RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 IKZF3Q9UKT9 509 aa12.63□□□□□ -0.39
PTPRN-202ENST00000409251 SAGE2PA6NJ88 616 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 TLL1O43897 1013 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 MLYCDO95822 493 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 UMPSP11172 480 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 TNFRSF1BP20333 461 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 SCNN1AP37088 669 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 INPP1P49441 399 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 CDKN1CP49918 316 aaPredicted RBP12.62□□□□□ -0.39
PTPRN-202ENST00000409251 ISL1P61371 349 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 RFTN2Q52LD8 501 aaPredicted RBP12.62□□□□□ -0.39
PTPRN-202ENST00000409251 LRRC73Q5JTD7 316 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 FAM26DQ5JW98 314 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 DCP2Q8IU60 420 aaKnown RBP12.62□□□□□ -0.39
PTPRN-202ENST00000409251 SIDT2Q8NBJ9 832 aaKnown RBP12.62□□□□□ -0.39
PTPRN-202ENST00000409251 ISL2Q96A47 359 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 SLC9A7Q96T83 725 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 YTHDF1Q9BYJ9 559 aaKnown RBP12.62□□□□□ -0.39
PTPRN-202ENST00000409251 ZYG11BQ9C0D3 744 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 SP140LQ9H930 580 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 STMN3Q9NZ72 180 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 NCAM2O15394 837 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 TEX28O15482 410 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 CAPNS1P04632 268 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 STSP08842 583 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 CCNYL3P0C7X3 344 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 SLC6A4P31645 630 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 CRISP3P54108 245 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 IL18R1Q13478 541 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 ARHGEF6Q15052 776 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 SPDYE7PQ495Y7 208 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 PXDC1Q5TGL8 231 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 CACHD1Q5VU97 1274 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 USP51Q70EK9 711 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 CEP68Q76N32 757 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 RAB43Q86YS6 212 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 CILP2Q8IUL8 1156 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 NETO1Q8TDF5 533 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 PIK3R3Q92569 461 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 APOL4Q9BPW4 351 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 FAM124BQ9H5Z6 455 aaPredicted RBP12.62□□□□□ -0.39
PTPRN-202ENST00000409251 GPR83Q9NYM4 423 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 ABCD2Q9UBJ2 740 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 SARDHQ9UL12 918 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 PKP3Q9Y446 797 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 HSPB11Q9Y547 144 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 PCDHGB6Q9Y5F9 930 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 GPR45Q9Y5Y3 372 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 CLCA3PQ9Y6N3 262 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 TRAV19A0A0A6YYK7 116 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 CD3EAPO15446 510 aaKnown RBP12.62□□□□□ -0.39
PTPRN-202ENST00000409251 GABARAPO95166 117 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 OPN1SWP03999 348 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 CORO1AP31146 461 aaKnown RBP12.62□□□□□ -0.39
PTPRN-202ENST00000409251 ATP5C1P36542 298 aaKnown RBP12.62□□□□□ -0.39
PTPRN-202ENST00000409251 DNAJB13P59910 316 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 GPLD1P80108 840 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 ZXDBP98169 803 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 GPR17Q13304 367 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 RTL3Q8N8U3 475 aaKnown RBP12.62□□□□□ -0.39
PTPRN-202ENST00000409251 PROKR1Q8TCW9 393 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 DYNC2LI1Q8TCX1 351 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 HHIPL1Q96JK4 782 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 DPH2Q9BQC3 489 aaPredicted RBP12.62□□□□□ -0.39
PTPRN-202ENST00000409251 CLSTN3Q9BQT9 956 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 FARSBQ9NSD9 589 aaKnown RBP12.62□□□□□ -0.39
PTPRN-202ENST00000409251 QPCTLQ9NXS2 382 aa12.62□□□□□ -0.39
PTPRN-202ENST00000409251 AGAP5A6NIR3 686 aa12.61□□□□□ -0.39
PTPRN-202ENST00000409251 F5H5T6 163 aa12.61□□□□□ -0.39
PTPRN-202ENST00000409251 PER2O15055 1255 aa12.61□□□□□ -0.39
PTPRN-202ENST00000409251 MUSKO15146 869 aa12.61□□□□□ -0.39
PTPRN-202ENST00000409251 COCHO43405 550 aa12.61□□□□□ -0.39
PTPRN-202ENST00000409251 CBLP22681 906 aa12.61□□□□□ -0.39
PTPRN-202ENST00000409251 CREMQ03060 361 aa12.61□□□□□ -0.39
PTPRN-202ENST00000409251 ARMCX4Q5H9R4 360 aa12.61□□□□□ -0.39
PTPRN-202ENST00000409251 AGAP6Q5VW22 663 aa12.61□□□□□ -0.39
PTPRN-202ENST00000409251 FAAH2Q6GMR7 532 aa12.61□□□□□ -0.39
PTPRN-202ENST00000409251 NADSYN1Q6IA69 706 aa12.61□□□□□ -0.39
PTPRN-202ENST00000409251 ZNF544Q6NX49 715 aa12.61□□□□□ -0.39
PTPRN-202ENST00000409251 ZNF621Q6ZSS3 439 aa12.61□□□□□ -0.39
PTPRN-202ENST00000409251 BEND5Q7L4P6 421 aa12.61□□□□□ -0.39
PTPRN-202ENST00000409251 CDH24Q86UP0 819 aa12.61□□□□□ -0.39
PTPRN-202ENST00000409251 JPH3Q8WXH2 748 aaPredicted RBP12.61□□□□□ -0.39
PTPRN-202ENST00000409251 MRGPRX2Q96LB1 330 aa12.61□□□□□ -0.39
PTPRN-202ENST00000409251 AGAP4Q96P64 663 aa12.61□□□□□ -0.39
PTPRN-202ENST00000409251 TRMOQ9BU70 441 aa12.61□□□□□ -0.39
PTPRN-202ENST00000409251 CPNE5Q9HCH3 593 aa12.61□□□□□ -0.39
PTPRN-202ENST00000409251 ZC4H2Q9NQZ6 224 aa12.61□□□□□ -0.39
PTPRN-202ENST00000409251 LATS2Q9NRM7 1088 aa12.61□□□□□ -0.39
PTPRN-202ENST00000409251 POLR3BQ9NW08 1133 aaPredicted RBP12.61□□□□□ -0.39
PTPRN-202ENST00000409251 OPTCQ9UBM4 332 aa12.61□□□□□ -0.39
PTPRN-202ENST00000409251 CHD9Q3L8U1 2897 aa12.61□□□□□ -0.39
PTPRN-202ENST00000409251 SPTBN5Q9NRC6 3674 aaKnown RBP12.61□□□□□ -0.39
PTPRN-202ENST00000409251 FAM92AA1XBS5 289 aa12.61□□□□□ -0.39
PTPRN-202ENST00000409251 KLKB1P03952 638 aa12.61□□□□□ -0.39
PTPRN-202ENST00000409251 KRT20P35900 424 aa12.61□□□□□ -0.39
PTPRN-202ENST00000409251 CTSKP43235 329 aa12.61□□□□□ -0.39
PTPRN-202ENST00000409251 SMAD3P84022 425 aaKnown RBP12.61□□□□□ -0.39
PTPRN-202ENST00000409251 RAD51Q06609 339 aa12.61□□□□□ -0.39
PTPRN-202ENST00000409251 IHHQ14623 411 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms