RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 SEMG2Q02383 582 aa12.35□□□□□ -0.43
SHMT1-205ENST00000395684 SMARCB1Q12824 385 aa12.35□□□□□ -0.43
SHMT1-205ENST00000395684 TTLL9Q3SXZ7 439 aa12.35□□□□□ -0.43
SHMT1-205ENST00000395684 AGAP7PQ5VUJ5 663 aa12.35□□□□□ -0.43
SHMT1-205ENST00000395684 PLEKHG7Q6ZR37 379 aa12.35□□□□□ -0.43
SHMT1-205ENST00000395684 PAGE2Q7Z2X7 111 aa12.35□□□□□ -0.43
SHMT1-205ENST00000395684 RNF175Q8N4F7 328 aa12.35□□□□□ -0.43
SHMT1-205ENST00000395684 WFDC5Q8TCV5 224 aa12.35□□□□□ -0.43
SHMT1-205ENST00000395684 BHMTQ93088 406 aa12.35□□□□□ -0.43
SHMT1-205ENST00000395684 POP5Q969H6 163 aaKnown RBP12.35□□□□□ -0.43
SHMT1-205ENST00000395684 APOL4Q9BPW4 351 aa12.35□□□□□ -0.43
SHMT1-205ENST00000395684 ELOVL6Q9H5J4 265 aa12.35□□□□□ -0.43
SHMT1-205ENST00000395684 TMEM161AQ9NX61 479 aa12.35□□□□□ -0.43
SHMT1-205ENST00000395684 ARL15Q9NXU5 204 aa12.35□□□□□ -0.43
SHMT1-205ENST00000395684 KCNE1BA0A087WTH5 132 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 PCDHGA12O60330 932 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 FAM20BO75063 409 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 CNOT3O75175 753 aaKnown RBP12.34□□□□□ -0.43
SHMT1-205ENST00000395684 WBP4O75554 376 aaKnown RBP12.34□□□□□ -0.43
SHMT1-205ENST00000395684 ARHGEF15O94989 841 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 FABP3P05413 133 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 HMGA1P17096 107 aaKnown RBP12.34□□□□□ -0.43
SHMT1-205ENST00000395684 FPR1P21462 350 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 TGFBR2P37173 567 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 TSPYL5Q86VY4 417 aaPredicted RBP12.34□□□□□ -0.43
SHMT1-205ENST00000395684 IFNL1Q8IU54 200 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 MINDY2Q8NBR6 621 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 FBXO22Q8NEZ5 403 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 APOLD1Q96LR9 279 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 CASD1Q96PB1 797 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 DPH2Q9BQC3 489 aaPredicted RBP12.34□□□□□ -0.43
SHMT1-205ENST00000395684 HTATIP2Q9BUP3 242 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 AFF4Q9UHB7 1163 aaKnown RBP12.34□□□□□ -0.43
SHMT1-205ENST00000395684 NUP214P35658 2090 aaPredicted RBP12.34□□□□□ -0.43
SHMT1-205ENST00000395684 CLIC1O00299 241 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 PRAMEF4O60810 478 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 CD36P16671 472 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 ENGP17813 658 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 KDELR2P33947 212 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 CSKP41240 450 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 FLT3LGP49771 235 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 ZNF157P51786 506 aaPredicted RBP12.34□□□□□ -0.43
SHMT1-205ENST00000395684 CREMQ03060 361 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 CRHR2Q13324 411 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 MAPK11Q15759 364 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 VMACQ2NL98 169 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 PRAMEF9Q5VWM5 478 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 KIAA1614Q5VZ46 1190 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 PRSS48Q7RTY5 328 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 ZZZ3Q8IYH5 903 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 ELMOD1Q8N336 334 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 BCL7CQ8WUZ0 217 aaPredicted RBP12.34□□□□□ -0.43
SHMT1-205ENST00000395684 APH1BQ8WW43 257 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 HPS1Q92902 700 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 SIGLEC11Q96RL6 698 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 KLF16Q9BXK1 252 aaPredicted RBP12.34□□□□□ -0.43
SHMT1-205ENST00000395684 OSGIN1Q9UJX0 560 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 SAMHD1Q9Y3Z3 626 aaKnown RBP12.34□□□□□ -0.43
SHMT1-205ENST00000395684 OR2A25A4D2G3 310 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 KRT87PA6NCN2 255 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 MANSC4A6NHS7 340 aaPredicted RBP12.34□□□□□ -0.43
SHMT1-205ENST00000395684 EVPLLA8MZ36 301 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 SEC24AO95486 1093 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 ALOX5P09917 674 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 CCR7P32248 378 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 RPP38P78345 283 aaKnown RBP12.34□□□□□ -0.43
SHMT1-205ENST00000395684 NEK5Q6P3R8 708 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 AHSA2Q719I0 299 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 TSPAN33Q86UF1 283 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 SLC22A16Q86VW1 577 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 PTOV1Q86YD1 416 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 NXPE1Q8N323 547 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 ATG16L2Q8NAA4 619 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 RHOXF1Q8NHV9 184 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 C2orf15Q8WU43 125 aaKnown RBP12.34□□□□□ -0.43
SHMT1-205ENST00000395684 ALG14Q96F25 216 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 HSH2DQ96JZ2 352 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 PANX1Q96RD7 426 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 TTPALQ9BTX7 342 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 EBPLQ9BY08 206 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 REXO4Q9GZR2 422 aaKnown RBP12.34□□□□□ -0.43
SHMT1-205ENST00000395684 DSN1Q9H410 356 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 KRT84Q9NSB2 600 aa12.34□□□□□ -0.43
SHMT1-205ENST00000395684 SCHIP1Q9P0W5 487 aaPredicted RBP12.34□□□□□ -0.43
SHMT1-205ENST00000395684 PIKFYVEQ9Y2I7 2098 aa12.33□□□□□ -0.44
SHMT1-205ENST00000395684 SCN2BO60939 215 aa12.33□□□□□ -0.44
SHMT1-205ENST00000395684 AMD1P17707 334 aa12.33□□□□□ -0.44
SHMT1-205ENST00000395684 GRK3P35626 688 aa12.33□□□□□ -0.44
SHMT1-205ENST00000395684 KIR3DL1P43629 444 aa12.33□□□□□ -0.44
SHMT1-205ENST00000395684 AP1S1P61966 158 aa12.33□□□□□ -0.44
SHMT1-205ENST00000395684 ANKS3Q6ZW76 656 aa12.33□□□□□ -0.44
SHMT1-205ENST00000395684 HORMAD1Q86X24 394 aa12.33□□□□□ -0.44
SHMT1-205ENST00000395684 ZSWIM9Q86XI8 627 aa12.33□□□□□ -0.44
SHMT1-205ENST00000395684 APCDD1Q8J025 514 aa12.33□□□□□ -0.44
SHMT1-205ENST00000395684 PGBD3Q8N328 593 aa12.33□□□□□ -0.44
SHMT1-205ENST00000395684 SVOPQ8N4V2 548 aa12.33□□□□□ -0.44
SHMT1-205ENST00000395684 GPR26Q8NDV2 337 aa12.33□□□□□ -0.44
SHMT1-205ENST00000395684 CMTM7Q96FZ5 175 aa12.33□□□□□ -0.44
SHMT1-205ENST00000395684 PRDM8Q9NQV8 689 aa12.33□□□□□ -0.44
SHMT1-205ENST00000395684 SLCO3A1Q9UIG8 710 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms