RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 H0YIV9 168 aa13.58□□□□□ -0.24
GPNMB-203ENST00000409458 RSL1D1O76021 490 aaKnown RBP13.58□□□□□ -0.24
GPNMB-203ENST00000409458 PDGFBP01127 241 aaPredicted RBP13.58□□□□□ -0.24
GPNMB-203ENST00000409458 TNFP01375 233 aa13.58□□□□□ -0.24
GPNMB-203ENST00000409458 SLC2A4P14672 509 aa13.58□□□□□ -0.24
GPNMB-203ENST00000409458 EZRP15311 586 aaKnown RBP13.58□□□□□ -0.24
GPNMB-203ENST00000409458 PSMB5P28074 263 aa13.58□□□□□ -0.24
GPNMB-203ENST00000409458 MAGEA9P43362 315 aa13.58□□□□□ -0.24
GPNMB-203ENST00000409458 CXCL12P48061 93 aa13.58□□□□□ -0.24
GPNMB-203ENST00000409458 YBX1P67809 324 aaKnown RBP13.58□□□□□ -0.24
GPNMB-203ENST00000409458 IRX1P78414 480 aaPredicted RBP13.58□□□□□ -0.24
GPNMB-203ENST00000409458 ELF3P78545 371 aaPredicted RBP13.58□□□□□ -0.24
GPNMB-203ENST00000409458 ZXDAP98168 799 aa13.58□□□□□ -0.24
GPNMB-203ENST00000409458 DMWDQ09019 674 aa13.58□□□□□ -0.24
GPNMB-203ENST00000409458 SLBPQ14493 270 aaKnown RBP eCLIP13.58□□□□□ -0.24
GPNMB-203ENST00000409458 KRT33BQ14525 404 aa13.58□□□□□ -0.24
GPNMB-203ENST00000409458 ZNF542PQ5EBM4 170 aa13.58□□□□□ -0.24
GPNMB-203ENST00000409458 ATG9BQ674R7 924 aa13.58□□□□□ -0.24
GPNMB-203ENST00000409458 CWF19L1Q69YN2 538 aaKnown RBP13.58□□□□□ -0.24
GPNMB-203ENST00000409458 NXPE4Q6UWF7 544 aa13.58□□□□□ -0.24
GPNMB-203ENST00000409458 ABRAXAS1Q6UWZ7 409 aa13.58□□□□□ -0.24
GPNMB-203ENST00000409458 WASH2PQ6VEQ5 465 aa13.58□□□□□ -0.24
GPNMB-203ENST00000409458 OR52E1Q8NGJ3 308 aa13.58□□□□□ -0.24
GPNMB-203ENST00000409458 SETD7Q8WTS6 366 aaKnown RBP13.58□□□□□ -0.24
GPNMB-203ENST00000409458 MCUR1Q96AQ8 359 aa13.58□□□□□ -0.24
GPNMB-203ENST00000409458 TEX37Q96LM6 180 aa13.58□□□□□ -0.24
GPNMB-203ENST00000409458 NPAS2Q99743 824 aa13.58□□□□□ -0.24
GPNMB-203ENST00000409458 ACAT2Q9BWD1 397 aa13.58□□□□□ -0.24
GPNMB-203ENST00000409458 WASH6PQ9NQA3 447 aa13.58□□□□□ -0.24
GPNMB-203ENST00000409458 TAC3Q9UHF0 121 aa13.58□□□□□ -0.24
GPNMB-203ENST00000409458 KLF15Q9UIH9 416 aa13.58□□□□□ -0.24
GPNMB-203ENST00000409458 PCOLCE2Q9UKZ9 415 aa13.58□□□□□ -0.24
GPNMB-203ENST00000409458 ICKQ9UPZ9 632 aa13.58□□□□□ -0.24
GPNMB-203ENST00000409458 CEP192Q8TEP8 1941 aa13.57□□□□□ -0.24
GPNMB-203ENST00000409458 ZNF839A8K0R7 811 aa13.57□□□□□ -0.24
GPNMB-203ENST00000409458 NR5A2O00482 541 aa13.57□□□□□ -0.24
GPNMB-203ENST00000409458 FBP2O00757 339 aa13.57□□□□□ -0.24
GPNMB-203ENST00000409458 AXIN1O15169 862 aa13.57□□□□□ -0.24
GPNMB-203ENST00000409458 WNT1P04628 370 aa13.57□□□□□ -0.24
GPNMB-203ENST00000409458 CELA2BP08218 269 aaPredicted RBP13.57□□□□□ -0.24
GPNMB-203ENST00000409458 SNRPB2P08579 225 aaKnown RBP13.57□□□□□ -0.24
GPNMB-203ENST00000409458 C1GALT1C1LP0DN25 315 aa13.57□□□□□ -0.24
GPNMB-203ENST00000409458 G6PDP11413 515 aa13.57□□□□□ -0.24
GPNMB-203ENST00000409458 CDH1P12830 882 aa13.57□□□□□ -0.24
GPNMB-203ENST00000409458 BCKDHBP21953 392 aa13.57□□□□□ -0.24
GPNMB-203ENST00000409458 PRPH2P23942 346 aa13.57□□□□□ -0.24
GPNMB-203ENST00000409458 CD27P26842 260 aa13.57□□□□□ -0.24
GPNMB-203ENST00000409458 ZFP36L2P47974 494 aaKnown RBP13.57□□□□□ -0.24
GPNMB-203ENST00000409458 RAB28P51157 221 aa13.57□□□□□ -0.24
GPNMB-203ENST00000409458 UFM1P61960 85 aa13.57□□□□□ -0.24
GPNMB-203ENST00000409458 RPL6Q02878 288 aaKnown RBP13.57□□□□□ -0.24
GPNMB-203ENST00000409458 RPS6KA2Q15349 733 aa13.57□□□□□ -0.24
GPNMB-203ENST00000409458 IL23RQ5VWK5 629 aa13.57□□□□□ -0.24
GPNMB-203ENST00000409458 REP15Q6BDI9 236 aa13.57□□□□□ -0.24
GPNMB-203ENST00000409458 ZFAND4Q86XD8 727 aa13.57□□□□□ -0.24
GPNMB-203ENST00000409458 C10orf67Q8IYJ2 551 aa13.57□□□□□ -0.24
GPNMB-203ENST00000409458 RAB42Q8N4Z0 105 aa13.57□□□□□ -0.24
GPNMB-203ENST00000409458 CADM4Q8NFZ8 388 aa13.57□□□□□ -0.24
GPNMB-203ENST00000409458 JPH3Q8WXH2 748 aaPredicted RBP13.57□□□□□ -0.24
GPNMB-203ENST00000409458 SMPDL3AQ92484 453 aa13.57□□□□□ -0.24
GPNMB-203ENST00000409458 KLHDC7BQ96G42 594 aa13.57□□□□□ -0.24
GPNMB-203ENST00000409458 SPACA7Q96KW9 195 aa13.57□□□□□ -0.24
GPNMB-203ENST00000409458 HAUS8Q9BT25 410 aa13.57□□□□□ -0.24
GPNMB-203ENST00000409458 PCED1AQ9H1Q7 454 aa13.57□□□□□ -0.24
GPNMB-203ENST00000409458 EHD1Q9H4M9 534 aa13.57□□□□□ -0.24
GPNMB-203ENST00000409458 GEMIN8Q9NWZ8 242 aaKnown RBP13.57□□□□□ -0.24
GPNMB-203ENST00000409458 C1orf109Q9NX04 203 aa13.57□□□□□ -0.24
GPNMB-203ENST00000409458 NOP53Q9NZM5 478 aaKnown RBP13.57□□□□□ -0.24
GPNMB-203ENST00000409458 DLGAP2Q9P1A6 1054 aa13.57□□□□□ -0.24
GPNMB-203ENST00000409458 HEBP2Q9Y5Z4 205 aa13.57□□□□□ -0.24
GPNMB-203ENST00000409458 PIPSLA2A3N6 862 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 SEC22BO75396 215 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 RASSF9O75901 435 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 PCNAP12004 261 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 MAOBP27338 520 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 PGM1P36871 562 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 MEF2AQ02078 507 aaPredicted RBP13.56□□□□□ -0.24
GPNMB-203ENST00000409458 ZNF33BQ06732 778 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 ILF3Q12906 894 aaKnown RBP eCLIP13.56□□□□□ -0.24
GPNMB-203ENST00000409458 CSTF3Q12996 717 aaKnown RBP13.56□□□□□ -0.24
GPNMB-203ENST00000409458 DDX39BQ13838 428 aaKnown RBP13.56□□□□□ -0.24
GPNMB-203ENST00000409458 KIAA0040Q15053 153 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 SMU1Q2TAY7 513 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 MED27Q6P2C8 311 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 CYP20A1Q6UW02 462 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 PHACTR4Q8IZ21 702 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 DEFB107AQ8IZN7 70 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 OR7G3Q8NG95 312 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 OR2L8Q8NGY9 312 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 GPBAR1Q8TDU6 330 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 APIPQ96GX9 242 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 CLPTM1LQ96KA5 538 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 MTERF1Q99551 399 aaKnown RBP13.56□□□□□ -0.24
GPNMB-203ENST00000409458 THTPAQ9BU02 230 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 EFCAB11Q9BUY7 163 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 SLC25A23Q9BV35 468 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 RAB11FIP5Q9BXF6 653 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 ACTL8Q9H568 366 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 KIR3DX1Q9H7L2 352 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 ZNF624Q9P2J8 865 aaPredicted RBP13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 98.2 ms