RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 ART3Q13508 389 aa14.34□□□□□ -0.11
SYNE2-228ENST00000639659 FAM214AQ32MH5 1076 aa14.34□□□□□ -0.11
SYNE2-228ENST00000639659 YOD1Q5VVQ6 348 aaPredicted RBP14.34□□□□□ -0.11
SYNE2-228ENST00000639659 TMEM207Q6UWW9 146 aa14.34□□□□□ -0.11
SYNE2-228ENST00000639659 VSTM4Q8IW00 320 aa14.34□□□□□ -0.11
SYNE2-228ENST00000639659 FAM71DQ8N9W8 422 aa14.34□□□□□ -0.11
SYNE2-228ENST00000639659 LMF1Q96S06 567 aa14.34□□□□□ -0.11
SYNE2-228ENST00000639659 TTC1Q99614 292 aa14.34□□□□□ -0.11
SYNE2-228ENST00000639659 MIPEPQ99797 713 aa14.34□□□□□ -0.11
SYNE2-228ENST00000639659 C19orf43Q9BQ61 176 aa14.34□□□□□ -0.11
SYNE2-228ENST00000639659 LUC7LQ9NQ29 371 aaKnown RBP14.34□□□□□ -0.11
SYNE2-228ENST00000639659 ZNF282Q9UDV7 671 aaPredicted RBP14.34□□□□□ -0.11
SYNE2-228ENST00000639659 C2CD3Q4AC94 2353 aa14.34□□□□□ -0.11
SYNE2-228ENST00000639659 TRAV17A0A0B4J275 112 aa14.33□□□□□ -0.12
SYNE2-228ENST00000639659 KRT87PA6NCN2 255 aa14.33□□□□□ -0.12
SYNE2-228ENST00000639659 F8W8V4 182 aa14.33□□□□□ -0.12
SYNE2-228ENST00000639659 NRP2O60462 931 aa14.33□□□□□ -0.12
SYNE2-228ENST00000639659 CTSVO60911 334 aa14.33□□□□□ -0.12
SYNE2-228ENST00000639659 WFS1O76024 890 aa14.33□□□□□ -0.12
SYNE2-228ENST00000639659 MED26O95402 600 aa14.33□□□□□ -0.12
SYNE2-228ENST00000639659 METTL18O95568 372 aa14.33□□□□□ -0.12
SYNE2-228ENST00000639659 GOT2P00505 430 aaKnown RBP14.33□□□□□ -0.12
SYNE2-228ENST00000639659 CELA2AP08217 269 aa14.33□□□□□ -0.12
SYNE2-228ENST00000639659 ZGLP1P0C6A0 271 aa14.33□□□□□ -0.12
SYNE2-228ENST00000639659 CCR7P32248 378 aa14.33□□□□□ -0.12
SYNE2-228ENST00000639659 CETN2P41208 172 aa14.33□□□□□ -0.12
SYNE2-228ENST00000639659 BDKRB1P46663 353 aa14.33□□□□□ -0.12
SYNE2-228ENST00000639659 HADHBP55084 474 aaKnown RBP14.33□□□□□ -0.12
SYNE2-228ENST00000639659 PARP6Q2NL67 630 aa14.33□□□□□ -0.12
SYNE2-228ENST00000639659 VWA2Q5GFL6 755 aa14.33□□□□□ -0.12
SYNE2-228ENST00000639659 FRMPD2BQ6IN97 320 aa14.33□□□□□ -0.12
SYNE2-228ENST00000639659 RPUSD3Q6P087 351 aaKnown RBP14.33□□□□□ -0.12
SYNE2-228ENST00000639659 CNGA4Q8IV77 575 aa14.33□□□□□ -0.12
SYNE2-228ENST00000639659 SLC22A15Q8IZD6 547 aa14.33□□□□□ -0.12
SYNE2-228ENST00000639659 KRT222Q8N1A0 295 aa14.33□□□□□ -0.12
SYNE2-228ENST00000639659 DNAAF3Q8N9W5 541 aa14.33□□□□□ -0.12
SYNE2-228ENST00000639659 OR6P1Q8NGX9 317 aa14.33□□□□□ -0.12
SYNE2-228ENST00000639659 OR2L8Q8NGY9 312 aa14.33□□□□□ -0.12
SYNE2-228ENST00000639659 GSDMBQ8TAX9 411 aa14.33□□□□□ -0.12
SYNE2-228ENST00000639659 HDAC10Q969S8 669 aa14.33□□□□□ -0.12
SYNE2-228ENST00000639659 RELTQ969Z4 430 aa14.33□□□□□ -0.12
SYNE2-228ENST00000639659 LURAP1Q96LR2 239 aa14.33□□□□□ -0.12
SYNE2-228ENST00000639659 TSSK1BQ9BXA7 367 aa14.33□□□□□ -0.12
SYNE2-228ENST00000639659 SEC14L3Q9UDX4 400 aa14.33□□□□□ -0.12
SYNE2-228ENST00000639659 POLQO75417 2590 aa14.32□□□□□ -0.12
SYNE2-228ENST00000639659 F8P00451 2351 aa14.32□□□□□ -0.12
SYNE2-228ENST00000639659 VSTM2BA6NLU5 285 aa14.32□□□□□ -0.12
SYNE2-228ENST00000639659 AKR1B15C9JRZ8 316 aaPredicted RBP14.32□□□□□ -0.12
SYNE2-228ENST00000639659 RASGRF2O14827 1237 aa14.32□□□□□ -0.12
SYNE2-228ENST00000639659 TJP3O95049 919 aa14.32□□□□□ -0.12
SYNE2-228ENST00000639659 APOA4P06727 396 aa14.32□□□□□ -0.12
SYNE2-228ENST00000639659 PRR35P0CG20 571 aa14.32□□□□□ -0.12
SYNE2-228ENST00000639659 COX6A1P12074 109 aa14.32□□□□□ -0.12
SYNE2-228ENST00000639659 CXCR2P25025 360 aa14.32□□□□□ -0.12
SYNE2-228ENST00000639659 CTNNA1P35221 906 aaKnown RBP14.32□□□□□ -0.12
SYNE2-228ENST00000639659 TNFSF10P50591 281 aa14.32□□□□□ -0.12
SYNE2-228ENST00000639659 TSTA3Q13630 321 aaPredicted RBP14.32□□□□□ -0.12
SYNE2-228ENST00000639659 TMED2Q15363 201 aa14.32□□□□□ -0.12
SYNE2-228ENST00000639659 KCTD11Q693B1 232 aa14.32□□□□□ -0.12
SYNE2-228ENST00000639659 TTC23LQ6PF05 361 aa14.32□□□□□ -0.12
SYNE2-228ENST00000639659 AFTPHQ6ULP2 937 aa14.32□□□□□ -0.12
SYNE2-228ENST00000639659 BNC2Q6ZN30 1099 aaPredicted RBP14.32□□□□□ -0.12
SYNE2-228ENST00000639659 OR52K1Q8NGK4 314 aa14.32□□□□□ -0.12
SYNE2-228ENST00000639659 SUN3Q8TAQ9 357 aa14.32□□□□□ -0.12
SYNE2-228ENST00000639659 CABS1Q96KC9 395 aa14.32□□□□□ -0.12
SYNE2-228ENST00000639659 IL1RAPL1Q9NZN1 696 aa14.32□□□□□ -0.12
SYNE2-228ENST00000639659 TRPC4Q9UBN4 977 aa14.32□□□□□ -0.12
SYNE2-228ENST00000639659 SLC2A6Q9UGQ3 507 aa14.32□□□□□ -0.12
SYNE2-228ENST00000639659 RUVBL2Q9Y230 463 aaKnown RBP14.32□□□□□ -0.12
SYNE2-228ENST00000639659 PCDHA13Q9Y5I0 950 aa14.32□□□□□ -0.12
SYNE2-228ENST00000639659 KLF2Q9Y5W3 355 aaPredicted RBP14.32□□□□□ -0.12
SYNE2-228ENST00000639659 LOC105369274A0A096LPK9 316 aa14.31□□□□□ -0.12
SYNE2-228ENST00000639659 LOC102723532A0A0G2JNH3 316 aa14.31□□□□□ -0.12
SYNE2-228ENST00000639659 RASAL1O95294 804 aa14.31□□□□□ -0.12
SYNE2-228ENST00000639659 ONECUT2O95948 504 aa14.31□□□□□ -0.12
SYNE2-228ENST00000639659 GAS8O95995 478 aa14.31□□□□□ -0.12
SYNE2-228ENST00000639659 MST1P26927 711 aa14.31□□□□□ -0.12
SYNE2-228ENST00000639659 PTGER4P35408 488 aa14.31□□□□□ -0.12
SYNE2-228ENST00000639659 EMP2P54851 167 aa14.31□□□□□ -0.12
SYNE2-228ENST00000639659 RWDD2BP57060 319 aa14.31□□□□□ -0.12
SYNE2-228ENST00000639659 PMP22Q01453 160 aa14.31□□□□□ -0.12
SYNE2-228ENST00000639659 GRB7Q14451 532 aa14.31□□□□□ -0.12
SYNE2-228ENST00000639659 SPA17Q15506 151 aa14.31□□□□□ -0.12
SYNE2-228ENST00000639659 P3H1Q32P28 736 aa14.31□□□□□ -0.12
SYNE2-228ENST00000639659 FASTKD1Q53R41 847 aaKnown RBP14.31□□□□□ -0.12
SYNE2-228ENST00000639659 ZNF324BQ6AW86 544 aaPredicted RBP14.31□□□□□ -0.12
SYNE2-228ENST00000639659 UNC5DQ6UXZ4 953 aa14.31□□□□□ -0.12
SYNE2-228ENST00000639659 PPP1R21Q6ZMI0 780 aa14.31□□□□□ -0.12
SYNE2-228ENST00000639659 NDUFAF7Q7L592 441 aa14.31□□□□□ -0.12
SYNE2-228ENST00000639659 LDB1Q86U70 411 aaPredicted RBP14.31□□□□□ -0.12
SYNE2-228ENST00000639659 LAPTM4BQ86VI4 370 aa14.31□□□□□ -0.12
SYNE2-228ENST00000639659 OR4N4Q8N0Y3 316 aa14.31□□□□□ -0.12
SYNE2-228ENST00000639659 ZNF808Q8N4W9 903 aaPredicted RBP14.31□□□□□ -0.12
SYNE2-228ENST00000639659 RAB42Q8N4Z0 105 aa14.31□□□□□ -0.12
SYNE2-228ENST00000639659 ASZ1Q8WWH4 475 aa14.31□□□□□ -0.12
SYNE2-228ENST00000639659 TRIM56Q9BRZ2 755 aaKnown RBP14.31□□□□□ -0.12
SYNE2-228ENST00000639659 MENTQ9BUN1 341 aa14.31□□□□□ -0.12
SYNE2-228ENST00000639659 ACAT2Q9BWD1 397 aa14.31□□□□□ -0.12
SYNE2-228ENST00000639659 RAB11FIP5Q9BXF6 653 aa14.31□□□□□ -0.12
SYNE2-228ENST00000639659 CHST11Q9NPF2 352 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms