RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 SLC25A18Q9H1K4 315 aa8.17□□□□□ -1.1
HMGB1-203ENST00000341423 SLC25A51Q9H1U9 297 aa8.17□□□□□ -1.1
HMGB1-203ENST00000341423 ATXN7L1Q9ULK2 861 aaPredicted RBP8.17□□□□□ -1.1
HMGB1-203ENST00000341423 PROCRQ9UNN8 238 aa8.17□□□□□ -1.1
HMGB1-203ENST00000341423 PCDHGA10Q9Y5H3 936 aa8.17□□□□□ -1.1
HMGB1-203ENST00000341423 PDE9AO76083 593 aa8.17□□□□□ -1.1
HMGB1-203ENST00000341423 PDGFBP01127 241 aaPredicted RBP8.17□□□□□ -1.1
HMGB1-203ENST00000341423 DLX2Q07687 328 aaPredicted RBP8.17□□□□□ -1.1
HMGB1-203ENST00000341423 ITIH4Q14624 930 aa8.17□□□□□ -1.1
HMGB1-203ENST00000341423 TERF2Q15554 542 aa8.17□□□□□ -1.1
HMGB1-203ENST00000341423 COL28A1Q2UY09 1125 aa8.17□□□□□ -1.1
HMGB1-203ENST00000341423 TEDDM1Q5T9Z0 273 aa8.17□□□□□ -1.1
HMGB1-203ENST00000341423 ZCCHC12Q6PEW1 402 aa8.17□□□□□ -1.1
HMGB1-203ENST00000341423 SH2D3CQ8N5H7 860 aa8.17□□□□□ -1.1
HMGB1-203ENST00000341423 OR13H1Q8NG92 308 aa8.17□□□□□ -1.1
HMGB1-203ENST00000341423 PPP1R35Q8TAP8 253 aa8.17□□□□□ -1.1
HMGB1-203ENST00000341423 ZNF418Q8TF45 676 aaPredicted RBP8.17□□□□□ -1.1
HMGB1-203ENST00000341423 SGCDQ92629 289 aa8.17□□□□□ -1.1
HMGB1-203ENST00000341423 GLYATL1Q969I3 302 aa8.17□□□□□ -1.1
HMGB1-203ENST00000341423 EXOSC8Q96B26 276 aaKnown RBP8.17□□□□□ -1.1
HMGB1-203ENST00000341423 EFHD2Q96C19 240 aaPredicted RBP8.17□□□□□ -1.1
HMGB1-203ENST00000341423 ZNF597Q96LX8 424 aa8.17□□□□□ -1.1
HMGB1-203ENST00000341423 NTMT1Q9BV86 223 aa8.17□□□□□ -1.1
HMGB1-203ENST00000341423 RBCK1Q9BYM8 510 aa8.17□□□□□ -1.1
HMGB1-203ENST00000341423 UBTD1Q9HAC8 227 aa8.17□□□□□ -1.1
HMGB1-203ENST00000341423 ZC4H2Q9NQZ6 224 aa8.17□□□□□ -1.1
HMGB1-203ENST00000341423 NOCTQ9UK39 431 aaKnown RBP8.17□□□□□ -1.1
HMGB1-203ENST00000341423 ADAM18Q9Y3Q7 739 aa8.17□□□□□ -1.1
HMGB1-203ENST00000341423 IGKV6D-41A0A0C4DH26 115 aa8.17□□□□□ -1.1
HMGB1-203ENST00000341423 GRID2IPA4D2P6 1211 aa8.17□□□□□ -1.1
HMGB1-203ENST00000341423 RGSL1A5PLK6 1076 aa8.17□□□□□ -1.1
HMGB1-203ENST00000341423 SLC16A5O15375 505 aa8.17□□□□□ -1.1
HMGB1-203ENST00000341423 DDAH2O95865 285 aa8.17□□□□□ -1.1
HMGB1-203ENST00000341423 DDCP20711 480 aa8.17□□□□□ -1.1
HMGB1-203ENST00000341423 SNRPD2P62316 118 aaKnown RBP8.17□□□□□ -1.1
HMGB1-203ENST00000341423 CCZ1BP86790 482 aa8.17□□□□□ -1.1
HMGB1-203ENST00000341423 CCZ1P86791 482 aaPredicted RBP8.17□□□□□ -1.1
HMGB1-203ENST00000341423 AIMP2Q13155 320 aaKnown RBP8.17□□□□□ -1.1
HMGB1-203ENST00000341423 ENPP2Q13822 863 aa8.17□□□□□ -1.1
HMGB1-203ENST00000341423 DOC2AQ14183 400 aa8.17□□□□□ -1.1
HMGB1-203ENST00000341423 KRT80Q6KB66 452 aa8.17□□□□□ -1.1
HMGB1-203ENST00000341423 CCDC121Q6ZUS5 278 aa8.17□□□□□ -1.1
HMGB1-203ENST00000341423 MRGPRGQ86SM5 289 aa8.17□□□□□ -1.1
HMGB1-203ENST00000341423 ANKMY2Q8IV38 441 aa8.17□□□□□ -1.1
HMGB1-203ENST00000341423 HAS1Q92839 578 aa8.17□□□□□ -1.1
HMGB1-203ENST00000341423 HDAC10Q969S8 669 aa8.17□□□□□ -1.1
HMGB1-203ENST00000341423 SLC25A36Q96CQ1 311 aa8.17□□□□□ -1.1
HMGB1-203ENST00000341423 REPIN1Q9BWE0 567 aaKnown RBP8.17□□□□□ -1.1
HMGB1-203ENST00000341423 HDHD5Q9BXW7 423 aa8.17□□□□□ -1.1
HMGB1-203ENST00000341423 ZBTB20Q9HC78 741 aaPredicted RBP8.17□□□□□ -1.1
HMGB1-203ENST00000341423 HMGXB4Q9UGU5 601 aa8.17□□□□□ -1.1
HMGB1-203ENST00000341423 CIDEBQ9UHD4 219 aa8.17□□□□□ -1.1
HMGB1-203ENST00000341423 DMGDHQ9UI17 866 aaKnown RBP8.17□□□□□ -1.1
HMGB1-203ENST00000341423 EFR3BQ9Y2G0 817 aa8.17□□□□□ -1.1
HMGB1-203ENST00000341423 GRIP1Q9Y3R0 1128 aa8.17□□□□□ -1.1
HMGB1-203ENST00000341423 TUBAL3A6NHL2 446 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 ELOA3DA6NLF2 546 aaPredicted RBP8.16□□□□□ -1.1
HMGB1-203ENST00000341423 CTIFO43310 598 aaKnown RBP8.16□□□□□ -1.1
HMGB1-203ENST00000341423 POU2F2P09086 479 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 PRF1P14222 555 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 CCNCP24863 283 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 SERPINB1P30740 379 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 S100A3P33764 101 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 PMS2P54278 862 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 SPARCL1Q14515 664 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 SLC10A1Q14973 349 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 ELOA3BQ3SY89 546 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 PDCD4Q53EL6 469 aaKnown RBP8.16□□□□□ -1.1
HMGB1-203ENST00000341423 SLC22A25Q6T423 547 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 SHISA6Q6ZSJ9 500 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 TAS1R1Q7RTX1 841 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 SMYD1Q8NB12 490 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 ELOA3Q8NG57 546 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 SLC35G2Q8TBE7 412 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 EXTL1Q92935 676 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 BIRC7Q96CA5 298 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 EFCAB11Q9BUY7 163 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 ASPNQ9BXN1 380 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 ING2Q9H160 280 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 IKZF4Q9H2S9 585 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 RIBC2Q9H4K1 309 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 SOX17Q9H6I2 414 aaPredicted RBP8.16□□□□□ -1.1
HMGB1-203ENST00000341423 NOP16Q9Y3C1 178 aaKnown RBP8.16□□□□□ -1.1
HMGB1-203ENST00000341423 DUXAA6NLW8 204 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 MPPED1O15442 326 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 KDELR3O43731 214 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 PCDHGA12O60330 932 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 ACTL6BO94805 426 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 PTHP01270 115 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 CLNS1AP54105 237 aaKnown RBP8.16□□□□□ -1.1
HMGB1-203ENST00000341423 OR1D5P58170 312 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 CTBSQ01459 385 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 DSC2Q02487 901 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 PLGLAQ15195 96 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 CPSF6Q16630 551 aaKnown RBP eCLIP8.16□□□□□ -1.13e-18■■□□□ 11.5
HMGB1-203ENST00000341423 PMS2CLQ68D20 193 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 SYCE2Q6PIF2 218 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 BPIFB2Q8N4F0 458 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 TEX9Q8N6V9 391 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 PHOSPHO1Q8TCT1 267 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms