RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 RPL5P46777 297 aaKnown RBP3.5□□□□□ -1.85
SCN1A-221ENST00000641996 CSNK1DP48730 415 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 CDK16Q00536 496 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 NME3Q13232 169 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 OTUD1Q5VV17 481 aaPredicted RBP3.5□□□□□ -1.85
SCN1A-221ENST00000641996 DCDC5Q6ZRR9 648 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 BATF2Q8N1L9 274 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 TMEM35BQ8NCS4 154 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 APBB2Q92870 758 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 CSPG4P5Q96PW8 444 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 GPA33Q99795 319 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 KRCC1Q9NPI7 259 aaPredicted RBP3.5□□□□□ -1.85
SCN1A-221ENST00000641996 DUSP22Q9NRW4 184 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 KIF20BQ96Q89 1820 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 GPR182O15218 404 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 GPR39O43194 453 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 TSPAN3O60637 253 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 RPLP2P05387 115 aaKnown RBP3.5□□□□□ -1.85
SCN1A-221ENST00000641996 YBX3P16989 372 aaKnown RBP eCLIP3.5□□□□□ -1.85
SCN1A-221ENST00000641996 HTR1BP28222 390 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 HTR3AP46098 478 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 TAS2R60P59551 318 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 MAGOHP61326 146 aaKnown RBP3.5□□□□□ -1.85
SCN1A-221ENST00000641996 VEZF1Q14119 521 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 FGD2Q7Z6J4 655 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 CPXM2Q8N436 756 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 STYXQ8WUJ0 223 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 MAGOHBQ96A72 148 aaKnown RBP3.5□□□□□ -1.85
SCN1A-221ENST00000641996 NXPE2Q96DL1 559 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 PABPC5Q96DU9 382 aaKnown RBP3.5□□□□□ -1.85
SCN1A-221ENST00000641996 MMABQ96EY8 250 aaPredicted RBP3.5□□□□□ -1.85
SCN1A-221ENST00000641996 ATP13A2Q9NQ11 1180 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 IL17BQ9UHF5 180 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 MRTO4Q9UKD2 239 aaKnown RBP3.5□□□□□ -1.85
SCN1A-221ENST00000641996 CA14Q9ULX7 337 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 ZNF233A6NK53 670 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 CLCA1A8K7I4 914 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 NARSO43776 548 aaKnown RBP3.49□□□□□ -1.85
SCN1A-221ENST00000641996 NUDT21O43809 227 aaKnown RBP3.49□□□□□ -1.85
SCN1A-221ENST00000641996 ZNF23P17027 643 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 C1orf53Q5VUE5 145 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 LMNTD1Q8N9Z9 388 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 FBXL18Q96ME1 805 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 SERPINB11Q96P15 392 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 ACBD6Q9BR61 282 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 LANCL2Q9NS86 450 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 UTP11Q9Y3A2 253 aaKnown RBP3.49□□□□□ -1.85
SCN1A-221ENST00000641996 TRAF6Q9Y4K3 522 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 PCDHA9Q9Y5H5 950 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 SLC22A31A6NKX4 558 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 EGFP01133 1207 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 AP1S2P56377 157 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 NHLH1Q02575 133 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 EXT1Q16394 746 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 RNF43Q68DV7 783 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 RAB44Q7Z6P3 723 aaPredicted RBP3.49□□□□□ -1.85
SCN1A-221ENST00000641996 SLC22A16Q86VW1 577 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 GAB3Q8WWW8 586 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 LPGAT1Q92604 370 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 SEC31BQ9NQW1 1179 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 KLHL8Q9P2G9 620 aaPredicted RBP3.49□□□□□ -1.85
SCN1A-221ENST00000641996 USP47Q96K76 1375 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 WFS1O76024 890 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 ALX3O95076 343 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 MT-CO2P00403 227 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 PBX3P40426 434 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 MAGEA12P43365 314 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 QARSP47897 775 aaKnown RBP3.49□□□□□ -1.85
SCN1A-221ENST00000641996 SNRPD2P62316 118 aaKnown RBP3.49□□□□□ -1.85
SCN1A-221ENST00000641996 FOXB2Q5VYV0 432 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 OR5M10Q6IEU7 315 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 FAM151BQ6UXP7 276 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 MAPK15Q8TD08 544 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 NTAN1Q96AB6 310 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 SOX17Q9H6I2 414 aaPredicted RBP3.49□□□□□ -1.85
SCN1A-221ENST00000641996 MLXIPQ9HAP2 919 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 NSD2O96028 1365 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 C20orf202A1L168 122 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 HS3ST1O14792 307 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 ADAMTS3O15072 1205 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 KCNQ2O43526 872 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 VEGFDO43915 354 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 PAPSS2O95340 614 aaPredicted RBP3.49□□□□□ -1.85
SCN1A-221ENST00000641996 METTL18O95568 372 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 CTPS1P17812 591 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 C4BPBP20851 252 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 ACTR1BP42025 376 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 CDH6P55285 790 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 GNA12Q03113 381 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 TOB2Q14106 344 aaPredicted RBP3.49□□□□□ -1.85
SCN1A-221ENST00000641996 TFDP2Q14188 446 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 ADIPOQQ15848 244 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 PAOXQ6QHF9 649 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 YTHDF3Q7Z739 585 aaKnown RBP3.49□□□□□ -1.85
SCN1A-221ENST00000641996 DCP2Q8IU60 420 aaKnown RBP3.49□□□□□ -1.85
SCN1A-221ENST00000641996 C12orf45Q8N5I9 185 aaPredicted RBP3.49□□□□□ -1.85
SCN1A-221ENST00000641996 ACTRT2Q8TDY3 377 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 NUDT11Q96G61 164 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 PWWP2AQ96N64 755 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 FAM193BQ96PV7 902 aaPredicted RBP3.49□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms