RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 ZNF552Q9H707 407 aaPredicted RBP11.42□□□□□ -0.58
UPF3B-204ENST00000619445 PLEKHB1Q9UF11 243 aaPredicted RBP11.42□□□□□ -0.58
UPF3B-204ENST00000619445 CDC23Q9UJX2 597 aa11.42□□□□□ -0.58
UPF3B-204ENST00000619445 CDC14AQ9UNH5 594 aa11.42□□□□□ -0.58
UPF3B-204ENST00000619445 IQCF5A8MTL0 148 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 NRDCO43847 1150 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 PRICKLE3O43900 615 aaPredicted RBP11.41□□□□□ -0.58
UPF3B-204ENST00000619445 VPS26AO75436 327 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 CCNDBP1O95273 360 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 ERVK-10P10266 1014 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 OGNP20774 298 aaKnown RBP11.41□□□□□ -0.58
UPF3B-204ENST00000619445 ITGA3P26006 1051 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 CMPK1P30085 196 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 GRIA3P42263 894 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 AP2B1P63010 937 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 OCA2Q04671 838 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 RAPSNQ13702 412 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 SEMA3AQ14563 771 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 SLC9A5Q14940 896 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 RBBP7Q16576 425 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 NKG7Q16617 165 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 MUM1Q2TAK8 710 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 TUBB8Q3ZCM7 444 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 PLEKHN1Q494U1 663 aaPredicted RBP11.41□□□□□ -0.58
UPF3B-204ENST00000619445 B3GNTL1Q67FW5 361 aaPredicted RBP11.41□□□□□ -0.58
UPF3B-204ENST00000619445 LRRC8BQ6P9F7 803 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 SPC24Q8NBT2 197 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 TRIM58Q8NG06 486 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 SNRNP40Q96DI7 357 aaKnown RBP11.41□□□□□ -0.58
UPF3B-204ENST00000619445 MVB12AQ96EY5 273 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 WDR77Q9BQA1 342 aaPredicted RBP11.41□□□□□ -0.58
UPF3B-204ENST00000619445 EPS8L2Q9H6S3 715 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 MARCH4Q9P2E8 410 aaPredicted RBP11.41□□□□□ -0.58
UPF3B-204ENST00000619445 FBXL4Q9UKA2 621 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 COPG1Q9Y678 874 aaKnown RBP11.41□□□□□ -0.58
UPF3B-204ENST00000619445 SPENQ96T58 3664 aaKnown RBP11.41□□□□□ -0.58
UPF3B-204ENST00000619445 HEATR5BQ9P2D3 2071 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 MDC1Q14676 2089 aaKnown RBP11.41□□□□□ -0.58
UPF3B-204ENST00000619445 MAGEB16A2A368 324 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 HYKKA2RU49 373 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 TXNDC9O14530 226 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 VAPBO95292 243 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 FGGP02679 453 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 CATP04040 527 aaKnown RBP11.41□□□□□ -0.58
UPF3B-204ENST00000619445 CCDC175P0C221 793 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 PKMP14618 531 aaKnown RBP11.41□□□□□ -0.58
UPF3B-204ENST00000619445 ETS1P14921 441 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 FDXRP22570 491 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 EIF3BP55884 814 aaKnown RBP11.41□□□□□ -0.58
UPF3B-204ENST00000619445 TYSND1Q2T9J0 566 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 TTLL9Q3SXZ7 439 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 ANKRD20A4Q4UJ75 823 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 WASHC2DQ5SRD0 308 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 FCRL6Q6DN72 434 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 KIAA0930Q6ICG6 404 aaPredicted RBP11.41□□□□□ -0.58
UPF3B-204ENST00000619445 KRT222Q8N1A0 295 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 OR2L3Q8NG85 312 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 LKAAEAR1Q8TD35 194 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 SMPDL3AQ92484 453 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 IL17FQ96PD4 163 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 SPSB2Q99619 263 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 ZFYVE21Q9BQ24 234 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 LHPPQ9H008 270 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 ZNF304Q9HCX3 659 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 SLC22A11Q9NSA0 550 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 INTS10Q9NVR2 710 aaKnown RBP11.41□□□□□ -0.58
UPF3B-204ENST00000619445 SAMD15Q9P1V8 674 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 KLHL42Q9P2K6 505 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 ZNF282Q9UDV7 671 aaPredicted RBP11.41□□□□□ -0.58
UPF3B-204ENST00000619445 SOX13Q9UN79 622 aa11.41□□□□□ -0.58
UPF3B-204ENST00000619445 SVILO95425 2214 aa11.4□□□□□ -0.58
UPF3B-204ENST00000619445 DIDO1Q9BTC0 2240 aaKnown RBP11.4□□□□□ -0.58
UPF3B-204ENST00000619445 MYO9AB2RTY4 2548 aa11.4□□□□□ -0.58
UPF3B-204ENST00000619445 CREBBPQ92793 2442 aa11.4□□□□□ -0.58
UPF3B-204ENST00000619445 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.4□□□□□ -0.59
UPF3B-204ENST00000619445 A0A0U1RQJ8 604 aa11.4□□□□□ -0.59
UPF3B-204ENST00000619445 OR2A25A4D2G3 310 aa11.4□□□□□ -0.59
UPF3B-204ENST00000619445 ANKUB1A6NFN9 424 aa11.4□□□□□ -0.59
UPF3B-204ENST00000619445 VSTM2BA6NLU5 285 aa11.4□□□□□ -0.59
UPF3B-204ENST00000619445 E5RI56 91 aa11.4□□□□□ -0.59
UPF3B-204ENST00000619445 CNOT3O75175 753 aaKnown RBP11.4□□□□□ -0.59
UPF3B-204ENST00000619445 MATN4O95460 622 aa11.4□□□□□ -0.59
UPF3B-204ENST00000619445 CBX6O95503 412 aa11.4□□□□□ -0.59
UPF3B-204ENST00000619445 NMBRP28336 390 aa11.4□□□□□ -0.59
UPF3B-204ENST00000619445 VSX2P58304 361 aaPredicted RBP11.4□□□□□ -0.59
UPF3B-204ENST00000619445 RELAQ04206 551 aa11.4□□□□□ -0.59
UPF3B-204ENST00000619445 SIX1Q15475 284 aaPredicted RBP11.4□□□□□ -0.59
UPF3B-204ENST00000619445 GARNL3Q5VVW2 1013 aa11.4□□□□□ -0.59
UPF3B-204ENST00000619445 IGFL2Q6UWQ7 119 aa11.4□□□□□ -0.59
UPF3B-204ENST00000619445 MICALCLQ6ZW33 695 aa11.4□□□□□ -0.59
UPF3B-204ENST00000619445 NEK10Q6ZWH5 1172 aa11.4□□□□□ -0.59
UPF3B-204ENST00000619445 RNF44Q7L0R7 432 aa11.4□□□□□ -0.59
UPF3B-204ENST00000619445 LDB1Q86U70 411 aaPredicted RBP11.4□□□□□ -0.59
UPF3B-204ENST00000619445 TAX1BP1Q86VP1 789 aa11.4□□□□□ -0.59
UPF3B-204ENST00000619445 LMNTD2Q8IXW0 634 aa11.4□□□□□ -0.59
UPF3B-204ENST00000619445 CISD2Q8N5K1 135 aaKnown RBP11.4□□□□□ -0.59
UPF3B-204ENST00000619445 C2orf73Q8N5S3 287 aaPredicted RBP11.4□□□□□ -0.59
UPF3B-204ENST00000619445 OR2A1Q8NGT9 310 aa11.4□□□□□ -0.59
UPF3B-204ENST00000619445 OR9A1PQ8NGU1 263 aa11.4□□□□□ -0.59
UPF3B-204ENST00000619445 PRR7Q8TB68 274 aa11.4□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms