RNA–Protein interactions for RNA: ENST00000622836.1

PCDHGC3-208, Transcript of protocadherin gamma subfamily C, 3, human

TSL 3

Gene PCDHGC3, Length 795 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PCDHGC3-208	ENST00000622836	PCDHB3	Q9Y5E6	796 aa		13.45	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	ZFHX4	Q86UP3	3567 aa		13.45	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	ZNF891	A8MT65	544 aa	Predicted RBP	13.44	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	SLC16A5	O15375	505 aa		13.44	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	CCNDBP1	O95273	360 aa		13.44	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	HBQ1	P09105	142 aa		13.44	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	ATXN8OS	P0DMR3	200 aa		13.44	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	GRIA3	P42263	894 aa		13.44	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	PGGT1B	P53609	377 aa		13.44	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	GPX6	P59796	221 aa		13.44	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	RHD	Q02161	417 aa		13.44	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	TAF1B	Q53T94	588 aa	Predicted RBP	13.44	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	FIGLA	Q6QHK4	219 aa		13.44	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	PPM1N	Q8N819	430 aa		13.44	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	OR2L3	Q8NG85	312 aa		13.44	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	FBF1	Q8TES7	1133 aa		13.44	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	ZNF480	Q8WV37	535 aa		13.44	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	ZUFSP	Q96AP4	578 aa		13.44	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	CPNE1	Q99829	537 aa		13.44	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	TRIM54	Q9BYV2	358 aa		13.44	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	TWSG1	Q9GZX9	223 aa		13.44	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	CHRNA10	Q9GZZ6	450 aa		13.44	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	PARVB	Q9HBI1	364 aa		13.44	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	LRRC4C	Q9HCJ2	640 aa		13.44	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	MRPS30	Q9NP92	439 aa	Known RBP	13.44	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	TAC3	Q9UHF0	121 aa		13.44	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	IL17B	Q9UHF5	180 aa		13.44	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	DMGDH	Q9UI17	866 aa	Known RBP	13.44	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	KCND3	Q9UK17	655 aa		13.44	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	ADAMTS6	Q9UKP5	1117 aa		13.44	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	AP1M2	Q9Y6Q5	423 aa		13.44	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	SNRNP200	O75643	2136 aa	Known RBP	13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	SPTB	P11277	2137 aa		13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836		A0A1W2PPV9	198 aa		13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	FAM159B	A6NKW6	160 aa		13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	CXorf49	A8MYA2	514 aa	Predicted RBP	13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	TARM1	B6A8C7	271 aa		13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	ZSCAN9	O15535	394 aa	Predicted RBP	13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	ZNF749	O43361	778 aa		13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	PRICKLE3	O43900	615 aa	Predicted RBP	13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	PRKAR1A	P10644	381 aa		13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	ERG	P11308	486 aa		13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	WT1	P19544	449 aa	Predicted RBP	13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	GP5	P40197	560 aa		13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	CYP4F2	P78329	520 aa		13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	MC1R	Q01726	317 aa		13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	GPS2	Q13227	327 aa		13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	DNASE1L3	Q13609	305 aa		13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	ZNF460	Q14592	562 aa		13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	KBTBD12	Q3ZCT8	623 aa		13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	FCRL6	Q6DN72	434 aa		13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	C16orf46	Q6P387	395 aa		13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	TLDC1	Q6P9B6	456 aa		13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	FAM199X	Q6PEV8	388 aa	Predicted RBP	13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	CYS1	Q717R9	158 aa		13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	ADCK2	Q7Z695	626 aa		13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	MCAT	Q8IVS2	390 aa	Known RBP	13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	DNAJC22	Q8N4W6	341 aa		13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	NKAP	Q8N5F7	415 aa	Known RBP	13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	ZNF655	Q8N720	491 aa	Predicted RBP	13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	OR2A1	Q8NGT9	310 aa		13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	CT55	Q8WUE5	264 aa		13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	SNRNP27	Q8WVK2	155 aa	Known RBP	13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	STARD8	Q92502	1023 aa		13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	SEC14L1	Q92503	715 aa		13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	ALKBH8	Q96BT7	664 aa	Known RBP	13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	TSPAN17	Q96FV3	270 aa		13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	MED8	Q96G25	268 aa		13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	SLC45A3	Q96JT2	553 aa		13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	CCDC138	Q96M89	665 aa		13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	UBL7	Q96S82	380 aa	Predicted RBP	13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	DPH7	Q9BTV6	452 aa		13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	SLC12A9	Q9BXP2	914 aa		13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	FAM129A	Q9BZQ8	928 aa		13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	SPRTN	Q9H040	489 aa	Predicted RBP	13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	GPAM	Q9HCL2	828 aa		13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	ZDHHC18	Q9NUE0	388 aa		13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	TXLNG	Q9NUQ3	528 aa		13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	UTP6	Q9NYH9	597 aa	Known RBP	13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	EURL	Q9NYK6	297 aa		13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	PDE10A	Q9Y233	779 aa		13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	MGA	Q8IWI9	3026 aa		13.43	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	EIF4E1B	A6NMX2	242 aa	Known RBP	13.42	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	C21orf140	B9A014	251 aa		13.42	□□□□□ -0.26
PCDHGC3-208	ENST00000622836		E7ENX8	843 aa		13.42	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	MEN1	O00255	615 aa		13.42	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	HCRTR1	O43613	425 aa		13.42	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	ZNF37A	P17032	561 aa	Predicted RBP	13.42	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	AGXT	P21549	392 aa		13.42	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	IMPA1	P29218	277 aa		13.42	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	PHB	P35232	272 aa		13.42	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	GABRA4	P48169	554 aa		13.42	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	TAS2R39	P59534	338 aa		13.42	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	RPS15	P62841	145 aa	Known RBP	13.42	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	POU4F1	Q01851	419 aa		13.42	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	TAP2	Q03519	686 aa		13.42	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	USP10	Q14694	798 aa	Known RBP	13.42	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	ICE2	Q659A1	982 aa		13.42	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	SLC38A9	Q8NBW4	561 aa		13.42	□□□□□ -0.26
PCDHGC3-208	ENST00000622836	DLG3	Q92796	817 aa		13.42	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms