RNA–Protein interactions for RNA: ENST00000395896.8

VPS13C-203, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 14,579 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-203ENST00000395896 G3V2T6 193 aa3.3□□□□□ -1.88
VPS13C-203ENST00000395896 H0YIV9 168 aa3.3□□□□□ -1.88
VPS13C-203ENST00000395896 POP7O75817 140 aaKnown RBP3.3□□□□□ -1.88
VPS13C-203ENST00000395896 NR2F6P10588 404 aa3.3□□□□□ -1.88
VPS13C-203ENST00000395896 LAMP2P13473 410 aa3.3□□□□□ -1.88
VPS13C-203ENST00000395896 CHRNA6Q15825 494 aa3.3□□□□□ -1.88
VPS13C-203ENST00000395896 LRRC23Q53EV4 343 aaPredicted RBP3.3□□□□□ -1.88
VPS13C-203ENST00000395896 CXorf57Q6NSI4 855 aaKnown RBP3.3□□□□□ -1.88
VPS13C-203ENST00000395896 C16orf62Q7Z3J2 963 aa3.3□□□□□ -1.88
VPS13C-203ENST00000395896 GPR141Q7Z602 305 aa3.3□□□□□ -1.88
VPS13C-203ENST00000395896 CPNE8Q86YQ8 564 aa3.3□□□□□ -1.88
VPS13C-203ENST00000395896 MICU2Q8IYU8 434 aa3.3□□□□□ -1.88
VPS13C-203ENST00000395896 DUSP26Q9BV47 211 aa3.3□□□□□ -1.88
VPS13C-203ENST00000395896 HDAC8Q9BY41 377 aa3.3□□□□□ -1.88
VPS13C-203ENST00000395896 TRPC4Q9UBN4 977 aa3.3□□□□□ -1.88
VPS13C-203ENST00000395896 SLC22A14Q9Y267 594 aa3.3□□□□□ -1.88
VPS13C-203ENST00000395896 FAM221BA6H8Z2 402 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 FADS2P1A8MWK0 482 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 MMP20O60882 483 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 MYCLP1P12525 358 aaPredicted RBP3.29□□□□□ -1.88
VPS13C-203ENST00000395896 MMP12P39900 470 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 ACTR1BP42025 376 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 MAGEA12P43365 314 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 TMED10P49755 219 aaKnown RBP3.29□□□□□ -1.88
VPS13C-203ENST00000395896 ACTR1AP61163 376 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 PGS1Q32NB8 556 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 USP39Q53GS9 565 aaKnown RBP3.29□□□□□ -1.88
VPS13C-203ENST00000395896 HLA-DQA1Q5Y7H0 255 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 RPL13AP3Q6NVV1 102 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 IGDCC3Q8IVU1 814 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 ENDOVQ8N8Q3 282 aaKnown RBP3.29□□□□□ -1.88
VPS13C-203ENST00000395896 OR52L1Q8NGH7 329 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 FCGR1BQ92637 280 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 TESCQ96BS2 214 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 WRAP53Q9BUR4 548 aaKnown RBP3.29□□□□□ -1.88
VPS13C-203ENST00000395896 ZFYVE26Q68DK2 2539 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 PTPN13Q12923 2485 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 TRANK1O15050 2925 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 A0A1W2PPC1 479 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 CAPN5O15484 640 aaPredicted RBP3.29□□□□□ -1.88
VPS13C-203ENST00000395896 TPST1O60507 370 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 CST1P01037 141 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 ITIH1P19827 911 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 TRA2BP62995 288 aaKnown RBP3.29□□□□□ -1.88
VPS13C-203ENST00000395896 PSPHP78330 225 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 PWP1Q13610 501 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 C2orf27AQ580R0 203 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 MANEAQ5SRI9 462 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 ATG9BQ674R7 924 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 NAIF1Q69YI7 327 aaPredicted RBP3.29□□□□□ -1.88
VPS13C-203ENST00000395896 LIN28BQ6ZN17 250 aaKnown RBP eCLIP3.29□□□□□ -1.881e-6■■■■□ 22
VPS13C-203ENST00000395896 LDB1Q86U70 411 aaPredicted RBP3.29□□□□□ -1.88
VPS13C-203ENST00000395896 ARMC8Q8IUR7 673 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 PLD6Q8N2A8 252 aaKnown RBP3.29□□□□□ -1.88
VPS13C-203ENST00000395896 TTC9BQ8N6N2 239 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 CYGBQ8WWM9 190 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 OR2M4Q96R27 311 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 CGREF1Q99674 301 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 RNF38Q9H0F5 515 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 EBF3Q9H4W6 596 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 S100A14Q9HCY8 104 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 TBC1D23Q9NUY8 699 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 TSC2P49815 1807 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 MED12Q93074 2177 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 PIP5K1BO14986 540 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 GSNP06396 782 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 NR2F1P10589 423 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 ANPEPP15144 967 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 CRATP43155 626 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 PRLHRP49683 370 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 CACNA2D1P54289 1103 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 NRLP54845 237 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 SLC25A3Q00325 362 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 ELOCQ15369 112 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 ZNF630Q2M218 657 aaPredicted RBP3.29□□□□□ -1.88
VPS13C-203ENST00000395896 CTC1Q2NKJ3 1217 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 LILRA6Q6PI73 481 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 SLC36A4Q6YBV0 504 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 GPR149Q86SP6 731 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 CLEC14AQ86T13 490 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 RTN4RL1Q86UN2 441 aaPredicted RBP3.29□□□□□ -1.88
VPS13C-203ENST00000395896 CROCCP3Q8IVE0 287 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 SPPL3Q8TCT6 385 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 ADAMTS15Q8TE58 950 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 EEF1AKMT1Q8WVE0 214 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 ZNF778Q96MU6 729 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 ATOH8Q96SQ7 321 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 SLC38A3Q99624 504 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 TBCDQ9BTW9 1192 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 RYDENQ9NUL5 291 aaKnown RBP3.29□□□□□ -1.88
VPS13C-203ENST00000395896 PNPOQ9NVS9 261 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 HEPACAM2A8MVW5 462 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 FFAR3O14843 346 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 GPR42O15529 346 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 TNFP01375 233 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 RPS17P08708 135 aaKnown RBP3.29□□□□□ -1.88
VPS13C-203ENST00000395896 ZCCHC18P0CG32 403 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 CLK3P49761 638 aaKnown RBP3.29□□□□□ -1.88
VPS13C-203ENST00000395896 CDC42P60953 191 aa3.29□□□□□ -1.88
VPS13C-203ENST00000395896 CREB5Q02930 508 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms