RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 OR2A25A4D2G3 310 aa12.51□□□□□ -0.41
LIG1-212ENST00000596549 CTAGE9A4FU28 777 aa12.51□□□□□ -0.41
LIG1-212ENST00000596549 PFDN6O15212 129 aa12.51□□□□□ -0.41
LIG1-212ENST00000596549 FKBP9O95302 570 aa12.51□□□□□ -0.41
LIG1-212ENST00000596549 UMODP07911 640 aa12.51□□□□□ -0.41
LIG1-212ENST00000596549 IVDP26440 423 aa12.51□□□□□ -0.41
LIG1-212ENST00000596549 OTX2P32243 289 aa12.51□□□□□ -0.41
LIG1-212ENST00000596549 DCDP81605 110 aaKnown RBP12.51□□□□□ -0.41
LIG1-212ENST00000596549 FOXK1P85037 733 aa12.51□□□□□ -0.41
LIG1-212ENST00000596549 DHX9Q08211 1270 aaKnown RBP12.51□□□□□ -0.41
LIG1-212ENST00000596549 THOC5Q13769 683 aaKnown RBP12.51□□□□□ -0.41
LIG1-212ENST00000596549 PPP1R7Q15435 360 aa12.51□□□□□ -0.41
LIG1-212ENST00000596549 LONRF1Q17RB8 773 aa12.51□□□□□ -0.41
LIG1-212ENST00000596549 NKAIN1Q4KMZ8 207 aa12.51□□□□□ -0.41
LIG1-212ENST00000596549 MSS51Q4VC12 460 aa12.51□□□□□ -0.41
LIG1-212ENST00000596549 MLIPQ5VWP3 458 aa12.51□□□□□ -0.41
LIG1-212ENST00000596549 PAPD7Q5XG87 772 aaKnown RBP12.51□□□□□ -0.41
LIG1-212ENST00000596549 TTC23LQ6PF05 361 aa12.51□□□□□ -0.41
LIG1-212ENST00000596549 SUSD1Q6UWL2 747 aa12.51□□□□□ -0.41
LIG1-212ENST00000596549 MCATQ8IVS2 390 aaKnown RBP12.51□□□□□ -0.41
LIG1-212ENST00000596549 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.51□□□□□ -0.41
LIG1-212ENST00000596549 FDCSPQ8NFU4 85 aa12.51□□□□□ -0.41
LIG1-212ENST00000596549 OR9A1PQ8NGU1 263 aa12.51□□□□□ -0.41
LIG1-212ENST00000596549 ZDHHC19Q8WVZ1 309 aaPredicted RBP12.51□□□□□ -0.41
LIG1-212ENST00000596549 PDLIM2Q96JY6 352 aa12.51□□□□□ -0.41
LIG1-212ENST00000596549 FOPNLQ96NB1 174 aa12.51□□□□□ -0.41
LIG1-212ENST00000596549 NDC1Q9BTX1 674 aa12.51□□□□□ -0.41
LIG1-212ENST00000596549 SLC25A23Q9BV35 468 aa12.51□□□□□ -0.41
LIG1-212ENST00000596549 NUDT9Q9BW91 350 aa12.51□□□□□ -0.41
LIG1-212ENST00000596549 C20orf96Q9NUD7 363 aaPredicted RBP12.51□□□□□ -0.41
LIG1-212ENST00000596549 INTS7Q9NVH2 962 aaKnown RBP12.51□□□□□ -0.41
LIG1-212ENST00000596549 IFT80Q9P2H3 777 aaPredicted RBP12.51□□□□□ -0.41
LIG1-212ENST00000596549 SLC17A6Q9P2U8 582 aa12.51□□□□□ -0.41
LIG1-212ENST00000596549 ASIC3Q9UHC3 531 aa12.51□□□□□ -0.41
LIG1-212ENST00000596549 VPS9D1Q9Y2B5 631 aa12.51□□□□□ -0.41
LIG1-212ENST00000596549 PTRH2Q9Y3E5 179 aaKnown RBP12.51□□□□□ -0.41
LIG1-212ENST00000596549 SPTA1P02549 2419 aa12.51□□□□□ -0.41
LIG1-212ENST00000596549 SEC16AO15027 2179 aa12.5□□□□□ -0.41
LIG1-212ENST00000596549 SHANK1Q9Y566 2161 aa12.5□□□□□ -0.41
LIG1-212ENST00000596549 IGKV1-8A0A0C4DH67 115 aa12.5□□□□□ -0.41
LIG1-212ENST00000596549 MAGEB16A2A368 324 aa12.5□□□□□ -0.41
LIG1-212ENST00000596549 FITM1A5D6W6 292 aa12.5□□□□□ -0.41
LIG1-212ENST00000596549 TARM1B6A8C7 271 aa12.5□□□□□ -0.41
LIG1-212ENST00000596549 MASP2O00187 686 aa12.5□□□□□ -0.41
LIG1-212ENST00000596549 HAUS5O94927 633 aa12.5□□□□□ -0.41
LIG1-212ENST00000596549 TCP1P17987 556 aaKnown RBP12.5□□□□□ -0.41
LIG1-212ENST00000596549 PGAM1P18669 254 aa12.5□□□□□ -0.41
LIG1-212ENST00000596549 FOLR3P41439 243 aa12.5□□□□□ -0.41
LIG1-212ENST00000596549 CCL11P51671 97 aa12.5□□□□□ -0.41
LIG1-212ENST00000596549 TIAL1Q01085 375 aaKnown RBP eCLIP12.5□□□□□ -0.41
LIG1-212ENST00000596549 KCNC4Q03721 635 aa12.5□□□□□ -0.41
LIG1-212ENST00000596549 IGFBP7Q16270 282 aa12.5□□□□□ -0.41
LIG1-212ENST00000596549 HSP90AA5PQ58FG0 334 aa12.5□□□□□ -0.41
LIG1-212ENST00000596549 TTLL10Q6ZVT0 673 aa12.5□□□□□ -0.41
LIG1-212ENST00000596549 NEK10Q6ZWH5 1172 aa12.5□□□□□ -0.41
LIG1-212ENST00000596549 PPP1R32Q7Z5V6 425 aa12.5□□□□□ -0.41
LIG1-212ENST00000596549 KCNMB4Q86W47 210 aa12.5□□□□□ -0.41
LIG1-212ENST00000596549 RAB43Q86YS6 212 aa12.5□□□□□ -0.41
LIG1-212ENST00000596549 CPNE9Q8IYJ1 553 aa12.5□□□□□ -0.41
LIG1-212ENST00000596549 RAB42Q8N4Z0 105 aa12.5□□□□□ -0.41
LIG1-212ENST00000596549 METTL27Q8N6F8 245 aaPredicted RBP12.5□□□□□ -0.41
LIG1-212ENST00000596549 PPFIBP2Q8ND30 876 aa12.5□□□□□ -0.41
LIG1-212ENST00000596549 OR2Y1Q8NGV0 311 aa12.5□□□□□ -0.41
LIG1-212ENST00000596549 MAGEC3Q8TD91 643 aa12.5□□□□□ -0.41
LIG1-212ENST00000596549 PKP4Q99569 1192 aa12.5□□□□□ -0.41
LIG1-212ENST00000596549 SPSB2Q99619 263 aa12.5□□□□□ -0.41
LIG1-212ENST00000596549 GPR21Q99679 349 aa12.5□□□□□ -0.41
LIG1-212ENST00000596549 C17orf62Q9BQA9 187 aa12.5□□□□□ -0.41
LIG1-212ENST00000596549 SELENOSQ9BQE4 189 aa12.5□□□□□ -0.41
LIG1-212ENST00000596549 AARSD1Q9BTE6 412 aaKnown RBP12.5□□□□□ -0.41
LIG1-212ENST00000596549 ACAT2Q9BWD1 397 aa12.5□□□□□ -0.41
LIG1-212ENST00000596549 CUTCQ9NTM9 273 aa12.5□□□□□ -0.41
LIG1-212ENST00000596549 NDOR1Q9UHB4 597 aa12.5□□□□□ -0.41
LIG1-212ENST00000596549 PCYOX1Q9UHG3 505 aa12.5□□□□□ -0.41
LIG1-212ENST00000596549 FBXO5Q9UKT4 447 aa12.5□□□□□ -0.41
LIG1-212ENST00000596549 PYCARDQ9ULZ3 195 aa12.5□□□□□ -0.41
LIG1-212ENST00000596549 FAM169AQ9Y6X4 670 aa12.5□□□□□ -0.41
LIG1-212ENST00000596549 CPAMD8Q8IZJ3 1885 aa12.5□□□□□ -0.41
LIG1-212ENST00000596549 DOCK10Q96BY6 2186 aa12.5□□□□□ -0.41
LIG1-212ENST00000596549 LOC105369274A0A096LPK9 316 aa12.49□□□□□ -0.41
LIG1-212ENST00000596549 LOC102723532A0A0G2JNH3 316 aa12.49□□□□□ -0.41
LIG1-212ENST00000596549 A0A0J9YVX5 310 aa12.49□□□□□ -0.41
LIG1-212ENST00000596549 DSCR3O14972 297 aa12.49□□□□□ -0.41
LIG1-212ENST00000596549 SLC16A8O95907 504 aa12.49□□□□□ -0.41
LIG1-212ENST00000596549 ONECUT2O95948 504 aa12.49□□□□□ -0.41
LIG1-212ENST00000596549 CATP04040 527 aaKnown RBP12.49□□□□□ -0.41
LIG1-212ENST00000596549 MPC1LP0DKB6 136 aa12.49□□□□□ -0.41
LIG1-212ENST00000596549 PGDP52209 483 aa12.49□□□□□ -0.41
LIG1-212ENST00000596549 VSX2P58304 361 aaPredicted RBP12.49□□□□□ -0.41
LIG1-212ENST00000596549 TTLL9Q3SXZ7 439 aa12.49□□□□□ -0.41
LIG1-212ENST00000596549 NADK2Q4G0N4 442 aa12.49□□□□□ -0.41
LIG1-212ENST00000596549 ZC3H12BQ5HYM0 836 aaKnown RBP12.49□□□□□ -0.41
LIG1-212ENST00000596549 RBM20Q5T481 1227 aaKnown RBP12.49□□□□□ -0.41
LIG1-212ENST00000596549 CYHR1Q6ZMK1 362 aa12.49□□□□□ -0.41
LIG1-212ENST00000596549 MED25Q71SY5 747 aa12.49□□□□□ -0.41
LIG1-212ENST00000596549 PIWIL4Q7Z3Z4 852 aaKnown RBP12.49□□□□□ -0.41
LIG1-212ENST00000596549 CREG2Q8IUH2 290 aa12.49□□□□□ -0.41
LIG1-212ENST00000596549 IGDCC3Q8IVU1 814 aa12.49□□□□□ -0.41
LIG1-212ENST00000596549 LMNTD2Q8IXW0 634 aa12.49□□□□□ -0.41
LIG1-212ENST00000596549 LRRC56Q8IYG6 542 aaPredicted RBP12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms