RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 CLEC4FQ8N1N0 589 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 DDHD1Q8NEL9 900 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 ISOC1Q96CN7 298 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 RSPRY1Q96DX4 576 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 C11orf24Q96F05 449 aaPredicted RBP12.97□□□□□ -0.33
CCDC3-202ENST00000378839 HIST1H2AHQ96KK5 128 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 HIST1H2AJQ99878 128 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 H2AFJQ9BTM1 129 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 OSBPL10Q9BXB5 764 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 THG1LQ9NWX6 298 aaKnown RBP12.97□□□□□ -0.33
CCDC3-202ENST00000378839 TUBA8Q9NY65 449 aaPredicted RBP12.97□□□□□ -0.33
CCDC3-202ENST00000378839 SH2B3Q9UQQ2 575 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 COQ6Q9Y2Z9 468 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 NUP214P35658 2090 aaPredicted RBP12.97□□□□□ -0.33
CCDC3-202ENST00000378839 FAM220BPB1ANY3 271 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 DEAF1O75398 565 aaPredicted RBP12.97□□□□□ -0.33
CCDC3-202ENST00000378839 THRBP10828 461 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 JUPP14923 745 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 IL7RP16871 459 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 RAE1P78406 368 aaKnown RBP12.97□□□□□ -0.33
CCDC3-202ENST00000378839 LAPTM4AQ15012 233 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 CTU2Q2VPK5 515 aaKnown RBP12.97□□□□□ -0.33
CCDC3-202ENST00000378839 PRSS36Q5K4E3 855 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 CLVS1Q8IUQ0 354 aaPredicted RBP12.97□□□□□ -0.33
CCDC3-202ENST00000378839 CLECL1Q8IZS7 167 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 TNIP2Q8NFZ5 429 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 TESCQ96BS2 214 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 C8orf4Q9NR00 106 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 IFT80Q9P2H3 777 aaPredicted RBP12.97□□□□□ -0.33
CCDC3-202ENST00000378839 U3KQV3 271 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 SZT2Q5T011 3432 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 MTCL1Q9Y4B5 1905 aaKnown RBP12.97□□□□□ -0.33
CCDC3-202ENST00000378839 TSPAN11A1L157 253 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 K7ESM1 405 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 PLK4O00444 970 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 PSIP1O75475 530 aaKnown RBP12.97□□□□□ -0.33
CCDC3-202ENST00000378839 ATE1O95260 518 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 SOD1P00441 154 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 DOC2AQ14183 400 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 RAB39AQ14964 217 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 ZBED5Q49AG3 693 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 ZNF658BQ4V348 819 aaPredicted RBP12.97□□□□□ -0.33
CCDC3-202ENST00000378839 ELMSAN1Q6PJG2 1045 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 KCTD8Q6ZWB6 473 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 THOC6Q86W42 341 aaKnown RBP12.97□□□□□ -0.33
CCDC3-202ENST00000378839 ARL10Q8N8L6 244 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 VN1R2Q8NFZ6 395 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 FBXL8Q96CD0 374 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 ITCHQ96J02 903 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 UGT2B28Q9BY64 529 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 THEGQ9P2T0 379 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 DNAJB9Q9UBS3 223 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 PCDHGA8Q9Y5G5 932 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 C16orf96A6NNT2 1141 aa12.96□□□□□ -0.33
CCDC3-202ENST00000378839 NPIPB8E9PQR5 432 aa12.96□□□□□ -0.33
CCDC3-202ENST00000378839 H0YAE9 185 aa12.96□□□□□ -0.33
CCDC3-202ENST00000378839 SLC16A5O15375 505 aa12.96□□□□□ -0.33
CCDC3-202ENST00000378839 ERN1O75460 977 aaKnown RBP12.96□□□□□ -0.33
CCDC3-202ENST00000378839 CISD3P0C7P0 127 aa12.96□□□□□ -0.33
CCDC3-202ENST00000378839 DCDC1P59894 354 aa12.96□□□□□ -0.33
CCDC3-202ENST00000378839 POLR2LP62875 67 aaKnown RBP12.96□□□□□ -0.33
CCDC3-202ENST00000378839 MTAPQ13126 283 aa12.96□□□□□ -0.33
CCDC3-202ENST00000378839 SP140Q13342 867 aa12.96□□□□□ -0.33
CCDC3-202ENST00000378839 ZDHHC20Q5W0Z9 365 aa12.96□□□□□ -0.33
CCDC3-202ENST00000378839 GRASPQ7Z6J2 395 aaPredicted RBP12.96□□□□□ -0.33
CCDC3-202ENST00000378839 TCAIMQ8N3R3 496 aa12.96□□□□□ -0.33
CCDC3-202ENST00000378839 OR52E4Q8NGH9 312 aa12.96□□□□□ -0.33
CCDC3-202ENST00000378839 MCOLN3Q8TDD5 553 aa12.96□□□□□ -0.33
CCDC3-202ENST00000378839 BTN2A2Q8WVV5 523 aa12.96□□□□□ -0.33
CCDC3-202ENST00000378839 NCLNQ969V3 563 aa12.96□□□□□ -0.33
CCDC3-202ENST00000378839 DPH2Q9BQC3 489 aaPredicted RBP12.96□□□□□ -0.33
CCDC3-202ENST00000378839 REXO4Q9GZR2 422 aaKnown RBP12.96□□□□□ -0.33
CCDC3-202ENST00000378839 EXD2Q9NVH0 621 aa12.96□□□□□ -0.33
CCDC3-202ENST00000378839 FAM118AQ9NWS6 357 aa12.96□□□□□ -0.33
CCDC3-202ENST00000378839 STOX2Q9P2F5 926 aaPredicted RBP12.96□□□□□ -0.33
CCDC3-202ENST00000378839 TMEFF2Q9UIK5 374 aaPredicted RBP12.96□□□□□ -0.33
CCDC3-202ENST00000378839 FOXD2O60548 495 aaPredicted RBP12.96□□□□□ -0.33
CCDC3-202ENST00000378839 SCELO95171 688 aa12.96□□□□□ -0.33
CCDC3-202ENST00000378839 SLC16A8O95907 504 aa12.96□□□□□ -0.33
CCDC3-202ENST00000378839 ALBP02768 609 aa12.96□□□□□ -0.33
CCDC3-202ENST00000378839 GSTM1P09488 218 aa12.96□□□□□ -0.33
CCDC3-202ENST00000378839 PRPS2P11908 318 aa12.96□□□□□ -0.33
CCDC3-202ENST00000378839 ZNF30P17039 623 aa12.96□□□□□ -0.33
CCDC3-202ENST00000378839 CEBPBP17676 345 aa12.96□□□□□ -0.33
CCDC3-202ENST00000378839 POLR2EP19388 210 aaKnown RBP12.96□□□□□ -0.33
CCDC3-202ENST00000378839 DCTP40126 519 aa12.96□□□□□ -0.33
CCDC3-202ENST00000378839 GSTM4Q03013 218 aa12.96□□□□□ -0.33
CCDC3-202ENST00000378839 PIGFQ07326 219 aa12.96□□□□□ -0.33
CCDC3-202ENST00000378839 DDX39BQ13838 428 aaKnown RBP12.96□□□□□ -0.33
CCDC3-202ENST00000378839 XKR6Q5GH73 641 aa12.96□□□□□ -0.33
CCDC3-202ENST00000378839 PARS2Q7L3T8 475 aaKnown RBP12.96□□□□□ -0.33
CCDC3-202ENST00000378839 GPR155Q7Z3F1 870 aa12.96□□□□□ -0.33
CCDC3-202ENST00000378839 TRAM1L1Q8N609 369 aa12.96□□□□□ -0.33
CCDC3-202ENST00000378839 C12orf43Q96C57 262 aaKnown RBP12.96□□□□□ -0.33
CCDC3-202ENST00000378839 FAM120BQ96EK7 910 aaKnown RBP12.96□□□□□ -0.33
CCDC3-202ENST00000378839 PKP4Q99569 1192 aa12.96□□□□□ -0.33
CCDC3-202ENST00000378839 WRAP53Q9BUR4 548 aaKnown RBP12.96□□□□□ -0.33
CCDC3-202ENST00000378839 IL36AQ9UHA7 158 aa12.96□□□□□ -0.33
CCDC3-202ENST00000378839 IRAK3Q9Y616 596 aa12.96□□□□□ -0.33
CCDC3-202ENST00000378839 OTOL1A6NHN0 477 aaPredicted RBP12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms