RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 MIEF2Q96C03 454 aa8.05□□□□□ -1.12
HMGB1P39-201ENST00000366304 SCMH1Q96GD3 660 aa8.05□□□□□ -1.12
HMGB1P39-201ENST00000366304 C10orf90Q96M02 699 aa8.05□□□□□ -1.12
HMGB1P39-201ENST00000366304 OLFM3Q96PB7 478 aa8.05□□□□□ -1.12
HMGB1P39-201ENST00000366304 ZNF670Q9BS34 389 aa8.05□□□□□ -1.12
HMGB1P39-201ENST00000366304 POLDIP3Q9BY77 421 aaKnown RBP8.05□□□□□ -1.12
HMGB1P39-201ENST00000366304 ZNF700Q9H0M5 742 aa8.05□□□□□ -1.12
HMGB1P39-201ENST00000366304 TRABDQ9H4I3 376 aa8.05□□□□□ -1.12
HMGB1P39-201ENST00000366304 ASB8Q9H765 288 aa8.05□□□□□ -1.12
HMGB1P39-201ENST00000366304 TDRKHQ9Y2W6 561 aaKnown RBP8.05□□□□□ -1.12
HMGB1P39-201ENST00000366304 SCINQ9Y6U3 715 aa8.05□□□□□ -1.12
HMGB1P39-201ENST00000366304 LOC102723996A0A087X1L8 192 aa8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 IGHV3-20A0A0C4DH32 117 aa8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 HYKKA2RU49 373 aa8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 KLHL33A6NCF5 533 aa8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 C3orf70A6NLC5 250 aaPredicted RBP8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 LRRC53A6NM62 1247 aa8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 A8MUI8 341 aa8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 LGALS16A8MUM7 142 aa8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 FOXO6A8MYZ6 492 aa8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 IFRD1O00458 451 aaPredicted RBP8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 RRP9O43818 475 aaKnown RBP8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 KLK8O60259 260 aa8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 PIM1P11309 404 aaPredicted RBP8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 GZMAP12544 262 aa8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 NFKB1P19838 968 aa8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 MX2P20592 715 aa8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 PTPN3P26045 913 aa8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 HOXC12P31275 282 aa8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 RAB28P51157 221 aa8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 EMP2P54851 167 aa8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 GDF10P55107 478 aa8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 VSX2P58304 361 aaPredicted RBP8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 YBX1P67809 324 aaKnown RBP8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 WASHC5Q12768 1159 aa8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 FASTKQ14296 549 aaKnown RBP8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 GRM7Q14831 915 aa8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 SLC1A5Q15758 541 aa8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 EMC4Q5J8M3 183 aa8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 WASHC2DQ5SRD0 308 aa8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 ZNF468Q5VIY5 522 aaPredicted RBP8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 ZDHHC20Q5W0Z9 365 aa8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 CES4AQ5XG92 561 aa8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 TMEM214Q6NUQ4 689 aaKnown RBP8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 GLT6D1Q7Z4J2 308 aa8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 CD163Q86VB7 1156 aa8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 TAX1BP1Q86VP1 789 aa8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 ZNF227Q86WZ6 799 aa8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 ZZZ3Q8IYH5 903 aa8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 AMER3Q8N944 861 aa8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 KCTD6Q8NC69 237 aa8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 OR4K2Q8NGD2 314 aa8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 SUN3Q8TAQ9 357 aa8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 MBD6Q96DN6 1003 aa8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 IL17FQ96PD4 163 aa8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 RNF157Q96PX1 679 aa8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 ERGIC2Q96RQ1 377 aa8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 SRPK1Q96SB4 655 aaKnown RBP8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 GORASP1Q9BQQ3 440 aa8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 THAP2Q9H0W7 228 aa8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 ISCUQ9H1K1 167 aa8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 ZNF304Q9HCX3 659 aa8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 TIMMDC1Q9NPL8 285 aa8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 HAUS2Q9NVX0 235 aa8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 COQ3Q9NZJ6 369 aa8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 OR6C2Q9NZP2 312 aa8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 ZNF282Q9UDV7 671 aaPredicted RBP8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 DYRK1BQ9Y463 629 aa8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 HEY1Q9Y5J3 304 aa8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 PRSS21Q9Y6M0 314 aa8.04□□□□□ -1.12
HMGB1P39-201ENST00000366304 IGLV3-16A0A075B6K0 115 aa8.03□□□□□ -1.12
HMGB1P39-201ENST00000366304 A0A0A6YYK5 440 aaPredicted RBP8.03□□□□□ -1.12
HMGB1P39-201ENST00000366304 FAM237BA0A1B0GVD1 139 aa8.03□□□□□ -1.12
HMGB1P39-201ENST00000366304 KRT87PA6NCN2 255 aa8.03□□□□□ -1.12
HMGB1P39-201ENST00000366304 OR2W5A6NFC9 320 aa8.03□□□□□ -1.12
HMGB1P39-201ENST00000366304 STX7O15400 261 aaKnown RBP8.03□□□□□ -1.12
HMGB1P39-201ENST00000366304 TTI1O43156 1089 aa8.03□□□□□ -1.12
HMGB1P39-201ENST00000366304 NEURL1O76050 574 aa8.03□□□□□ -1.12
HMGB1P39-201ENST00000366304 SEC24DO94855 1032 aaPredicted RBP8.03□□□□□ -1.12
HMGB1P39-201ENST00000366304 ATE1O95260 518 aa8.03□□□□□ -1.12
HMGB1P39-201ENST00000366304 TSPAN12O95859 305 aa8.03□□□□□ -1.12
HMGB1P39-201ENST00000366304 AGTP01019 485 aa8.03□□□□□ -1.12
HMGB1P39-201ENST00000366304 C8BP07358 591 aa8.03□□□□□ -1.12
HMGB1P39-201ENST00000366304 PYGMP11217 842 aa8.03□□□□□ -1.12
HMGB1P39-201ENST00000366304 SKILP12757 684 aa8.03□□□□□ -1.12
HMGB1P39-201ENST00000366304 ATP1B2P14415 290 aaPredicted RBP8.03□□□□□ -1.12
HMGB1P39-201ENST00000366304 CDK11BP21127 795 aaKnown RBP8.03□□□□□ -1.12
HMGB1P39-201ENST00000366304 DNASE1P24855 282 aa8.03□□□□□ -1.12
HMGB1P39-201ENST00000366304 ADSLP30566 484 aaPredicted RBP8.03□□□□□ -1.12
HMGB1P39-201ENST00000366304 PKLRP30613 574 aa8.03□□□□□ -1.12
HMGB1P39-201ENST00000366304 CHRNB4P30926 498 aa8.03□□□□□ -1.12
HMGB1P39-201ENST00000366304 PRKCIP41743 596 aa8.03□□□□□ -1.12
HMGB1P39-201ENST00000366304 SSR1P43307 286 aaKnown RBP8.03□□□□□ -1.12
HMGB1P39-201ENST00000366304 UBXN1Q04323 297 aa8.03□□□□□ -1.12
HMGB1P39-201ENST00000366304 MSLNQ13421 630 aaPredicted RBP8.03□□□□□ -1.12
HMGB1P39-201ENST00000366304 GRB7Q14451 532 aa8.03□□□□□ -1.12
HMGB1P39-201ENST00000366304 KIR2DS3Q14952 304 aa8.03□□□□□ -1.12
HMGB1P39-201ENST00000366304 BRD3Q15059 726 aa8.03□□□□□ -1.12
HMGB1P39-201ENST00000366304 OR1C1Q15619 314 aa8.03□□□□□ -1.12
HMGB1P39-201ENST00000366304 SYT16Q17RD7 645 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms