RNA–Protein interactions for RNA: ENST00000404484.8

TPM1-208, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-208ENST00000404484 IMP3Q9NV31 184 aaKnown RBP20.33■□□□□ 0.84
TPM1-208ENST00000404484 SDAD1Q9NVU7 687 aaKnown RBP eCLIP20.33■□□□□ 0.84
TPM1-208ENST00000404484 CIDEBQ9UHD4 219 aa20.33■□□□□ 0.84
TPM1-208ENST00000404484 G3BP2Q9UN86 482 aaKnown RBP20.33■□□□□ 0.84
TPM1-208ENST00000404484 WDR37Q9Y2I8 494 aa20.33■□□□□ 0.84
TPM1-208ENST00000404484 PLEKHM1Q9Y4G2 1056 aa20.33■□□□□ 0.84
TPM1-208ENST00000404484 PTGDR2Q9Y5Y4 395 aa20.33■□□□□ 0.84
TPM1-208ENST00000404484 LOC105378220A0A1B0GUY1 285 aaPredicted RBP20.32■□□□□ 0.84
TPM1-208ENST00000404484 E7ENX8 843 aa20.32■□□□□ 0.84
TPM1-208ENST00000404484 THRAP10827 490 aa20.32■□□□□ 0.84
TPM1-208ENST00000404484 JUPP14923 745 aa20.32■□□□□ 0.84
TPM1-208ENST00000404484 PIK3R1P27986 724 aa20.32■□□□□ 0.84
TPM1-208ENST00000404484 NDUFS1P28331 727 aa20.32■□□□□ 0.84
TPM1-208ENST00000404484 PTPN4P29074 926 aa20.32■□□□□ 0.84
TPM1-208ENST00000404484 HOXD12P35452 270 aa20.32■□□□□ 0.84
TPM1-208ENST00000404484 DPP6P42658 865 aa20.32■□□□□ 0.84
TPM1-208ENST00000404484 TAP2Q03519 686 aa20.32■□□□□ 0.84
TPM1-208ENST00000404484 GRB7Q14451 532 aa20.32■□□□□ 0.84
TPM1-208ENST00000404484 MAPRE2Q15555 327 aa20.32■□□□□ 0.84
TPM1-208ENST00000404484 CYP2A13Q16696 494 aa20.32■□□□□ 0.84
TPM1-208ENST00000404484 GSTA3Q16772 222 aa20.32■□□□□ 0.84
TPM1-208ENST00000404484 XKR6Q5GH73 641 aa20.32■□□□□ 0.84
TPM1-208ENST00000404484 TCHHL1Q5QJ38 904 aaPredicted RBP20.32■□□□□ 0.84
TPM1-208ENST00000404484 ABRAXAS1Q6UWZ7 409 aa20.32■□□□□ 0.84
TPM1-208ENST00000404484 ASRGL1Q7L266 308 aa20.32■□□□□ 0.84
TPM1-208ENST00000404484 HID1Q8IV36 788 aa20.32■□□□□ 0.84
TPM1-208ENST00000404484 PPFIBP2Q8ND30 876 aa20.32■□□□□ 0.84
TPM1-208ENST00000404484 PPP3R2Q96LZ3 170 aa20.32■□□□□ 0.84
TPM1-208ENST00000404484 HAUS8Q9BT25 410 aa20.32■□□□□ 0.84
TPM1-208ENST00000404484 AASDHPPTQ9NRN7 309 aa20.32■□□□□ 0.84
TPM1-208ENST00000404484 PCOLCE2Q9UKZ9 415 aa20.32■□□□□ 0.84
TPM1-208ENST00000404484 ZNF490Q9ULM2 529 aaPredicted RBP20.32■□□□□ 0.84
TPM1-208ENST00000404484 CFAP20Q9Y6A4 193 aaKnown RBP20.32■□□□□ 0.84
TPM1-208ENST00000404484 COLEC10Q9Y6Z7 277 aa20.32■□□□□ 0.84
TPM1-208ENST00000404484 CACNA1EQ15878 2313 aa20.31■□□□□ 0.84
TPM1-208ENST00000404484 KCNE1BA0A087WTH5 132 aa20.31■□□□□ 0.84
TPM1-208ENST00000404484 SPTY2D1-AS1A0A0U1RR47 76 aa20.31■□□□□ 0.84
TPM1-208ENST00000404484 LNP1A1A4G5 178 aa20.31■□□□□ 0.84
TPM1-208ENST00000404484 FFAR3O14843 346 aa20.31■□□□□ 0.84
TPM1-208ENST00000404484 GPR42O15529 346 aa20.31■□□□□ 0.84
TPM1-208ENST00000404484 WFS1O76024 890 aa20.31■□□□□ 0.84
TPM1-208ENST00000404484 IDO1P14902 403 aa20.31■□□□□ 0.84
TPM1-208ENST00000404484 CASP2P42575 452 aa20.31■□□□□ 0.84
TPM1-208ENST00000404484 HTR6P50406 440 aa20.31■□□□□ 0.84
TPM1-208ENST00000404484 BLKP51451 505 aa20.31■□□□□ 0.84
TPM1-208ENST00000404484 ILF3Q12906 894 aaKnown RBP eCLIP20.31■□□□□ 0.84
TPM1-208ENST00000404484 ABRAXAS2Q15018 415 aa20.31■□□□□ 0.84
TPM1-208ENST00000404484 ZRSR2Q15696 482 aaKnown RBP20.31■□□□□ 0.84
TPM1-208ENST00000404484 CPSF6Q16630 551 aaKnown RBP eCLIP20.31■□□□□ 0.84
TPM1-208ENST00000404484 IMPG1Q17R60 797 aa20.31■□□□□ 0.84
TPM1-208ENST00000404484 DUOXA1Q1HG43 343 aa20.31■□□□□ 0.84
TPM1-208ENST00000404484 SMU1Q2TAY7 513 aa20.31■□□□□ 0.84
TPM1-208ENST00000404484 AASDHQ4L235 1098 aaPredicted RBP20.31■□□□□ 0.84
TPM1-208ENST00000404484 SLC23A3Q6PIS1 610 aa20.31■□□□□ 0.84
TPM1-208ENST00000404484 TRIM46Q7Z4K8 759 aa20.31■□□□□ 0.84
TPM1-208ENST00000404484 LRRC56Q8IYG6 542 aaPredicted RBP20.31■□□□□ 0.84
TPM1-208ENST00000404484 SLC22A18ASQ8N1D0 253 aa20.31■□□□□ 0.84
TPM1-208ENST00000404484 OR4K3Q96R72 315 aa20.31■□□□□ 0.84
TPM1-208ENST00000404484 ORAI3Q9BRQ5 295 aa20.31■□□□□ 0.84
TPM1-208ENST00000404484 EHD1Q9H4M9 534 aa20.31■□□□□ 0.84
TPM1-208ENST00000404484 SLCO1B1Q9Y6L6 691 aa20.31■□□□□ 0.84
TPM1-208ENST00000404484 MTHFD1P11586 935 aaKnown RBP20.3■□□□□ 0.84
TPM1-208ENST00000404484 ERVK-8P63133 956 aa20.3■□□□□ 0.84
TPM1-208ENST00000404484 PRKG2Q13237 762 aa20.3■□□□□ 0.84
TPM1-208ENST00000404484 CLCA4Q14CN2 919 aa20.3■□□□□ 0.84
TPM1-208ENST00000404484 NR6A1Q15406 480 aa20.3■□□□□ 0.84
TPM1-208ENST00000404484 RPE65Q16518 533 aa20.3■□□□□ 0.84
TPM1-208ENST00000404484 RSPO4Q2I0M5 234 aaPredicted RBP20.3■□□□□ 0.84
TPM1-208ENST00000404484 PRAMEF14Q5SWL7 426 aa20.3■□□□□ 0.84
TPM1-208ENST00000404484 C10orf62Q5T681 223 aaPredicted RBP20.3■□□□□ 0.84
TPM1-208ENST00000404484 THEMIS2Q5TEJ8 643 aa20.3■□□□□ 0.84
TPM1-208ENST00000404484 PRAMEF13Q5VWM6 474 aa20.3■□□□□ 0.84
TPM1-208ENST00000404484 GRHL2Q6ISB3 625 aa20.3■□□□□ 0.84
TPM1-208ENST00000404484 SCIMPQ6UWF3 145 aa20.3■□□□□ 0.84
TPM1-208ENST00000404484 LCTLQ6UWM7 567 aa20.3■□□□□ 0.84
TPM1-208ENST00000404484 IQCHQ86VS3 1027 aa20.3■□□□□ 0.84
TPM1-208ENST00000404484 MFSD2AQ8NA29 543 aa20.3■□□□□ 0.84
TPM1-208ENST00000404484 RP9Q8TA86 221 aaKnown RBP20.3■□□□□ 0.84
TPM1-208ENST00000404484 C1orf216Q8TAB5 229 aa20.3■□□□□ 0.84
TPM1-208ENST00000404484 CEP76Q8TAP6 659 aa20.3■□□□□ 0.84
TPM1-208ENST00000404484 SMPDL3AQ92484 453 aa20.3■□□□□ 0.84
TPM1-208ENST00000404484 SLC7A6OSQ96CW6 309 aaPredicted RBP20.3■□□□□ 0.84
TPM1-208ENST00000404484 MARK4Q96L34 752 aa20.3■□□□□ 0.84
TPM1-208ENST00000404484 GSDMCQ9BYG8 508 aa20.3■□□□□ 0.84
TPM1-208ENST00000404484 MIR1-1HGQ9H1L0 117 aa20.3■□□□□ 0.84
TPM1-208ENST00000404484 FSCN3Q9NQT6 498 aa20.3■□□□□ 0.84
TPM1-208ENST00000404484 PRDM8Q9NQV8 689 aa20.3■□□□□ 0.84
TPM1-208ENST00000404484 SERTM1A2A2V5 107 aa20.29■□□□□ 0.84
TPM1-208ENST00000404484 E7EQ34 232 aa20.29■□□□□ 0.84
TPM1-208ENST00000404484 PEX11AO75192 247 aa20.29■□□□□ 0.84
TPM1-208ENST00000404484 CFIP05156 583 aa20.29■□□□□ 0.84
TPM1-208ENST00000404484 COX4I1P13073 169 aa20.29■□□□□ 0.84
TPM1-208ENST00000404484 ACTR1BP42025 376 aa20.29■□□□□ 0.84
TPM1-208ENST00000404484 MRPL19P49406 292 aaKnown RBP20.29■□□□□ 0.84
TPM1-208ENST00000404484 ACTR1AP61163 376 aa20.29■□□□□ 0.84
TPM1-208ENST00000404484 GRIK2Q13002 908 aa20.29■□□□□ 0.84
TPM1-208ENST00000404484 MAD2L1Q13257 205 aaPredicted RBP20.29■□□□□ 0.84
TPM1-208ENST00000404484 TSTA3Q13630 321 aaPredicted RBP20.29■□□□□ 0.84
TPM1-208ENST00000404484 E2F2Q14209 437 aa20.29■□□□□ 0.84
TPM1-208ENST00000404484 RPS6KA2Q15349 733 aa20.29■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms