
BRCA1-204ENST00000412061 CSNK2A1P68400 391 aaPredicted RBP4.29□□□□□ -1.72
BRCA1-204ENST00000412061 SPIBQ01892 262 aa4.29□□□□□ -1.72
BRCA1-204ENST00000412061 ABRQ12979 859 aa4.29□□□□□ -1.72
BRCA1-204ENST00000412061 MXD4Q14582 209 aaPredicted RBP4.29□□□□□ -1.72
BRCA1-204ENST00000412061 STXBP2Q15833 593 aa4.29□□□□□ -1.72
BRCA1-204ENST00000412061 CCDC152Q4G0S7 254 aa4.29□□□□□ -1.72
BRCA1-204ENST00000412061 SPATA46Q5T0L3 261 aa4.29□□□□□ -1.72
BRCA1-204ENST00000412061 DCST1Q5T197 706 aa4.29□□□□□ -1.72
BRCA1-204ENST00000412061 PXDC1Q5TGL8 231 aa4.29□□□□□ -1.72
BRCA1-204ENST00000412061 LCN10Q6JVE6 187 aa4.29□□□□□ -1.72
BRCA1-204ENST00000412061 DUS1LQ6P1R4 473 aaKnown RBP4.29□□□□□ -1.72
BRCA1-204ENST00000412061 BTNL8Q6UX41 500 aa4.29□□□□□ -1.72
BRCA1-204ENST00000412061 B3GLCTQ6Y288 498 aa4.29□□□□□ -1.72
BRCA1-204ENST00000412061 TMPRSS11FQ6ZWK6 438 aa4.29□□□□□ -1.72
BRCA1-204ENST00000412061 MRPL10Q7Z7H8 261 aaKnown RBP4.29□□□□□ -1.72
BRCA1-204ENST00000412061 TMPRSS11BQ86T26 416 aa4.29□□□□□ -1.72
BRCA1-204ENST00000412061 ZC3HC1Q86WB0 502 aaKnown RBP4.29□□□□□ -1.72
BRCA1-204ENST00000412061 ZNF679Q8IYX0 411 aa4.29□□□□□ -1.72
BRCA1-204ENST00000412061 EIF1ADQ8N9N8 165 aaKnown RBP4.29□□□□□ -1.72
BRCA1-204ENST00000412061 LEMD2Q8NC56 503 aa4.29□□□□□ -1.72
BRCA1-204ENST00000412061 CSNK2A3Q8NEV1 391 aa4.29□□□□□ -1.72
BRCA1-204ENST00000412061 OR52B4Q8NGK2 314 aa4.29□□□□□ -1.72
BRCA1-204ENST00000412061 VANGL1Q8TAA9 524 aaPredicted RBP4.29□□□□□ -1.72
BRCA1-204ENST00000412061 NTN5Q8WTR8 489 aaPredicted RBP4.29□□□□□ -1.72
BRCA1-204ENST00000412061 SLC20A1Q8WUM9 679 aa4.29□□□□□ -1.72
BRCA1-204ENST00000412061 CASP10Q92851 521 aa4.29□□□□□ -1.72
BRCA1-204ENST00000412061 SLCO4A1Q96BD0 722 aa4.29□□□□□ -1.72
BRCA1-204ENST00000412061 SLC22A12Q96S37 553 aa4.29□□□□□ -1.72
BRCA1-204ENST00000412061 MYADMQ96S97 322 aa4.29□□□□□ -1.72
BRCA1-204ENST00000412061 TBCDQ9BTW9 1192 aa4.29□□□□□ -1.72
BRCA1-204ENST00000412061 MSTO1Q9BUK6 570 aa4.29□□□□□ -1.72
BRCA1-204ENST00000412061 IDI2Q9BXS1 227 aa4.29□□□□□ -1.72
BRCA1-204ENST00000412061 GCOM2Q9BZD3 368 aaPredicted RBP4.29□□□□□ -1.72
BRCA1-204ENST00000412061 EGLN1Q9GZT9 426 aa4.29□□□□□ -1.72
BRCA1-204ENST00000412061 UBQLN3Q9H347 655 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms