RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 ANAPC5Q9UJX4 755 aa14.1□□□□□ -0.15
CCDC88B-201ENST00000301897 TFR2Q9UP52 801 aa14.1□□□□□ -0.15
CCDC88B-201ENST00000301897 MAU2Q9Y6X3 613 aa14.1□□□□□ -0.15
CCDC88B-201ENST00000301897 HIVEP1P15822 2718 aa14.09□□□□□ -0.15
CCDC88B-201ENST00000301897 PRMT5O14744 637 aaPredicted RBP14.09□□□□□ -0.15
CCDC88B-201ENST00000301897 PRICKLE3O43900 615 aaPredicted RBP14.09□□□□□ -0.15
CCDC88B-201ENST00000301897 CTSVO60911 334 aa14.09□□□□□ -0.15
CCDC88B-201ENST00000301897 WFS1O76024 890 aa14.09□□□□□ -0.15
CCDC88B-201ENST00000301897 IPO7O95373 1038 aaKnown RBP14.09□□□□□ -0.15
CCDC88B-201ENST00000301897 ICAM2P13598 275 aa14.09□□□□□ -0.15
CCDC88B-201ENST00000301897 NAP1L1P55209 391 aaKnown RBP14.09□□□□□ -0.15
CCDC88B-201ENST00000301897 CASP6P55212 293 aa14.09□□□□□ -0.15
CCDC88B-201ENST00000301897 KCNK10P57789 538 aa14.09□□□□□ -0.15
CCDC88B-201ENST00000301897 PRAMEP78395 509 aa14.09□□□□□ -0.15
CCDC88B-201ENST00000301897 ACVR1Q04771 509 aa14.09□□□□□ -0.15
CCDC88B-201ENST00000301897 GRB7Q14451 532 aa14.09□□□□□ -0.15
CCDC88B-201ENST00000301897 TSTD2Q5T7W7 516 aa14.09□□□□□ -0.15
CCDC88B-201ENST00000301897 MICALCLQ6ZW33 695 aa14.09□□□□□ -0.15
CCDC88B-201ENST00000301897 VRK3Q8IV63 474 aa14.09□□□□□ -0.15
CCDC88B-201ENST00000301897 TC2NQ8N9U0 490 aa14.09□□□□□ -0.15
CCDC88B-201ENST00000301897 OR6P1Q8NGX9 317 aa14.09□□□□□ -0.15
CCDC88B-201ENST00000301897 MAGEC3Q8TD91 643 aa14.09□□□□□ -0.15
CCDC88B-201ENST00000301897 FOPNLQ96NB1 174 aa14.09□□□□□ -0.15
CCDC88B-201ENST00000301897 IL17FQ96PD4 163 aa14.09□□□□□ -0.15
CCDC88B-201ENST00000301897 PANX3Q96QZ0 392 aa14.09□□□□□ -0.15
CCDC88B-201ENST00000301897 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP14.09□□□□□ -0.15
CCDC88B-201ENST00000301897 PIH1D1Q9NWS0 290 aaKnown RBP14.09□□□□□ -0.15
CCDC88B-201ENST00000301897 PTGFRNQ9P2B2 879 aa14.09□□□□□ -0.15
CCDC88B-201ENST00000301897 ZC3H7BQ9UGR2 993 aaKnown RBP14.09□□□□□ -0.15
CCDC88B-201ENST00000301897 MTORP42345 2549 aa14.09□□□□□ -0.15
CCDC88B-201ENST00000301897 CSMD2Q7Z408 3487 aa14.08□□□□□ -0.16
CCDC88B-201ENST00000301897 BTNL10A8MVZ5 291 aa14.08□□□□□ -0.16
CCDC88B-201ENST00000301897 COX6A1P12074 109 aa14.08□□□□□ -0.16
CCDC88B-201ENST00000301897 COX6B1P14854 86 aa14.08□□□□□ -0.16
CCDC88B-201ENST00000301897 ADRA1DP25100 572 aa14.08□□□□□ -0.16
CCDC88B-201ENST00000301897 FDFT1P37268 417 aa14.08□□□□□ -0.16
CCDC88B-201ENST00000301897 TTPAP49638 278 aa14.08□□□□□ -0.16
CCDC88B-201ENST00000301897 EMP2P54851 167 aa14.08□□□□□ -0.16
CCDC88B-201ENST00000301897 DSG2Q14126 1118 aa14.08□□□□□ -0.16
CCDC88B-201ENST00000301897 PPP1R21Q6ZMI0 780 aa14.08□□□□□ -0.16
CCDC88B-201ENST00000301897 RNF44Q7L0R7 432 aa14.08□□□□□ -0.16
CCDC88B-201ENST00000301897 PRSS58Q8IYP2 241 aa14.08□□□□□ -0.16
CCDC88B-201ENST00000301897 UBL4BQ8N7F7 174 aa14.08□□□□□ -0.16
CCDC88B-201ENST00000301897 OR2L3Q8NG85 312 aa14.08□□□□□ -0.16
CCDC88B-201ENST00000301897 OR52K1Q8NGK4 314 aa14.08□□□□□ -0.16
CCDC88B-201ENST00000301897 BRIX1Q8TDN6 353 aaKnown RBP14.08□□□□□ -0.16
CCDC88B-201ENST00000301897 ALG3Q92685 438 aa14.08□□□□□ -0.16
CCDC88B-201ENST00000301897 C8orf44Q96CB5 159 aa14.08□□□□□ -0.16
CCDC88B-201ENST00000301897 TAAR6Q96RI8 345 aa14.08□□□□□ -0.16
CCDC88B-201ENST00000301897 MIPEPQ99797 713 aa14.08□□□□□ -0.16
CCDC88B-201ENST00000301897 ZFYVE21Q9BQ24 234 aa14.08□□□□□ -0.16
CCDC88B-201ENST00000301897 TEKT2Q9UIF3 430 aa14.08□□□□□ -0.16
CCDC88B-201ENST00000301897 TRGV8A0A0C4DH27 118 aa14.07□□□□□ -0.16
CCDC88B-201ENST00000301897 A0A0J9YVX5 310 aa14.07□□□□□ -0.16
CCDC88B-201ENST00000301897 IDSB3KWA1 339 aa14.07□□□□□ -0.16
CCDC88B-201ENST00000301897 CCL21O00585 134 aa14.07□□□□□ -0.16
CCDC88B-201ENST00000301897 VPS26AO75436 327 aa14.07□□□□□ -0.16
CCDC88B-201ENST00000301897 SUN1O94901 812 aa14.07□□□□□ -0.16
CCDC88B-201ENST00000301897 RASAL1O95294 804 aa14.07□□□□□ -0.16
CCDC88B-201ENST00000301897 EIF2S1P05198 315 aaKnown RBP14.07□□□□□ -0.16
CCDC88B-201ENST00000301897 HTR1EP28566 365 aa14.07□□□□□ -0.16
CCDC88B-201ENST00000301897 GRNP28799 593 aaKnown RBP14.07□□□□□ -0.16
CCDC88B-201ENST00000301897 CMPK1P30085 196 aa14.07□□□□□ -0.16
CCDC88B-201ENST00000301897 STIP1P31948 543 aaKnown RBP14.07□□□□□ -0.16
CCDC88B-201ENST00000301897 CA7P43166 264 aa14.07□□□□□ -0.16
CCDC88B-201ENST00000301897 LONRF1Q17RB8 773 aa14.07□□□□□ -0.16
CCDC88B-201ENST00000301897 ZNF630Q2M218 657 aaPredicted RBP14.07□□□□□ -0.16
CCDC88B-201ENST00000301897 VWA2Q5GFL6 755 aa14.07□□□□□ -0.16
CCDC88B-201ENST00000301897 PTRHD1Q6GMV3 140 aaKnown RBP14.07□□□□□ -0.16
CCDC88B-201ENST00000301897 FRMPD2BQ6IN97 320 aa14.07□□□□□ -0.16
CCDC88B-201ENST00000301897 XKRXQ6PP77 449 aa14.07□□□□□ -0.16
CCDC88B-201ENST00000301897 MRGPRGQ86SM5 289 aa14.07□□□□□ -0.16
CCDC88B-201ENST00000301897 LRRC6Q86X45 466 aa14.07□□□□□ -0.16
CCDC88B-201ENST00000301897 SKA2Q8WVK7 121 aaPredicted RBP14.07□□□□□ -0.16
CCDC88B-201ENST00000301897 PSMF1Q92530 271 aa14.07□□□□□ -0.16
CCDC88B-201ENST00000301897 CCDC120Q96HB5 630 aa14.07□□□□□ -0.16
CCDC88B-201ENST00000301897 CABS1Q96KC9 395 aa14.07□□□□□ -0.16
CCDC88B-201ENST00000301897 TMEM121Q9BTD3 319 aa14.07□□□□□ -0.16
CCDC88B-201ENST00000301897 TGIF2Q9GZN2 237 aa14.07□□□□□ -0.16
CCDC88B-201ENST00000301897 MKKSQ9NPJ1 570 aaPredicted RBP14.07□□□□□ -0.16
CCDC88B-201ENST00000301897 UTP6Q9NYH9 597 aaKnown RBP14.07□□□□□ -0.16
CCDC88B-201ENST00000301897 PLA2G3Q9NZ20 509 aa14.07□□□□□ -0.16
CCDC88B-201ENST00000301897 SPATA7Q9P0W8 599 aa14.07□□□□□ -0.16
CCDC88B-201ENST00000301897 TRPC4Q9UBN4 977 aa14.07□□□□□ -0.16
CCDC88B-201ENST00000301897 SEC14L3Q9UDX4 400 aa14.07□□□□□ -0.16
CCDC88B-201ENST00000301897 CIDEBQ9UHD4 219 aa14.07□□□□□ -0.16
CCDC88B-201ENST00000301897 GNPTGQ9UJJ9 305 aa14.07□□□□□ -0.16
CCDC88B-201ENST00000301897 TTC7AQ9ULT0 858 aaPredicted RBP14.07□□□□□ -0.16
CCDC88B-201ENST00000301897 CPAMD8Q8IZJ3 1885 aa14.07□□□□□ -0.16
CCDC88B-201ENST00000301897 HEATR5BQ9P2D3 2071 aa14.06□□□□□ -0.16
CCDC88B-201ENST00000301897 IGHV1-45A0A0A0MS14 117 aa14.06□□□□□ -0.16
CCDC88B-201ENST00000301897 OR2A25A4D2G3 310 aa14.06□□□□□ -0.16
CCDC88B-201ENST00000301897 MIF4GDA9UHW6 222 aaKnown RBP14.06□□□□□ -0.16
CCDC88B-201ENST00000301897 UNC5CO95185 931 aa14.06□□□□□ -0.16
CCDC88B-201ENST00000301897 C1orf105O95561 183 aa14.06□□□□□ -0.16
CCDC88B-201ENST00000301897 HEXBP07686 556 aa14.06□□□□□ -0.16
CCDC88B-201ENST00000301897 ANXA5P08758 320 aa14.06□□□□□ -0.16
CCDC88B-201ENST00000301897 AGAP20933 346 aa14.06□□□□□ -0.16
CCDC88B-201ENST00000301897 PRTGQ2VWP7 1150 aa14.06□□□□□ -0.16
CCDC88B-201ENST00000301897 ABHD17BQ5VST6 288 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms