RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 GJA9P57773 515 aa19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 ARL9Q6T311 187 aa19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 KBTBD6Q86V97 674 aa19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 ANKRD13BQ86YJ7 626 aa19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 SLC15A4Q8N697 577 aa19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 SOCS4Q8WXH5 440 aa19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 CYP2S1Q96SQ9 504 aa19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 IFT27Q9BW83 186 aa19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 MND1Q9BWT6 205 aa19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 MARK1Q9P0L2 795 aa19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 FXYD6-FXYD2A0A087WZ82 144 aa19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 INMT-MINDY4F8WBC2 141 aa19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 CHRM1P11229 460 aaPredicted RBP19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 NKX2-5P52952 324 aaPredicted RBP19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 RELAQ04206 551 aa19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 UGT8Q16880 541 aa19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 PLA2G4EQ3MJ16 856 aa19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 TREML2Q5T2D2 321 aa19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 CLEC20AQ6ZU45 233 aa19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 MOB2Q70IA6 237 aa19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 AMIGO1Q86WK6 493 aa19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 MAPKAP1Q9BPZ7 522 aa19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 FXYD6Q9H0Q3 95 aa19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 ASAH2Q9NR71 780 aa19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 TRBC2A0A5B9 178 aa19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 SCGNO76038 276 aa19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 GLUD1P00367 558 aa19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 HLA-DPB1P04440 258 aa19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 C7P10643 843 aa19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 PRR5P85299 388 aa19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 C4orf46Q504U0 113 aa19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 PTPN18Q99952 460 aa19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 ASPNQ9BXN1 380 aa19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 TM9SF3Q9HD45 589 aa19.06■□□□□ 0.64
CCDC88B-202ENST00000356786 PNLIPRP1P54315 467 aa19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 SULT2A1Q06520 285 aa19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 OR52E8Q6IFG1 317 aa19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 LBX2Q6XYB7 198 aa19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 GALNTL5Q7Z4T8 443 aa19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 SLC35G5Q96KT7 338 aa19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 GPER1Q99527 375 aa19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 MKS1Q9NXB0 559 aa19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 ERVK-18Q9QC07 812 aa19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 CACNG4Q9UBN1 327 aa19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 HCN2Q9UL51 889 aa19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 SLC27A6Q9Y2P4 619 aa19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 SPEF2Q9C093 1822 aa19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 OR2AT4A6NND4 320 aa19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 MATN1P21941 496 aa19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 ZNF81P51508 661 aa19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 CLCN2P51788 898 aa19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 ARHGDIBP52566 201 aa19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 TSPAN5P62079 268 aa19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 ZNF678Q5SXM1 525 aa19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 SRFBP1Q8NEF9 429 aaKnown RBP19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 C7orf57Q8NEG2 295 aa19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 AKAP1Q92667 903 aaKnown RBP eCLIP19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 CNDP2Q96KP4 475 aaKnown RBP19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 SLC35A5Q9BS91 424 aa19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 TMED9Q9BVK6 235 aa19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 FUNDC2Q9BWH2 189 aa19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 OXCT2Q9BYC2 517 aaPredicted RBP19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 CALML5Q9NZT1 146 aa19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 TLX2O43763 284 aaPredicted RBP19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 RFPL2O75678 378 aa19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 NPPAP01160 153 aa19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 HCAR3P49019 387 aa19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 DNAJB13P59910 316 aa19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 RAB2AP61019 212 aa19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 SIX1Q15475 284 aaPredicted RBP19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 SIRPB2Q5JXA9 342 aa19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 MSANTD2Q6P1R3 559 aa19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 TTYH2Q9BSA4 534 aa19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 ZCCHC3Q9NUD5 404 aaKnown RBP19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 TAS2R9Q9NYW1 312 aa19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 SOCS2O14508 198 aa19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 SEPT4O43236 478 aa19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 H1F0P07305 194 aaKnown RBP19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 ATP4BP51164 291 aa19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 AQP11Q8NBQ7 271 aa19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 OR10G6Q8NH81 332 aa19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 OR5AK3PQ8NH89 298 aa19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 ZNF563Q8TA94 476 aa19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 SLC35F5Q8WV83 523 aa19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 ZBED6CLQ96FA7 236 aaPredicted RBP19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 GTPBP2Q9BX10 602 aaKnown RBP19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 GPR88Q9GZN0 384 aa19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 USP29Q9HBJ7 922 aa19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 ZNF214Q9UL59 606 aaPredicted RBP19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 ERVK-11Q9UQG0 969 aa19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 CMAHPQ9Y471 501 aa19.05■□□□□ 0.64
CCDC88B-202ENST00000356786 COL1A1P02452 1464 aaPredicted RBP19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 SAP18O00422 153 aaKnown RBP19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 GDF5P43026 501 aa19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 EMX2Q04743 252 aa19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 FRG2Q64ET8 278 aa19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 SLC30A6Q6NXT4 461 aa19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 ATCAYQ86WG3 371 aa19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 IFNLR1Q8IU57 520 aaPredicted RBP19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 UTP4Q969X6 686 aaKnown RBP19.04■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms