RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 ELK3P41970 407 aa17.04■□□□□ 0.32
SHKBP1-204ENST00000594862 ITGA8P53708 1063 aa17.04■□□□□ 0.32
SHKBP1-204ENST00000594862 ETF1P62495 437 aaKnown RBP17.04■□□□□ 0.32
SHKBP1-204ENST00000594862 DCDP81605 110 aaKnown RBP17.04■□□□□ 0.32
SHKBP1-204ENST00000594862 CALCOCO2Q13137 446 aa17.04■□□□□ 0.32
SHKBP1-204ENST00000594862 SP140Q13342 867 aa17.04■□□□□ 0.32
SHKBP1-204ENST00000594862 CCSMST1Q4G0I0 132 aa17.04■□□□□ 0.32
SHKBP1-204ENST00000594862 MSS51Q4VC12 460 aa17.04■□□□□ 0.32
SHKBP1-204ENST00000594862 EEF1AKMT2Q5JPI9 291 aaKnown RBP17.04■□□□□ 0.32
SHKBP1-204ENST00000594862 ATP1A1-AS1Q5TC04 95 aa17.04■□□□□ 0.32
SHKBP1-204ENST00000594862 PRAMEF17Q5VTA0 474 aa17.04■□□□□ 0.32
SHKBP1-204ENST00000594862 ZNF385CQ66K41 422 aaPredicted RBP17.04■□□□□ 0.32
SHKBP1-204ENST00000594862 RAB43Q86YS6 212 aa17.04■□□□□ 0.32
SHKBP1-204ENST00000594862 PALM2Q8IXS6 379 aa17.04■□□□□ 0.32
SHKBP1-204ENST00000594862 C2orf73Q8N5S3 287 aaPredicted RBP17.04■□□□□ 0.32
SHKBP1-204ENST00000594862 TTC29Q8NA56 475 aaPredicted RBP17.04■□□□□ 0.32
SHKBP1-204ENST00000594862 OR2A1Q8NGT9 310 aa17.04■□□□□ 0.32
SHKBP1-204ENST00000594862 GIMAP7Q8NHV1 300 aa17.04■□□□□ 0.32
SHKBP1-204ENST00000594862 ASB11Q8WXH4 323 aa17.04■□□□□ 0.32
SHKBP1-204ENST00000594862 IP6K3Q96PC2 410 aa17.04■□□□□ 0.32
SHKBP1-204ENST00000594862 KRT12Q99456 494 aa17.04■□□□□ 0.32
SHKBP1-204ENST00000594862 SELENOSQ9BQE4 189 aa17.04■□□□□ 0.32
SHKBP1-204ENST00000594862 TRIM51Q9BSJ1 452 aa17.04■□□□□ 0.32
SHKBP1-204ENST00000594862 AKIRIN1Q9H9L7 192 aaPredicted RBP17.04■□□□□ 0.32
SHKBP1-204ENST00000594862 PPANQ9NQ55 473 aaKnown RBP17.04■□□□□ 0.32
SHKBP1-204ENST00000594862 GALPQ9UBC7 116 aa17.04■□□□□ 0.32
SHKBP1-204ENST00000594862 NDOR1Q9UHB4 597 aa17.04■□□□□ 0.32
SHKBP1-204ENST00000594862 TSR3Q9UJK0 312 aaKnown RBP17.04■□□□□ 0.32
SHKBP1-204ENST00000594862 TCFL5Q9UL49 500 aa17.04■□□□□ 0.32
SHKBP1-204ENST00000594862 CHMP2BQ9UQN3 213 aa17.04■□□□□ 0.32
SHKBP1-204ENST00000594862 MED16Q9Y2X0 877 aa17.04■□□□□ 0.32
SHKBP1-204ENST00000594862 TEX264Q9Y6I9 313 aa17.04■□□□□ 0.32
SHKBP1-204ENST00000594862 GFYI3L273 518 aa17.03■□□□□ 0.32
SHKBP1-204ENST00000594862 C8GP07360 202 aa17.03■□□□□ 0.32
SHKBP1-204ENST00000594862 GRIA3P42263 894 aa17.03■□□□□ 0.32
SHKBP1-204ENST00000594862 PNLIPRP1P54315 467 aa17.03■□□□□ 0.32
SHKBP1-204ENST00000594862 ABATP80404 500 aa17.03■□□□□ 0.32
SHKBP1-204ENST00000594862 CUL1Q13616 776 aa17.03■□□□□ 0.32
SHKBP1-204ENST00000594862 FAM214AQ32MH5 1076 aa17.03■□□□□ 0.32
SHKBP1-204ENST00000594862 PTCHD3Q3KNS1 767 aa17.03■□□□□ 0.32
SHKBP1-204ENST00000594862 STEAP4Q687X5 459 aa17.03■□□□□ 0.32
SHKBP1-204ENST00000594862 CPNE9Q8IYJ1 553 aa17.03■□□□□ 0.32
SHKBP1-204ENST00000594862 ZNF655Q8N720 491 aaPredicted RBP17.03■□□□□ 0.32
SHKBP1-204ENST00000594862 CFAP36Q96G28 342 aa17.03■□□□□ 0.32
SHKBP1-204ENST00000594862 GBP5Q96PP8 586 aa17.03■□□□□ 0.32
SHKBP1-204ENST00000594862 MIPEPQ99797 713 aa17.03■□□□□ 0.32
SHKBP1-204ENST00000594862 SPRTNQ9H040 489 aaPredicted RBP17.03■□□□□ 0.32
SHKBP1-204ENST00000594862 MYO18BQ8IUG5 2567 aa17.03■□□□□ 0.32
SHKBP1-204ENST00000594862 SNRNP200O75643 2136 aaKnown RBP17.02■□□□□ 0.32
SHKBP1-204ENST00000594862 A0A1B0GX78 115 aa17.02■□□□□ 0.32
SHKBP1-204ENST00000594862 PABPN1LA6NDY0 278 aaKnown RBP17.02■□□□□ 0.32
SHKBP1-204ENST00000594862 BANF1O75531 89 aa17.02■□□□□ 0.32
SHKBP1-204ENST00000594862 IGHEP01854 428 aa17.02■□□□□ 0.32
SHKBP1-204ENST00000594862 CARSP49589 748 aaKnown RBP17.02■□□□□ 0.32
SHKBP1-204ENST00000594862 RPS18P62269 152 aaKnown RBP17.02■□□□□ 0.32
SHKBP1-204ENST00000594862 CBLBQ13191 982 aa17.02■□□□□ 0.32
SHKBP1-204ENST00000594862 LACTB2Q53H82 288 aaPredicted RBP17.02■□□□□ 0.32
SHKBP1-204ENST00000594862 FCRL6Q6DN72 434 aa17.02■□□□□ 0.32
SHKBP1-204ENST00000594862 MYO1HQ8N1T3 1032 aa17.02■□□□□ 0.32
SHKBP1-204ENST00000594862 SPATA4Q8NEY3 305 aa17.02■□□□□ 0.32
SHKBP1-204ENST00000594862 FKBP10Q96AY3 582 aa17.02■□□□□ 0.32
SHKBP1-204ENST00000594862 ZNF285Q96NJ3 590 aa17.02■□□□□ 0.32
SHKBP1-204ENST00000594862 RUFY1Q96T51 708 aa17.02■□□□□ 0.32
SHKBP1-204ENST00000594862 PKP4Q99569 1192 aa17.02■□□□□ 0.32
SHKBP1-204ENST00000594862 SLC30A3Q99726 388 aa17.02■□□□□ 0.32
SHKBP1-204ENST00000594862 MRPS30Q9NP92 439 aaKnown RBP17.02■□□□□ 0.32
SHKBP1-204ENST00000594862 NSMCE4AQ9NXX6 385 aa17.02■□□□□ 0.32
SHKBP1-204ENST00000594862 ZFATQ9P243 1243 aa17.02■□□□□ 0.32
SHKBP1-204ENST00000594862 IFT80Q9P2H3 777 aaPredicted RBP17.02■□□□□ 0.32
SHKBP1-204ENST00000594862 G3BP2Q9UN86 482 aaKnown RBP17.02■□□□□ 0.32
SHKBP1-204ENST00000594862 A0A1W2PPV9 198 aa17.01■□□□□ 0.31
SHKBP1-204ENST00000594862 E7ESA3 106 aa17.01■□□□□ 0.31
SHKBP1-204ENST00000594862 SLC16A5O15375 505 aa17.01■□□□□ 0.31
SHKBP1-204ENST00000594862 HCRTR1O43613 425 aa17.01■□□□□ 0.31
SHKBP1-204ENST00000594862 SLC28A2O43868 658 aa17.01■□□□□ 0.31
SHKBP1-204ENST00000594862 SLC16A8O95907 504 aa17.01■□□□□ 0.31
SHKBP1-204ENST00000594862 SYF2O95926 243 aaKnown RBP17.01■□□□□ 0.31
SHKBP1-204ENST00000594862 CAPN1P07384 714 aa17.01■□□□□ 0.31
SHKBP1-204ENST00000594862 FURINP09958 794 aa17.01■□□□□ 0.31
SHKBP1-204ENST00000594862 MCM3P25205 808 aa17.01■□□□□ 0.31
SHKBP1-204ENST00000594862 RRADP55042 308 aa17.01■□□□□ 0.31
SHKBP1-204ENST00000594862 RELAQ04206 551 aa17.01■□□□□ 0.31
SHKBP1-204ENST00000594862 IL10RAQ13651 578 aa17.01■□□□□ 0.31
SHKBP1-204ENST00000594862 NKAIN1Q4KMZ8 207 aa17.01■□□□□ 0.31
SHKBP1-204ENST00000594862 TEDDM1Q5T9Z0 273 aa17.01■□□□□ 0.31
SHKBP1-204ENST00000594862 FAM45BPQ6NSW5 357 aa17.01■□□□□ 0.31
SHKBP1-204ENST00000594862 ATG14Q6ZNE5 492 aa17.01■□□□□ 0.31
SHKBP1-204ENST00000594862 UBE2R2Q712K3 238 aaPredicted RBP17.01■□□□□ 0.31
SHKBP1-204ENST00000594862 RNF44Q7L0R7 432 aa17.01■□□□□ 0.31
SHKBP1-204ENST00000594862 FAM20CQ8IXL6 584 aa17.01■□□□□ 0.31
SHKBP1-204ENST00000594862 FAM45AQ8TCE6 357 aa17.01■□□□□ 0.31
SHKBP1-204ENST00000594862 MCOLN3Q8TDD5 553 aa17.01■□□□□ 0.31
SHKBP1-204ENST00000594862 ADAMTS17Q8TE56 1095 aa17.01■□□□□ 0.31
SHKBP1-204ENST00000594862 NDNQ99608 321 aa17.01■□□□□ 0.31
SHKBP1-204ENST00000594862 ZFYVE21Q9BQ24 234 aa17.01■□□□□ 0.31
SHKBP1-204ENST00000594862 ERP44Q9BS26 406 aa17.01■□□□□ 0.31
SHKBP1-204ENST00000594862 DPH7Q9BTV6 452 aa17.01■□□□□ 0.31
SHKBP1-204ENST00000594862 TRIM31Q9BZY9 425 aa17.01■□□□□ 0.31
SHKBP1-204ENST00000594862 PCBD2Q9H0N5 130 aa17.01■□□□□ 0.31
SHKBP1-204ENST00000594862 WHRNQ9P202 907 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms