RNA–Protein interactions for RNA: ENST00000269318.9

CCDC40-201, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2 BASIC

Gene CCDC40, Length 1,970 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-201ENST00000269318 PPT2Q9UMR5 302 aa16.09■□□□□ 0.17
CCDC40-201ENST00000269318 USP22Q9UPT9 525 aa16.09■□□□□ 0.17
CCDC40-201ENST00000269318 SH2B3Q9UQQ2 575 aa16.09■□□□□ 0.17
CCDC40-201ENST00000269318 OR1A2Q9Y585 309 aa16.09■□□□□ 0.17
CCDC40-201ENST00000269318 PCDHGA11Q9Y5H2 935 aa16.09■□□□□ 0.17
CCDC40-201ENST00000269318 DNMT3AQ9Y6K1 912 aaPredicted RBP16.09■□□□□ 0.17
CCDC40-201ENST00000269318 PLRG1O43660 514 aaKnown RBP16.08■□□□□ 0.16
CCDC40-201ENST00000269318 DFNA5O60443 496 aa16.08■□□□□ 0.16
CCDC40-201ENST00000269318 PAK4O96013 591 aaPredicted RBP16.08■□□□□ 0.16
CCDC40-201ENST00000269318 EGFP01133 1207 aa16.08■□□□□ 0.16
CCDC40-201ENST00000269318 PNLIPRP1P54315 467 aa16.08■□□□□ 0.16
CCDC40-201ENST00000269318 MTPNP58546 118 aa16.08■□□□□ 0.16
CCDC40-201ENST00000269318 PLIN5Q00G26 463 aa16.08■□□□□ 0.16
CCDC40-201ENST00000269318 COL19A1Q14993 1142 aa16.08■□□□□ 0.16
CCDC40-201ENST00000269318 TMEM259Q4ZIN3 620 aa16.08■□□□□ 0.16
CCDC40-201ENST00000269318 METRNLQ641Q3 311 aa16.08■□□□□ 0.16
CCDC40-201ENST00000269318 LMNTD1Q8N9Z9 388 aa16.08■□□□□ 0.16
CCDC40-201ENST00000269318 LRTOMTQ8WZ04 291 aa16.08■□□□□ 0.16
CCDC40-201ENST00000269318 METTL2AQ96IZ6 378 aaKnown RBP16.08■□□□□ 0.16
CCDC40-201ENST00000269318 OR52E6Q96RD3 313 aa16.08■□□□□ 0.16
CCDC40-201ENST00000269318 SLC6A17Q9H1V8 727 aa16.08■□□□□ 0.16
CCDC40-201ENST00000269318 ZNF576Q9H609 170 aa16.08■□□□□ 0.16
CCDC40-201ENST00000269318 WDR26Q9H7D7 661 aa16.08■□□□□ 0.16
CCDC40-201ENST00000269318 SLC25A37Q9NYZ2 338 aa16.08■□□□□ 0.16
CCDC40-201ENST00000269318 COL4A2P08572 1712 aa16.08■□□□□ 0.16
CCDC40-201ENST00000269318 TRBV5-3A0A0A0MS03 114 aa16.07■□□□□ 0.16
CCDC40-201ENST00000269318 TCRBV5S2A0A599 114 aa16.07■□□□□ 0.16
CCDC40-201ENST00000269318 GPR89AB7ZAQ6 455 aa16.07■□□□□ 0.16
CCDC40-201ENST00000269318 ETHE1O95571 254 aa16.07■□□□□ 0.16
CCDC40-201ENST00000269318 GPR89BP0CG08 455 aa16.07■□□□□ 0.16
CCDC40-201ENST00000269318 COL9A1P20849 921 aa16.07■□□□□ 0.16
CCDC40-201ENST00000269318 BMP8BP34820 402 aa16.07■□□□□ 0.16
CCDC40-201ENST00000269318 RPS21P63220 83 aaKnown RBP16.07■□□□□ 0.16
CCDC40-201ENST00000269318 BLMHQ13867 455 aa16.07■□□□□ 0.16
CCDC40-201ENST00000269318 STARD3Q14849 445 aa16.07■□□□□ 0.16
CCDC40-201ENST00000269318 CATSPEREQ5SY80 951 aa16.07■□□□□ 0.16
CCDC40-201ENST00000269318 COL13A1Q5TAT6 717 aaPredicted RBP16.07■□□□□ 0.16
CCDC40-201ENST00000269318 TMPRSS11BQ86T26 416 aa16.07■□□□□ 0.16
CCDC40-201ENST00000269318 CATSPER1Q8NEC5 780 aa16.07■□□□□ 0.16
CCDC40-201ENST00000269318 OR5AR1Q8NGP9 310 aa16.07■□□□□ 0.16
CCDC40-201ENST00000269318 FAM110BQ8TC76 370 aa16.07■□□□□ 0.16
CCDC40-201ENST00000269318 EGLN2Q96KS0 407 aa16.07■□□□□ 0.16
CCDC40-201ENST00000269318 NECTIN4Q96NY8 510 aa16.07■□□□□ 0.16
CCDC40-201ENST00000269318 EHD1Q9H4M9 534 aa16.07■□□□□ 0.16
CCDC40-201ENST00000269318 SERHLQ9NQF3 203 aa16.07■□□□□ 0.16
CCDC40-201ENST00000269318 ASF1AQ9Y294 204 aa16.07■□□□□ 0.16
CCDC40-201ENST00000269318 MAN2B2Q9Y2E5 1009 aa16.07■□□□□ 0.16
CCDC40-201ENST00000269318 PCDHB3Q9Y5E6 796 aa16.07■□□□□ 0.16
CCDC40-201ENST00000269318 DHRS12A0PJE2 317 aa16.07■□□□□ 0.16
CCDC40-201ENST00000269318 MAGEB17A8MXT2 336 aa16.07■□□□□ 0.16
CCDC40-201ENST00000269318 MTHFD1P11586 935 aaKnown RBP16.07■□□□□ 0.16
CCDC40-201ENST00000269318 HRH2P25021 359 aa16.07■□□□□ 0.16
CCDC40-201ENST00000269318 OR4D2P58180 307 aa16.07■□□□□ 0.16
CCDC40-201ENST00000269318 KLC1Q07866 573 aa16.07■□□□□ 0.16
CCDC40-201ENST00000269318 DDX39BQ13838 428 aaKnown RBP16.07■□□□□ 0.16
CCDC40-201ENST00000269318 ATG9BQ674R7 924 aa16.07■□□□□ 0.16
CCDC40-201ENST00000269318 KIAA1161Q6NSJ0 714 aa16.07■□□□□ 0.16
CCDC40-201ENST00000269318 HMBOX1Q6NT76 420 aa16.07■□□□□ 0.16
CCDC40-201ENST00000269318 RALGPS2Q86X27 583 aaPredicted RBP16.07■□□□□ 0.16
CCDC40-201ENST00000269318 DCUN1D3Q8IWE4 304 aa16.07■□□□□ 0.16
CCDC40-201ENST00000269318 ADGRG5Q8IZF4 528 aa16.07■□□□□ 0.16
CCDC40-201ENST00000269318 PHC3Q8NDX5 983 aa16.07■□□□□ 0.16
CCDC40-201ENST00000269318 HUS1BQ8NHY5 278 aa16.07■□□□□ 0.16
CCDC40-201ENST00000269318 KLK6Q92876 244 aa16.07■□□□□ 0.16
CCDC40-201ENST00000269318 ABHD8Q96I13 439 aa16.07■□□□□ 0.16
CCDC40-201ENST00000269318 BTBD9Q96Q07 612 aa16.07■□□□□ 0.16
CCDC40-201ENST00000269318 EFHD1Q9BUP0 239 aa16.07■□□□□ 0.16
CCDC40-201ENST00000269318 FBRSQ9HAH7 460 aa16.07■□□□□ 0.16
CCDC40-201ENST00000269318 KMOO15229 486 aa16.06■□□□□ 0.16
CCDC40-201ENST00000269318 FUCA1P04066 466 aa16.06■□□□□ 0.16
CCDC40-201ENST00000269318 ERGP11308 486 aa16.06■□□□□ 0.16
CCDC40-201ENST00000269318 UQCRBP14927 111 aa16.06■□□□□ 0.16
CCDC40-201ENST00000269318 NCK1P16333 377 aa16.06■□□□□ 0.16
CCDC40-201ENST00000269318 HOXB9P17482 250 aaPredicted RBP16.06■□□□□ 0.16
CCDC40-201ENST00000269318 S100A3P33764 101 aa16.06■□□□□ 0.16
CCDC40-201ENST00000269318 ADPRHP54922 357 aa16.06■□□□□ 0.16
CCDC40-201ENST00000269318 LRIF1Q5T3J3 769 aa16.06■□□□□ 0.16
CCDC40-201ENST00000269318 SDE2Q6IQ49 451 aa16.06■□□□□ 0.16
CCDC40-201ENST00000269318 MED27Q6P2C8 311 aa16.06■□□□□ 0.16
CCDC40-201ENST00000269318 OR14C36Q8NHC7 312 aa16.06■□□□□ 0.16
CCDC40-201ENST00000269318 DNAJB8Q8NHS0 232 aa16.06■□□□□ 0.16
CCDC40-201ENST00000269318 TFGQ92734 400 aaPredicted RBP16.06■□□□□ 0.16
CCDC40-201ENST00000269318 RAD51AP1Q96B01 352 aa16.06■□□□□ 0.16
CCDC40-201ENST00000269318 ZNF583Q96ND8 569 aa16.06■□□□□ 0.16
CCDC40-201ENST00000269318 EBPLQ9BY08 206 aa16.06■□□□□ 0.16
CCDC40-201ENST00000269318 PAIP1Q9H074 479 aaKnown RBP16.06■□□□□ 0.16
CCDC40-201ENST00000269318 KCNH6Q9H252 994 aa16.06■□□□□ 0.16
CCDC40-201ENST00000269318 IKZF5Q9H5V7 419 aa16.06■□□□□ 0.16
CCDC40-201ENST00000269318 CCDC177Q9NQR7 707 aaPredicted RBP16.06■□□□□ 0.16
CCDC40-201ENST00000269318 BATF3Q9NR55 127 aa16.06■□□□□ 0.16
CCDC40-201ENST00000269318 RUVBL1Q9Y265 456 aaKnown RBP16.06■□□□□ 0.16
CCDC40-201ENST00000269318 DYRK1BQ9Y463 629 aa16.06■□□□□ 0.16
CCDC40-201ENST00000269318 A0A1W2PQU0 124 aa16.06■□□□□ 0.16
CCDC40-201ENST00000269318 DNTTP04053 509 aa16.06■□□□□ 0.16
CCDC40-201ENST00000269318 C1GALT1C1LP0DN25 315 aa16.06■□□□□ 0.16
CCDC40-201ENST00000269318 MYCLP1P12525 358 aaPredicted RBP16.06■□□□□ 0.16
CCDC40-201ENST00000269318 HOXB2P14652 356 aa16.06■□□□□ 0.16
CCDC40-201ENST00000269318 KELP23276 732 aa16.06■□□□□ 0.16
CCDC40-201ENST00000269318 OXTRP30559 389 aa16.06■□□□□ 0.16
CCDC40-201ENST00000269318 C21orf58P58505 322 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms