RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 LRRC61Q9BV99 259 aa19.45■□□□□ 0.7
CLN3-250ENST00000636839 CCDC177Q9NQR7 707 aaPredicted RBP19.45■□□□□ 0.7
CLN3-250ENST00000636839 LNPEPQ9UIQ6 1025 aa19.45■□□□□ 0.7
CLN3-250ENST00000636839 PCOLCE2Q9UKZ9 415 aa19.45■□□□□ 0.7
CLN3-250ENST00000636839 PLXND1Q9Y4D7 1925 aa19.45■□□□□ 0.7
CLN3-250ENST00000636839 SPAG17Q6Q759 2223 aa19.44■□□□□ 0.7
CLN3-250ENST00000636839 A0A1W2PPV9 198 aa19.44■□□□□ 0.7
CLN3-250ENST00000636839 GPR37L1O60883 481 aa19.44■□□□□ 0.7
CLN3-250ENST00000636839 CHEK2O96017 543 aa19.44■□□□□ 0.7
CLN3-250ENST00000636839 F3P13726 295 aa19.44■□□□□ 0.7
CLN3-250ENST00000636839 HOXA6P31267 233 aa19.44■□□□□ 0.7
CLN3-250ENST00000636839 HMGCS1Q01581 520 aa19.44■□□□□ 0.7
CLN3-250ENST00000636839 MEF2AQ02078 507 aaPredicted RBP19.44■□□□□ 0.7
CLN3-250ENST00000636839 CYP2A13Q16696 494 aa19.44■□□□□ 0.7
CLN3-250ENST00000636839 METTL21CQ5VZV1 264 aa19.44■□□□□ 0.7
CLN3-250ENST00000636839 WASH2PQ6VEQ5 465 aa19.44■□□□□ 0.7
CLN3-250ENST00000636839 SLCO4C1Q6ZQN7 724 aa19.44■□□□□ 0.7
CLN3-250ENST00000636839 TAF8Q7Z7C8 310 aa19.44■□□□□ 0.7
CLN3-250ENST00000636839 FAM20CQ8IXL6 584 aa19.44■□□□□ 0.7
CLN3-250ENST00000636839 POU5F2Q8N7G0 328 aa19.44■□□□□ 0.7
CLN3-250ENST00000636839 DNASE2BQ8WZ79 361 aa19.44■□□□□ 0.7
CLN3-250ENST00000636839 ZNF385DQ9H6B1 395 aa19.44■□□□□ 0.7
CLN3-250ENST00000636839 WASH6PQ9NQA3 447 aa19.44■□□□□ 0.7
CLN3-250ENST00000636839 APOBEC3BQ9UH17 382 aaKnown RBP19.44■□□□□ 0.7
CLN3-250ENST00000636839 ZNF490Q9ULM2 529 aaPredicted RBP19.44■□□□□ 0.7
CLN3-250ENST00000636839 SLC12A4Q9UP95 1085 aa19.44■□□□□ 0.7
CLN3-250ENST00000636839 ICKQ9UPZ9 632 aa19.44■□□□□ 0.7
CLN3-250ENST00000636839 COPG1Q9Y678 874 aaKnown RBP19.44■□□□□ 0.7
CLN3-250ENST00000636839 TTC28Q96AY4 2481 aa19.44■□□□□ 0.7
CLN3-250ENST00000636839 PDYNP01213 254 aa19.44■□□□□ 0.7
CLN3-250ENST00000636839 CTSEP14091 401 aa19.44■□□□□ 0.7
CLN3-250ENST00000636839 CPA2P48052 419 aa19.44■□□□□ 0.7
CLN3-250ENST00000636839 LACTB2Q53H82 288 aaPredicted RBP19.44■□□□□ 0.7
CLN3-250ENST00000636839 CHSY3Q70JA7 882 aa19.44■□□□□ 0.7
CLN3-250ENST00000636839 TMPRSS11BQ86T26 416 aa19.44■□□□□ 0.7
CLN3-250ENST00000636839 PHF6Q8IWS0 365 aaKnown RBP eCLIP19.44■□□□□ 0.7
CLN3-250ENST00000636839 KIRREL3Q8IZU9 778 aa19.44■□□□□ 0.7
CLN3-250ENST00000636839 SPNS1Q9H2V7 528 aa19.44■□□□□ 0.7
CLN3-250ENST00000636839 TAC3Q9UHF0 121 aa19.44■□□□□ 0.7
CLN3-250ENST00000636839 STK38LQ9Y2H1 464 aa19.44■□□□□ 0.7
CLN3-250ENST00000636839 CCL27Q9Y4X3 112 aa19.44■□□□□ 0.7
CLN3-250ENST00000636839 KCNE2Q9Y6J6 123 aa19.44■□□□□ 0.7
CLN3-250ENST00000636839 THADAQ6YHU6 1953 aa19.43■□□□□ 0.7
CLN3-250ENST00000636839 ULK1O75385 1050 aa19.43■□□□□ 0.7
CLN3-250ENST00000636839 SCTRP47872 440 aa19.43■□□□□ 0.7
CLN3-250ENST00000636839 IYDQ6PHW0 289 aa19.43■□□□□ 0.7
CLN3-250ENST00000636839 MVB12BQ9H7P6 319 aa19.43■□□□□ 0.7
CLN3-250ENST00000636839 TMEM74BQ9NUR3 256 aa19.43■□□□□ 0.7
CLN3-250ENST00000636839 UBDO15205 165 aa19.42■□□□□ 0.7
CLN3-250ENST00000636839 CSF2P04141 144 aa19.42■□□□□ 0.7
CLN3-250ENST00000636839 GNAZP19086 355 aa19.42■□□□□ 0.7
CLN3-250ENST00000636839 NME5P56597 212 aa19.42■□□□□ 0.7
CLN3-250ENST00000636839 PRAMEF13Q5VWM6 474 aa19.42■□□□□ 0.7
CLN3-250ENST00000636839 GBP7Q8N8V2 638 aaPredicted RBP19.42■□□□□ 0.7
CLN3-250ENST00000636839 SH3KBP1Q96B97 665 aa19.42■□□□□ 0.7
CLN3-250ENST00000636839 PTCD3Q96EY7 689 aaKnown RBP19.42■□□□□ 0.7
CLN3-250ENST00000636839 LOC100653049A0A140TA62 436 aa19.42■□□□□ 0.7
CLN3-250ENST00000636839 BCAT2O15382 392 aaPredicted RBP19.42■□□□□ 0.7
CLN3-250ENST00000636839 HRO43593 1189 aa19.42■□□□□ 0.7
CLN3-250ENST00000636839 KRT34O76011 436 aa19.42■□□□□ 0.7
CLN3-250ENST00000636839 CDH1P12830 882 aa19.42■□□□□ 0.7
CLN3-250ENST00000636839 JUPP14923 745 aa19.42■□□□□ 0.7
CLN3-250ENST00000636839 PKLRP30613 574 aa19.42■□□□□ 0.7
CLN3-250ENST00000636839 DHPSP49366 369 aaPredicted RBP19.42■□□□□ 0.7
CLN3-250ENST00000636839 RAB28P51157 221 aa19.42■□□□□ 0.7
CLN3-250ENST00000636839 DIO3P55073 304 aa19.42■□□□□ 0.7
CLN3-250ENST00000636839 NXPH1P58417 271 aa19.42■□□□□ 0.7
CLN3-250ENST00000636839 KLF10Q13118 480 aa19.42■□□□□ 0.7
CLN3-250ENST00000636839 LPCAT2Q7L5N7 544 aa19.42■□□□□ 0.7
CLN3-250ENST00000636839 WDR5BQ86VZ2 330 aa19.42■□□□□ 0.7
CLN3-250ENST00000636839 ZNF740Q8NDX6 193 aa19.42■□□□□ 0.7
CLN3-250ENST00000636839 OR4E2Q8NGC2 313 aa19.42■□□□□ 0.7
CLN3-250ENST00000636839 FBXO27Q8NI29 283 aa19.42■□□□□ 0.7
CLN3-250ENST00000636839 HMGCLL1Q8TB92 370 aa19.42■□□□□ 0.7
CLN3-250ENST00000636839 STON2Q8WXE9 905 aa19.42■□□□□ 0.7
CLN3-250ENST00000636839 USP7Q93009 1102 aa19.42■□□□□ 0.7
CLN3-250ENST00000636839 C1orf50Q9BV19 199 aa19.42■□□□□ 0.7
CLN3-250ENST00000636839 GSDMCQ9BYG8 508 aa19.42■□□□□ 0.7
CLN3-250ENST00000636839 CUEDC1Q9NWM3 386 aaPredicted RBP19.42■□□□□ 0.7
CLN3-250ENST00000636839 SPHK1Q9NYA1 384 aa19.42■□□□□ 0.7
CLN3-250ENST00000636839 CCDC163A0A0D9SF12 145 aa19.41■□□□□ 0.7
CLN3-250ENST00000636839 SDC3O75056 442 aa19.41■□□□□ 0.7
CLN3-250ENST00000636839 PRR35P0CG20 571 aa19.41■□□□□ 0.7
CLN3-250ENST00000636839 NCALDP61601 193 aa19.41■□□□□ 0.7
CLN3-250ENST00000636839 ARHGAP19Q14CB8 494 aa19.41■□□□□ 0.7
CLN3-250ENST00000636839 GGTA1PQ4G0N0 100 aa19.41■□□□□ 0.7
CLN3-250ENST00000636839 IQCHQ86VS3 1027 aa19.41■□□□□ 0.7
CLN3-250ENST00000636839 DCP2Q8IU60 420 aaKnown RBP19.41■□□□□ 0.7
CLN3-250ENST00000636839 NAGSQ8N159 534 aa19.41■□□□□ 0.7
CLN3-250ENST00000636839 FAM46DQ8NEK8 389 aa19.41■□□□□ 0.7
CLN3-250ENST00000636839 FAM174AQ8TBP5 190 aa19.41■□□□□ 0.7
CLN3-250ENST00000636839 SLC5A11Q8WWX8 675 aa19.41■□□□□ 0.7
CLN3-250ENST00000636839 CXorf40BQ96DE9 158 aa19.41■□□□□ 0.7
CLN3-250ENST00000636839 MTERF1Q99551 399 aaKnown RBP19.41■□□□□ 0.7
CLN3-250ENST00000636839 MIPEPQ99797 713 aa19.41■□□□□ 0.7
CLN3-250ENST00000636839 SLC29A3Q9BZD2 475 aa19.41■□□□□ 0.7
CLN3-250ENST00000636839 ELOVL6Q9H5J4 265 aa19.41■□□□□ 0.7
CLN3-250ENST00000636839 DYRK1BQ9Y463 629 aa19.41■□□□□ 0.7
CLN3-250ENST00000636839 LSM1O15116 133 aaKnown RBP19.41■□□□□ 0.7
CLN3-250ENST00000636839 SH3BGRLO75368 114 aa19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms