RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 MED26O95402 600 aa13.16□□□□□ -0.3
RFFL-201ENST00000315249 OAS1P00973 400 aaKnown RBP13.16□□□□□ -0.3
RFFL-201ENST00000315249 RPS13P62277 151 aaKnown RBP13.16□□□□□ -0.3
RFFL-201ENST00000315249 RPS15P62841 145 aaKnown RBP13.16□□□□□ -0.3
RFFL-201ENST00000315249 EIPR1Q53HC9 387 aa13.16□□□□□ -0.3
RFFL-201ENST00000315249 MTX3Q5HYI7 312 aa13.16□□□□□ -0.3
RFFL-201ENST00000315249 RTKNQ9BST9 563 aa13.16□□□□□ -0.3
RFFL-201ENST00000315249 OR51B5Q9H339 312 aa13.16□□□□□ -0.3
RFFL-201ENST00000315249 ZNF358Q9NW07 568 aa13.16□□□□□ -0.3
RFFL-201ENST00000315249 CFL2Q9Y281 166 aa13.16□□□□□ -0.3
RFFL-201ENST00000315249 PSMD9O00233 223 aa13.15□□□□□ -0.3
RFFL-201ENST00000315249 NME6O75414 186 aaPredicted RBP13.15□□□□□ -0.3
RFFL-201ENST00000315249 PSMG1O95456 288 aa13.15□□□□□ -0.3
RFFL-201ENST00000315249 FABP3P05413 133 aa13.15□□□□□ -0.3
RFFL-201ENST00000315249 KLF1Q13351 362 aaPredicted RBP13.15□□□□□ -0.3
RFFL-201ENST00000315249 SIM2Q14190 667 aaPredicted RBP13.15□□□□□ -0.3
RFFL-201ENST00000315249 QPCTQ16769 361 aa13.15□□□□□ -0.3
RFFL-201ENST00000315249 UBAP2Q5T6F2 1119 aaKnown RBP13.15□□□□□ -0.3
RFFL-201ENST00000315249 ZCCHC12Q6PEW1 402 aa13.15□□□□□ -0.3
RFFL-201ENST00000315249 AGTRAPQ6RW13 159 aa13.15□□□□□ -0.3
RFFL-201ENST00000315249 KCTD8Q6ZWB6 473 aa13.15□□□□□ -0.3
RFFL-201ENST00000315249 PHOSPHO1Q8TCT1 267 aa13.15□□□□□ -0.3
RFFL-201ENST00000315249 SLC17A9Q9BYT1 436 aa13.15□□□□□ -0.3
RFFL-201ENST00000315249 SDHAF3Q9NRP4 125 aa13.15□□□□□ -0.3
RFFL-201ENST00000315249 RASSF1Q9NS23 344 aa13.15□□□□□ -0.3
RFFL-201ENST00000315249 FAM214AQ32MH5 1076 aa13.15□□□□□ -0.3
RFFL-201ENST00000315249 SPANXN2Q5MJ10 180 aa13.15□□□□□ -0.3
RFFL-201ENST00000315249 HPS6Q86YV9 775 aa13.15□□□□□ -0.3
RFFL-201ENST00000315249 SLC39A11Q8N1S5 342 aa13.15□□□□□ -0.3
RFFL-201ENST00000315249 NELL2Q99435 816 aa13.15□□□□□ -0.3
RFFL-201ENST00000315249 PADI2Q9Y2J8 665 aa13.15□□□□□ -0.3
RFFL-201ENST00000315249 HCFC2Q9Y5Z7 792 aa13.15□□□□□ -0.3
RFFL-201ENST00000315249 C6P13671 934 aa13.15□□□□□ -0.3
RFFL-201ENST00000315249 TIMM50Q3ZCQ8 353 aa13.15□□□□□ -0.3
RFFL-201ENST00000315249 SLC36A4Q6YBV0 504 aa13.15□□□□□ -0.3
RFFL-201ENST00000315249 CXXC5Q7LFL8 322 aaKnown RBP13.15□□□□□ -0.3
RFFL-201ENST00000315249 SNX33Q8WV41 574 aa13.15□□□□□ -0.3
RFFL-201ENST00000315249 PIWIL1Q96J94 861 aaKnown RBP13.15□□□□□ -0.3
RFFL-201ENST00000315249 LOC730098B7Z3J9 87 aa13.15□□□□□ -0.3
RFFL-201ENST00000315249 SLC35A5Q9BS91 424 aa13.15□□□□□ -0.3
RFFL-201ENST00000315249 GDE1Q9NZC3 331 aa13.15□□□□□ -0.3
RFFL-201ENST00000315249 FADS2P1A8MWK0 482 aa13.15□□□□□ -0.3
RFFL-201ENST00000315249 PLIN3O60664 434 aa13.15□□□□□ -0.3
RFFL-201ENST00000315249 GDI2P50395 445 aaKnown RBP13.15□□□□□ -0.3
RFFL-201ENST00000315249 EIF4HQ15056 248 aaKnown RBP13.15□□□□□ -0.3
RFFL-201ENST00000315249 PTCHD3Q3KNS1 767 aa13.15□□□□□ -0.3
RFFL-201ENST00000315249 FBXO43Q4G163 708 aa13.15□□□□□ -0.3
RFFL-201ENST00000315249 NAT8LQ8N9F0 302 aa13.15□□□□□ -0.3
RFFL-201ENST00000315249 OR2AJ1Q8NGZ0 328 aa13.15□□□□□ -0.3
RFFL-201ENST00000315249 LRIG1Q96JA1 1093 aa13.15□□□□□ -0.3
RFFL-201ENST00000315249 SPATA2Q9UM82 520 aa13.15□□□□□ -0.3
RFFL-201ENST00000315249 TMEM265A0A087WTH1 108 aa13.15□□□□□ -0.3
RFFL-201ENST00000315249 DUXAA6NLW8 204 aa13.15□□□□□ -0.3
RFFL-201ENST00000315249 GSRP00390 522 aa13.15□□□□□ -0.3
RFFL-201ENST00000315249 DRICH1Q6PGQ1 229 aaPredicted RBP13.15□□□□□ -0.3
RFFL-201ENST00000315249 COL16A1Q07092 1604 aaPredicted RBP13.14□□□□□ -0.31
RFFL-201ENST00000315249 FAM92AA1XBS5 289 aa13.14□□□□□ -0.31
RFFL-201ENST00000315249 COQ9O75208 318 aa13.14□□□□□ -0.31
RFFL-201ENST00000315249 AHSGP02765 367 aa13.14□□□□□ -0.31
RFFL-201ENST00000315249 CHRM1P11229 460 aaPredicted RBP13.14□□□□□ -0.31
RFFL-201ENST00000315249 CASP6P55212 293 aa13.14□□□□□ -0.31
RFFL-201ENST00000315249 LIPEQ05469 1076 aa13.14□□□□□ -0.31
RFFL-201ENST00000315249 SPIN4Q56A73 249 aa13.14□□□□□ -0.31
RFFL-201ENST00000315249 DEFB123Q8N688 67 aa13.14□□□□□ -0.31
RFFL-201ENST00000315249 OR2T3Q8NH03 318 aa13.14□□□□□ -0.31
RFFL-201ENST00000315249 ATOH1Q92858 354 aaPredicted RBP13.14□□□□□ -0.31
RFFL-201ENST00000315249 TCEAL4Q96EI5 215 aa13.14□□□□□ -0.31
RFFL-201ENST00000315249 GALPQ9UBC7 116 aa13.14□□□□□ -0.31
RFFL-201ENST00000315249 CLEC4AQ9UMR7 237 aa13.14□□□□□ -0.31
RFFL-201ENST00000315249 RPL26P61254 145 aaKnown RBP13.14□□□□□ -0.31
RFFL-201ENST00000315249 MAPK14Q16539 360 aa13.14□□□□□ -0.31
RFFL-201ENST00000315249 RBM20Q5T481 1227 aaKnown RBP13.14□□□□□ -0.31
RFFL-201ENST00000315249 ZNF433Q8N7K0 673 aaPredicted RBP13.14□□□□□ -0.31
RFFL-201ENST00000315249 EZH1Q92800 747 aaPredicted RBP13.14□□□□□ -0.31
RFFL-201ENST00000315249 C17orf62Q9BQA9 187 aa13.14□□□□□ -0.31
RFFL-201ENST00000315249 MAFFQ9ULX9 164 aa13.14□□□□□ -0.31
RFFL-201ENST00000315249 RPL26L1Q9UNX3 145 aaKnown RBP13.14□□□□□ -0.31
RFFL-201ENST00000315249 DYTNA2CJ06 578 aa13.14□□□□□ -0.31
RFFL-201ENST00000315249 VSTM5A8MXK1 200 aa13.14□□□□□ -0.31
RFFL-201ENST00000315249 MTPNP58546 118 aa13.14□□□□□ -0.31
RFFL-201ENST00000315249 MZT2AQ6P582 158 aa13.14□□□□□ -0.31
RFFL-201ENST00000315249 LRRC70Q7Z2Q7 622 aa13.14□□□□□ -0.31
RFFL-201ENST00000315249 OR6K6Q8NGW6 343 aa13.14□□□□□ -0.31
RFFL-201ENST00000315249 FANCFQ9NPI8 374 aa13.14□□□□□ -0.31
RFFL-201ENST00000315249 CMTM6Q9NX76 183 aa13.14□□□□□ -0.31
RFFL-201ENST00000315249 ADAMTS5Q9UNA0 930 aa13.14□□□□□ -0.31
RFFL-201ENST00000315249 IDH3BO43837 385 aa13.14□□□□□ -0.31
RFFL-201ENST00000315249 EDF1O60869 148 aaKnown RBP13.14□□□□□ -0.31
RFFL-201ENST00000315249 FBLP22087 321 aaKnown RBP13.14□□□□□ -0.31
RFFL-201ENST00000315249 RABIFP47224 123 aa13.14□□□□□ -0.31
RFFL-201ENST00000315249 GJA8P48165 433 aa13.14□□□□□ -0.31
RFFL-201ENST00000315249 CDH12P55289 794 aa13.14□□□□□ -0.31
RFFL-201ENST00000315249 KLHL17Q6TDP4 642 aa13.14□□□□□ -0.31
RFFL-201ENST00000315249 MRPL10Q7Z7H8 261 aaKnown RBP13.14□□□□□ -0.31
RFFL-201ENST00000315249 LRRTM3Q86VH5 581 aa13.14□□□□□ -0.31
RFFL-201ENST00000315249 GJD3Q8N144 294 aa13.14□□□□□ -0.31
RFFL-201ENST00000315249 TRPV3Q8NET8 790 aa13.14□□□□□ -0.31
RFFL-201ENST00000315249 KIFC1Q9BW19 673 aa13.14□□□□□ -0.31
RFFL-201ENST00000315249 CPEB1Q9BZB8 566 aaKnown RBP13.14□□□□□ -0.31
RFFL-201ENST00000315249 RBM47A0AV96 593 aaKnown RBP13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms