RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 ARRDC2Q8TBH0 407 aa13.98□□□□□ -0.17
SDC1-201ENST00000254351 TMEM203Q969S6 136 aa13.98□□□□□ -0.17
SDC1-201ENST00000254351 SLC30A2Q9BRI3 323 aa13.98□□□□□ -0.17
SDC1-201ENST00000254351 REEP1Q9H902 201 aa13.98□□□□□ -0.17
SDC1-201ENST00000254351 ABCB8Q9NUT2 735 aa13.98□□□□□ -0.17
SDC1-201ENST00000254351 TMEM184CQ9NVA4 438 aa13.98□□□□□ -0.17
SDC1-201ENST00000254351 RLIMQ9NVW2 624 aa13.98□□□□□ -0.17
SDC1-201ENST00000254351 RBPJLQ9UBG7 517 aa13.98□□□□□ -0.17
SDC1-201ENST00000254351 DLGAP4Q9Y2H0 992 aa13.98□□□□□ -0.17
SDC1-201ENST00000254351 DERAQ9Y315 318 aa13.98□□□□□ -0.17
SDC1-201ENST00000254351 RLFQ13129 1914 aa13.98□□□□□ -0.17
SDC1-201ENST00000254351 TRAV19A0A0A6YYK7 116 aa13.98□□□□□ -0.17
SDC1-201ENST00000254351 EFCAB10A6NFE3 127 aa13.98□□□□□ -0.17
SDC1-201ENST00000254351 CLDN24A6NM45 220 aa13.98□□□□□ -0.17
SDC1-201ENST00000254351 VPS26AO75436 327 aa13.98□□□□□ -0.17
SDC1-201ENST00000254351 CTSHP09668 335 aa13.98□□□□□ -0.17
SDC1-201ENST00000254351 UQCRC1P31930 480 aa13.98□□□□□ -0.17
SDC1-201ENST00000254351 SOX3P41225 446 aa13.98□□□□□ -0.17
SDC1-201ENST00000254351 GPR15P49685 360 aa13.98□□□□□ -0.17
SDC1-201ENST00000254351 OR4F3Q6IEY1 312 aa13.98□□□□□ -0.17
SDC1-201ENST00000254351 CAPN13Q6MZZ7 669 aaPredicted RBP13.98□□□□□ -0.17
SDC1-201ENST00000254351 GPR149Q86SP6 731 aa13.98□□□□□ -0.17
SDC1-201ENST00000254351 C11orf74Q86VG3 221 aa13.98□□□□□ -0.17
SDC1-201ENST00000254351 RGL4Q8IZJ4 473 aa13.98□□□□□ -0.17
SDC1-201ENST00000254351 LPCAT1Q8NF37 534 aa13.98□□□□□ -0.17
SDC1-201ENST00000254351 PIK3R3Q92569 461 aa13.98□□□□□ -0.17
SDC1-201ENST00000254351 GGHQ92820 318 aa13.98□□□□□ -0.17
SDC1-201ENST00000254351 IGSF8Q969P0 613 aa13.98□□□□□ -0.17
SDC1-201ENST00000254351 HSH2DQ96JZ2 352 aa13.98□□□□□ -0.17
SDC1-201ENST00000254351 A0A0D9SEW6 157 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 A0A1W2PQ09 198 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 GPR32O75388 356 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 NUDT7P0C024 238 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 BMP1P13497 986 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 JUNDP17535 347 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 OR1E1P30953 314 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 SOX6P35712 828 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 CCL23P55773 120 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 FXNQ16595 210 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 RFX4Q33E94 735 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 TIGD5Q53EQ6 642 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 SPPL2AQ8TCT8 520 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 COQ8BQ96D53 544 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 CCM2Q9BSQ5 444 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 NUSAP1Q9BXS6 441 aaKnown RBP13.97□□□□□ -0.17
SDC1-201ENST00000254351 MROH8Q9H579 483 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 OSER1Q9NX31 292 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 LYVE1Q9Y5Y7 322 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 FABP3P05413 133 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 DARSP14868 501 aaKnown RBP13.97□□□□□ -0.17
SDC1-201ENST00000254351 SDHBP21912 280 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 MC4RP32245 332 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 SEMG2Q02383 582 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 DOC2BQ14184 412 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 STARD3Q14849 445 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 SPATS1Q496A3 300 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 LRRC66Q68CR7 880 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 KDM4DQ6B0I6 523 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 PEX5LQ8IYB4 626 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 SKA2Q8WVK7 121 aaPredicted RBP13.97□□□□□ -0.17
SDC1-201ENST00000254351 MYEOVQ96EZ4 313 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 PGAP3Q96FM1 320 aaPredicted RBP13.97□□□□□ -0.17
SDC1-201ENST00000254351 OR2A14Q96R47 310 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 ABI2Q9NYB9 513 aaPredicted RBP13.97□□□□□ -0.17
SDC1-201ENST00000254351 FAM8A1Q9UBU6 413 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 RAPGEFL1Q9UHV5 662 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 PCDHGA6Q9Y5G7 932 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 ULK1O75385 1050 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 WDR47O94967 919 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 SERPINF2P08697 491 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 ADORA3P0DMS8 318 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 ITGAMP11215 1152 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 S100A3P33764 101 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 RFX2P48378 723 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 KRT6CP48668 564 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 RGS6P49758 472 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 UGT2B15P54855 530 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 TUBA1BP68363 451 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 NFE2L1Q14494 772 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 TYSND1Q2T9J0 566 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 GNASQ5JWF2 1037 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 TUBA1AQ71U36 451 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 HCAR2Q8TDS4 363 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 GTPBP3Q969Y2 492 aaKnown RBP13.97□□□□□ -0.17
SDC1-201ENST00000254351 FEVQ99581 238 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 AASDHPPTQ9NRN7 309 aa13.97□□□□□ -0.17
SDC1-201ENST00000254351 NDRG4Q9ULP0 352 aaKnown RBP13.97□□□□□ -0.17
SDC1-201ENST00000254351 GOLGA4Q13439 2230 aaKnown RBP13.96□□□□□ -0.17
SDC1-201ENST00000254351 PDHXO00330 501 aa13.96□□□□□ -0.17
SDC1-201ENST00000254351 RFXANKO14593 260 aa13.96□□□□□ -0.17
SDC1-201ENST00000254351 FGF10O15520 208 aaPredicted RBP13.96□□□□□ -0.17
SDC1-201ENST00000254351 CNMDO75829 334 aa13.96□□□□□ -0.17
SDC1-201ENST00000254351 CCNYL3P0C7X3 344 aa13.96□□□□□ -0.17
SDC1-201ENST00000254351 CYP2A7P20853 494 aa13.96□□□□□ -0.17
SDC1-201ENST00000254351 RRM2P31350 389 aa13.96□□□□□ -0.17
SDC1-201ENST00000254351 RAB41Q5JT25 222 aa13.96□□□□□ -0.17
SDC1-201ENST00000254351 KLHL17Q6TDP4 642 aa13.96□□□□□ -0.17
SDC1-201ENST00000254351 SNX20Q7Z614 316 aa13.96□□□□□ -0.17
SDC1-201ENST00000254351 NOXA1Q86UR1 476 aa13.96□□□□□ -0.17
SDC1-201ENST00000254351 TSPYL5Q86VY4 417 aaPredicted RBP13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms