RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 ACVR2BQ13705 512 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 SGCAQ16586 387 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 ZBTB46Q86UZ6 589 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP4.55□□□□□ -1.68
SCN1A-202ENST00000375405 ZNF676Q8N7Q3 588 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 SLC43A3Q8NBI5 491 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 NUDT10Q8NFP7 164 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 ASB15Q8WXK1 588 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 H1FXQ92522 213 aaKnown RBP4.55□□□□□ -1.68
SCN1A-202ENST00000375405 NUDT11Q96G61 164 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 ZNF382Q96SR6 550 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 TIMP4Q99727 224 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 NKX3-1Q99801 234 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-202ENST00000375405 TINAGL1Q9GZM7 467 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-202ENST00000375405 CDHR5Q9HBB8 845 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 CPNE5Q9HCH3 593 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 ZNF223Q9UK11 482 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-202ENST00000375405 CLUHO75153 1309 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 LOC102723971A0A1B0GUV8 181 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 ZNF705GA8MUZ8 300 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-202ENST00000375405 SH2B2O14492 632 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-202ENST00000375405 OR10J4P0C629 311 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 PABPC4LP0CB38 370 aaKnown RBP4.55□□□□□ -1.68
SCN1A-202ENST00000375405 CHRNB1P11230 501 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 CYP2C18P33260 490 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 MXD1Q05195 221 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 FASTKQ14296 549 aaKnown RBP4.55□□□□□ -1.68
SCN1A-202ENST00000375405 RASA2Q15283 850 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 MAB21L3Q8N8X9 362 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 OR5K1Q8NHB7 308 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 DPF2Q92785 391 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 NELL1Q92832 810 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 SH3YL1Q96HL8 342 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-202ENST00000375405 LENG8Q96PV6 779 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-202ENST00000375405 RBM15Q96T37 977 aaKnown RBP eCLIP4.55□□□□□ -1.68
SCN1A-202ENST00000375405 CMKLR1Q99788 373 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 WWTR1Q9GZV5 400 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 ATG5Q9H1Y0 275 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 MEPEQ9NQ76 525 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-202ENST00000375405 FBXO28Q9NVF7 368 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 ABRACLQ9P1F3 81 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 NUFIP1Q9UHK0 495 aaKnown RBP4.55□□□□□ -1.68
SCN1A-202ENST00000375405 ADAM28Q9UKQ2 775 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 ATXN7L1Q9ULK2 861 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-202ENST00000375405 ITSN2Q9NZM3 1697 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 CD109Q6YHK3 1445 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 NRCAMQ92823 1304 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 NCBP2LA6PVI3 153 aaKnown RBP4.54□□□□□ -1.68
SCN1A-202ENST00000375405 RAB27BO00194 218 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 OGTO15294 1046 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 AHCYL1O43865 530 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 PRAMEF12O95522 483 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 ANXA3P12429 323 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 IL7RP16871 459 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 HOXD11P31277 338 aaPredicted RBP4.54□□□□□ -1.68
SCN1A-202ENST00000375405 PNPLA4P41247 253 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 GNPDA1P46926 289 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 SCNN1GP51170 649 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 CHRNEQ04844 493 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 OPCMLQ14982 345 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 SF3A2Q15428 464 aaKnown RBP4.54□□□□□ -1.68
SCN1A-202ENST00000375405 KIAA0895LQ68EN5 471 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 EIF5AL1Q6IS14 154 aaKnown RBP4.54□□□□□ -1.68
SCN1A-202ENST00000375405 CAMKMTQ7Z624 323 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 BPHLQ86WA6 291 aaPredicted RBP4.54□□□□□ -1.68
SCN1A-202ENST00000375405 GPR151Q8TDV0 419 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 APH1BQ8WW43 257 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 SNAPC3Q92966 411 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 EXOSC8Q96B26 276 aaKnown RBP4.54□□□□□ -1.68
SCN1A-202ENST00000375405 RRNAD1Q96FB5 475 aaKnown RBP4.54□□□□□ -1.68
SCN1A-202ENST00000375405 RPL10LQ96L21 214 aaKnown RBP4.54□□□□□ -1.68
SCN1A-202ENST00000375405 ADAD1Q96M93 576 aaKnown RBP4.54□□□□□ -1.68
SCN1A-202ENST00000375405 CEP41Q9BYV8 373 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 CALML5Q9NZT1 146 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 TRHDEQ9UKU6 1024 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 PCDHGB2Q9Y5G2 931 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 PCDHGA9Q9Y5G4 932 aaKnown RBP4.54□□□□□ -1.68
SCN1A-202ENST00000375405 FADS3Q9Y5Q0 445 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 SNCAIPQ9Y6H5 919 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 PMS2P1A4D2B8 440 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 MIF4GDA9UHW6 222 aaKnown RBP4.54□□□□□ -1.68
SCN1A-202ENST00000375405 H7C2Y5 167 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 M0QZ24 198 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 MAN2B1O00754 1011 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 CHST10O43529 356 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 LYZL6O75951 148 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 JCHAINP01591 159 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 THRAP10827 490 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 CD79AP11912 226 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 DGKAP23743 735 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 CCR1P32246 355 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 LIFRP42702 1097 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 ABCG1P45844 678 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 FNTBP49356 437 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 MRPL19P49406 292 aaKnown RBP4.54□□□□□ -1.68
SCN1A-202ENST00000375405 KCNC4Q03721 635 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 PLEKHG7Q6ZR37 379 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 CYB5R4Q7L1T6 521 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 NPAS4Q8IUM7 802 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 SLC35F5Q8WV83 523 aa4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms