RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 COMMD10Q9Y6G5 202 aa18.51■□□□□ 0.55
CLN3-260ENST00000637578 E5RI56 91 aa18.51■□□□□ 0.55
CLN3-260ENST00000637578 OR2B3O76000 313 aa18.51■□□□□ 0.55
CLN3-260ENST00000637578 CTSBP07858 339 aa18.51■□□□□ 0.55
CLN3-260ENST00000637578 ERGP11308 486 aa18.51■□□□□ 0.55
CLN3-260ENST00000637578 NFATC3Q12968 1075 aa18.51■□□□□ 0.55
CLN3-260ENST00000637578 UGT8Q16880 541 aa18.51■□□□□ 0.55
CLN3-260ENST00000637578 KLHL38Q2WGJ6 581 aa18.51■□□□□ 0.55
CLN3-260ENST00000637578 DEFB110Q30KQ9 67 aa18.51■□□□□ 0.55
CLN3-260ENST00000637578 HSP90AA5PQ58FG0 334 aa18.51■□□□□ 0.55
CLN3-260ENST00000637578 RHBDD2Q6NTF9 364 aa18.51■□□□□ 0.55
CLN3-260ENST00000637578 FAM198BQ6UWH4 519 aa18.51■□□□□ 0.55
CLN3-260ENST00000637578 KCNMB4Q86W47 210 aa18.51■□□□□ 0.55
CLN3-260ENST00000637578 SYTL1Q8IYJ3 562 aa18.51■□□□□ 0.55
CLN3-260ENST00000637578 PYROXD1Q8WU10 500 aa18.51■□□□□ 0.55
CLN3-260ENST00000637578 ZUFSPQ96AP4 578 aa18.51■□□□□ 0.55
CLN3-260ENST00000637578 FMO2Q99518 471 aa18.51■□□□□ 0.55
CLN3-260ENST00000637578 SPATA7Q9P0W8 599 aa18.51■□□□□ 0.55
CLN3-260ENST00000637578 KLHL20Q9Y2M5 609 aa18.51■□□□□ 0.55
CLN3-260ENST00000637578 DHRS7Q9Y394 339 aa18.51■□□□□ 0.55
CLN3-260ENST00000637578 SNRNP200O75643 2136 aaKnown RBP18.5■□□□□ 0.55
CLN3-260ENST00000637578 A0A1W2PPV9 198 aa18.5■□□□□ 0.55
CLN3-260ENST00000637578 KRT87PA6NCN2 255 aa18.5■□□□□ 0.55
CLN3-260ENST00000637578 ARHGEF33A8MVX0 844 aa18.5■□□□□ 0.55
CLN3-260ENST00000637578 MYO1CO00159 1063 aa18.5■□□□□ 0.55
CLN3-260ENST00000637578 HAUS5O94927 633 aa18.5■□□□□ 0.55
CLN3-260ENST00000637578 GCGRP47871 477 aa18.5■□□□□ 0.55
CLN3-260ENST00000637578 RPS18P62269 152 aaKnown RBP18.5■□□□□ 0.55
CLN3-260ENST00000637578 SF1Q15637 639 aaKnown RBP18.5■□□□□ 0.55
CLN3-260ENST00000637578 EEF1AKMT2Q5JPI9 291 aaKnown RBP18.5■□□□□ 0.55
CLN3-260ENST00000637578 FCRL6Q6DN72 434 aa18.5■□□□□ 0.55
CLN3-260ENST00000637578 TLDC1Q6P9B6 456 aa18.5■□□□□ 0.55
CLN3-260ENST00000637578 CNTN4Q8IWV2 1026 aa18.5■□□□□ 0.55
CLN3-260ENST00000637578 RAB42Q8N4Z0 105 aa18.5■□□□□ 0.55
CLN3-260ENST00000637578 C2CD4AQ8NCU7 369 aaPredicted RBP18.5■□□□□ 0.55
CLN3-260ENST00000637578 N4BP2L2Q92802 583 aaPredicted RBP18.5■□□□□ 0.55
CLN3-260ENST00000637578 EURLQ9NYK6 297 aa18.5■□□□□ 0.55
CLN3-260ENST00000637578 NFU1Q9UMS0 254 aa18.5■□□□□ 0.55
CLN3-260ENST00000637578 CDC14CA4D256 554 aa18.49■□□□□ 0.55
CLN3-260ENST00000637578 TARM1B6A8C7 271 aa18.49■□□□□ 0.55
CLN3-260ENST00000637578 ERVK-10P10266 1014 aa18.49■□□□□ 0.55
CLN3-260ENST00000637578 MAGEA4P43358 317 aa18.49■□□□□ 0.55
CLN3-260ENST00000637578 MPP1Q00013 466 aa18.49■□□□□ 0.55
CLN3-260ENST00000637578 TRMT10BQ6PF06 316 aaKnown RBP18.49■□□□□ 0.55
CLN3-260ENST00000637578 FIGLAQ6QHK4 219 aa18.49■□□□□ 0.55
CLN3-260ENST00000637578 CYHR1Q6ZMK1 362 aa18.49■□□□□ 0.55
CLN3-260ENST00000637578 CAPN12Q6ZSI9 719 aa18.49■□□□□ 0.55
CLN3-260ENST00000637578 TAX1BP1Q86VP1 789 aa18.49■□□□□ 0.55
CLN3-260ENST00000637578 MCATQ8IVS2 390 aaKnown RBP18.49■□□□□ 0.55
CLN3-260ENST00000637578 FBXO15Q8NCQ5 510 aaPredicted RBP18.49■□□□□ 0.55
CLN3-260ENST00000637578 OR2A1Q8NGT9 310 aa18.49■□□□□ 0.55
CLN3-260ENST00000637578 OR9A1PQ8NGU1 263 aa18.49■□□□□ 0.55
CLN3-260ENST00000637578 ADAMTS17Q8TE56 1095 aa18.49■□□□□ 0.55
CLN3-260ENST00000637578 THAP4Q8WY91 577 aa18.49■□□□□ 0.55
CLN3-260ENST00000637578 ZNF285Q96NJ3 590 aa18.49■□□□□ 0.55
CLN3-260ENST00000637578 AARSD1Q9BTE6 412 aaKnown RBP18.49■□□□□ 0.55
CLN3-260ENST00000637578 ANKZF1Q9H8Y5 726 aa18.49■□□□□ 0.55
CLN3-260ENST00000637578 RRAGDQ9NQL2 400 aaPredicted RBP18.49■□□□□ 0.55
CLN3-260ENST00000637578 IARS2Q9NSE4 1012 aaKnown RBP18.49■□□□□ 0.55
CLN3-260ENST00000637578 INTS7Q9NVH2 962 aaKnown RBP18.49■□□□□ 0.55
CLN3-260ENST00000637578 SPTA1P02549 2419 aa18.48■□□□□ 0.55
CLN3-260ENST00000637578 HELZ2Q9BYK8 2649 aaKnown RBP18.48■□□□□ 0.55
CLN3-260ENST00000637578 ZSCAN9O15535 394 aaPredicted RBP18.48■□□□□ 0.55
CLN3-260ENST00000637578 GABRB3P28472 473 aa18.48■□□□□ 0.55
CLN3-260ENST00000637578 GRIA3P42263 894 aa18.48■□□□□ 0.55
CLN3-260ENST00000637578 TIAL1Q01085 375 aaKnown RBP eCLIP18.48■□□□□ 0.55
CLN3-260ENST00000637578 IL10RAQ13651 578 aa18.48■□□□□ 0.55
CLN3-260ENST00000637578 ARHGAP19Q14CB8 494 aa18.48■□□□□ 0.55
CLN3-260ENST00000637578 PTCHD3Q3KNS1 767 aa18.48■□□□□ 0.55
CLN3-260ENST00000637578 TTLL9Q3SXZ7 439 aa18.48■□□□□ 0.55
CLN3-260ENST00000637578 GALNT7Q86SF2 657 aa18.48■□□□□ 0.55
CLN3-260ENST00000637578 APLFQ8IW19 511 aaPredicted RBP18.48■□□□□ 0.55
CLN3-260ENST00000637578 ENDOVQ8N8Q3 282 aaKnown RBP18.48■□□□□ 0.55
CLN3-260ENST00000637578 PROKR1Q8TCW9 393 aa18.48■□□□□ 0.55
CLN3-260ENST00000637578 CD200R1Q8TD46 325 aa18.48■□□□□ 0.55
CLN3-260ENST00000637578 ASB11Q8WXH4 323 aa18.48■□□□□ 0.55
CLN3-260ENST00000637578 INPP5DQ92835 1189 aa18.48■□□□□ 0.55
CLN3-260ENST00000637578 CERS2Q96G23 380 aa18.48■□□□□ 0.55
CLN3-260ENST00000637578 GBP5Q96PP8 586 aa18.48■□□□□ 0.55
CLN3-260ENST00000637578 CCDC68Q9H2F9 335 aa18.48■□□□□ 0.55
CLN3-260ENST00000637578 CAMSAP3Q9P1Y5 1249 aaPredicted RBP18.48■□□□□ 0.55
CLN3-260ENST00000637578 NOL12Q9UGY1 213 aaKnown RBP eCLIP18.48■□□□□ 0.55
CLN3-260ENST00000637578 TCFL5Q9UL49 500 aa18.48■□□□□ 0.55
CLN3-260ENST00000637578 V9GYY5 206 aaPredicted RBP18.48■□□□□ 0.55
CLN3-260ENST00000637578 GFYI3L273 518 aa18.47■□□□□ 0.55
CLN3-260ENST00000637578 MPC1LP0DKB6 136 aa18.47■□□□□ 0.55
CLN3-260ENST00000637578 CBSLP0DN79 551 aa18.47■□□□□ 0.55
CLN3-260ENST00000637578 ENO3P13929 434 aaPredicted RBP18.47■□□□□ 0.55
CLN3-260ENST00000637578 AGXTP21549 392 aa18.47■□□□□ 0.55
CLN3-260ENST00000637578 CBSP35520 551 aa18.47■□□□□ 0.55
CLN3-260ENST00000637578 PMS2P54278 862 aa18.47■□□□□ 0.55
CLN3-260ENST00000637578 FASTKQ14296 549 aaKnown RBP18.47■□□□□ 0.55
CLN3-260ENST00000637578 ZC3H12BQ5HYM0 836 aaKnown RBP18.47■□□□□ 0.55
CLN3-260ENST00000637578 PALM2Q8IXS6 379 aa18.47■□□□□ 0.55
CLN3-260ENST00000637578 OR2L3Q8NG85 312 aa18.47■□□□□ 0.55
CLN3-260ENST00000637578 ABHD17AQ96GS6 310 aa18.47■□□□□ 0.55
CLN3-260ENST00000637578 GPR21Q99679 349 aa18.47■□□□□ 0.55
CLN3-260ENST00000637578 SLC7A5P2Q9GIP4 190 aa18.47■□□□□ 0.55
CLN3-260ENST00000637578 SRPK3Q9UPE1 567 aa18.47■□□□□ 0.55
CLN3-260ENST00000637578 EIF3FO00303 357 aaPredicted RBP18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms