RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 GARNL3Q5VVW2 1013 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 KLC3Q6P597 504 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 CTAGE3PQ8IX95 158 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 KIAA2013Q8IYS2 634 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 C19orf47Q8N9M1 422 aaKnown RBP6.75□□□□□ -1.33
LIMA1-202ENST00000394943 OR2W6PQ8NHA6 318 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 USP7Q93009 1102 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 TEFMQ96QE5 360 aaKnown RBP6.75□□□□□ -1.33
LIMA1-202ENST00000394943 SLC29A3Q9BZD2 475 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 SLC6A16Q9GZN6 736 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 VPS11Q9H270 941 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 INTS7Q9NVH2 962 aaKnown RBP6.75□□□□□ -1.33
LIMA1-202ENST00000394943 SPHK1Q9NYA1 384 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 PCDHGA6Q9Y5G7 932 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 CCDC187A0A096LP49 1063 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 K7EPI3 171 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 NVLO15381 856 aaKnown RBP6.74□□□□□ -1.33
LIMA1-202ENST00000394943 WDR47O94967 919 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 MT-ND3P03897 115 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 ALOX15P16050 662 aaPredicted RBP6.74□□□□□ -1.33
LIMA1-202ENST00000394943 PIK3CBP42338 1070 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 ERVPABLB-1P60509 514 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 TBPL1P62380 186 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 MPP2Q14168 576 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 NXPE4Q6UWF7 544 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 FRMD7Q6ZUT3 714 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 ALYREFQ86V81 257 aaKnown RBP6.74□□□□□ -1.33
LIMA1-202ENST00000394943 DTX1Q86Y01 620 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 KIRREL3Q8IZU9 778 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 DEFB124Q8NES8 71 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 TRIM54Q9BYV2 358 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 ZNF225Q9UK10 706 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 TLK1Q9UKI8 766 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 SNX7Q9UNH6 387 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 RUVBL2Q9Y230 463 aaKnown RBP6.74□□□□□ -1.33
LIMA1-202ENST00000394943 CCL27Q9Y4X3 112 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 PIPSLA2A3N6 862 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 TMEM8BA6NDV4 472 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 POC1B-GALNT4F8VUJ3 575 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 BPGMP07738 259 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 EBLN1P0CF75 366 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 FGF3P11487 239 aaPredicted RBP6.74□□□□□ -1.33
LIMA1-202ENST00000394943 HSD3B1P14060 373 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 HSD3B2P26439 372 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 ABCG1P45844 678 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 GSTM5P46439 218 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 SCTRP47872 440 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 SLC12A2P55011 1212 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 PKNOX1P55347 436 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 ABRQ12979 859 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 PWP1Q13610 501 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 CAPN13Q6MZZ7 669 aaPredicted RBP6.74□□□□□ -1.33
LIMA1-202ENST00000394943 NIPAL1Q6NVV3 410 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 FBXO42Q6P3S6 717 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 VN1R5Q7Z5H4 357 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 THOC6Q86W42 341 aaKnown RBP6.74□□□□□ -1.33
LIMA1-202ENST00000394943 LCN9Q8WX39 176 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 MVB12AQ96EY5 273 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 PTCD3Q96EY7 689 aaKnown RBP6.74□□□□□ -1.33
LIMA1-202ENST00000394943 CNDP1Q96KN2 507 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 CCDC74BQ96LY2 380 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 QRFPRQ96P65 431 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 GFM1Q96RP9 751 aaKnown RBP6.74□□□□□ -1.33
LIMA1-202ENST00000394943 SLC38A3Q99624 504 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 DPH2Q9BQC3 489 aaPredicted RBP6.74□□□□□ -1.33
LIMA1-202ENST00000394943 SRMSQ9H3Y6 488 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 BRF2Q9HAW0 419 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 MED4Q9NPJ6 270 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 CCDC177Q9NQR7 707 aaPredicted RBP6.74□□□□□ -1.33
LIMA1-202ENST00000394943 IKBKGQ9Y6K9 419 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 SYNDIG1LA6NDD5 238 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 SRRM3A6NNA2 597 aaPredicted RBP6.74□□□□□ -1.33
LIMA1-202ENST00000394943 PIAS1O75925 651 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 ENO1P06733 434 aaKnown RBP6.74□□□□□ -1.33
LIMA1-202ENST00000394943 RAB40ALP0C0E4 278 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 HOXB3P14651 431 aaPredicted RBP6.74□□□□□ -1.33
LIMA1-202ENST00000394943 KRT15P19012 456 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 CD22P20273 847 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 PBLDP30039 288 aaPredicted RBP6.74□□□□□ -1.33
LIMA1-202ENST00000394943 CCT5P48643 541 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 RPS15AP62244 130 aaKnown RBP6.74□□□□□ -1.33
LIMA1-202ENST00000394943 HSD11B2P80365 405 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 N4BP2L1Q5TBK1 243 aaPredicted RBP6.74□□□□□ -1.33
LIMA1-202ENST00000394943 LIPMQ5VYY2 423 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 RD3Q7Z3Z2 195 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 LSMEM2Q8N112 164 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 TTLQ8NG68 377 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 SNIP1Q8TAD8 396 aaKnown RBP6.74□□□□□ -1.33
LIMA1-202ENST00000394943 FAM76AQ8TAV0 307 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 NAT14Q8WUY8 206 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 TGIF2Q9GZN2 237 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 SYNPO2LQ9H987 977 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 ASIC5Q9NY37 505 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 XPR1Q9UBH6 696 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 TDRD6O60522 2096 aaKnown RBP6.74□□□□□ -1.33
LIMA1-202ENST00000394943 PCSK5Q92824 1860 aa6.74□□□□□ -1.33
LIMA1-202ENST00000394943 IGHV5-51A0A0C4DH38 117 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 OR6C74A6NCV1 312 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 PDZK1P1A8MUH7 402 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 PCDH17O14917 1159 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms