RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 YOD1Q5VVQ6 348 aaPredicted RBP11.89□□□□□ -0.51
SS18-225ENST00000585121 TEX19Q8NA77 164 aa11.89□□□□□ -0.51
SS18-225ENST00000585121 IP6K3Q96PC2 410 aa11.89□□□□□ -0.51
SS18-225ENST00000585121 GBP5Q96PP8 586 aa11.89□□□□□ -0.51
SS18-225ENST00000585121 SELENOSQ9BQE4 189 aa11.89□□□□□ -0.51
SS18-225ENST00000585121 ING2Q9H160 280 aa11.89□□□□□ -0.51
SS18-225ENST00000585121 PPANQ9NQ55 473 aaKnown RBP11.89□□□□□ -0.51
SS18-225ENST00000585121 UTP6Q9NYH9 597 aaKnown RBP11.89□□□□□ -0.51
SS18-225ENST00000585121 DHCR7Q9UBM7 475 aaKnown RBP11.89□□□□□ -0.51
SS18-225ENST00000585121 TRMT6Q9UJA5 497 aaKnown RBP11.89□□□□□ -0.51
SS18-225ENST00000585121 TP53TG5Q9Y2B4 290 aa11.89□□□□□ -0.51
SS18-225ENST00000585121 DHRS7Q9Y394 339 aa11.89□□□□□ -0.51
SS18-225ENST00000585121 ARHGEF33A8MVX0 844 aa11.88□□□□□ -0.51
SS18-225ENST00000585121 H3BMH7 237 aa11.88□□□□□ -0.51
SS18-225ENST00000585121 CCDC188H7C350 402 aa11.88□□□□□ -0.51
SS18-225ENST00000585121 MYO1CO00159 1063 aa11.88□□□□□ -0.51
SS18-225ENST00000585121 NDC80O14777 642 aa11.88□□□□□ -0.51
SS18-225ENST00000585121 HCRTR1O43613 425 aa11.88□□□□□ -0.51
SS18-225ENST00000585121 PRICKLE3O43900 615 aaPredicted RBP11.88□□□□□ -0.51
SS18-225ENST00000585121 SRPX2O60687 465 aaPredicted RBP11.88□□□□□ -0.51
SS18-225ENST00000585121 HAUS5O94927 633 aa11.88□□□□□ -0.51
SS18-225ENST00000585121 SYF2O95926 243 aaKnown RBP11.88□□□□□ -0.51
SS18-225ENST00000585121 IGHEP01854 428 aa11.88□□□□□ -0.51
SS18-225ENST00000585121 FOLR3P41439 243 aa11.88□□□□□ -0.51
SS18-225ENST00000585121 SKIV2L2P42285 1042 aaKnown RBP11.88□□□□□ -0.51
SS18-225ENST00000585121 PTGIRP43119 386 aa11.88□□□□□ -0.51
SS18-225ENST00000585121 RGS4P49798 205 aa11.88□□□□□ -0.51
SS18-225ENST00000585121 CCL11P51671 97 aa11.88□□□□□ -0.51
SS18-225ENST00000585121 KCNC4Q03721 635 aa11.88□□□□□ -0.51
SS18-225ENST00000585121 KLRB1Q12918 225 aa11.88□□□□□ -0.51
SS18-225ENST00000585121 SSPNQ14714 243 aa11.88□□□□□ -0.51
SS18-225ENST00000585121 FAM214AQ32MH5 1076 aa11.88□□□□□ -0.51
SS18-225ENST00000585121 NKAIN1Q4KMZ8 207 aa11.88□□□□□ -0.51
SS18-225ENST00000585121 ZNF385CQ66K41 422 aaPredicted RBP11.88□□□□□ -0.51
SS18-225ENST00000585121 FCRL6Q6DN72 434 aa11.88□□□□□ -0.51
SS18-225ENST00000585121 LRRC8EQ6NSJ5 796 aa11.88□□□□□ -0.51
SS18-225ENST00000585121 TTLL10Q6ZVT0 673 aa11.88□□□□□ -0.51
SS18-225ENST00000585121 ASB18Q6ZVZ8 466 aa11.88□□□□□ -0.51
SS18-225ENST00000585121 CREG2Q8IUH2 290 aa11.88□□□□□ -0.51
SS18-225ENST00000585121 PALM2Q8IXS6 379 aa11.88□□□□□ -0.51
SS18-225ENST00000585121 AGGF1Q8N302 714 aaeCLIP11.88□□□□□ -0.51
SS18-225ENST00000585121 OR2L3Q8NG85 312 aa11.88□□□□□ -0.51
SS18-225ENST00000585121 GPR21Q99679 349 aa11.88□□□□□ -0.51
SS18-225ENST00000585121 AARSD1Q9BTE6 412 aaKnown RBP11.88□□□□□ -0.51
SS18-225ENST00000585121 ACAT2Q9BWD1 397 aa11.88□□□□□ -0.51
SS18-225ENST00000585121 MRPS30Q9NP92 439 aaKnown RBP11.88□□□□□ -0.51
SS18-225ENST00000585121 PTRH2Q9Y3E5 179 aaKnown RBP11.88□□□□□ -0.51
SS18-225ENST00000585121 KLK4Q9Y5K2 254 aa11.88□□□□□ -0.51
SS18-225ENST00000585121 A0A1B0GX78 115 aa11.87□□□□□ -0.51
SS18-225ENST00000585121 EIF3FO00303 357 aaPredicted RBP11.87□□□□□ -0.51
SS18-225ENST00000585121 PEX12O00623 359 aa11.87□□□□□ -0.51
SS18-225ENST00000585121 WISP1O95388 367 aa11.87□□□□□ -0.51
SS18-225ENST00000585121 ERVK-10P10266 1014 aa11.87□□□□□ -0.51
SS18-225ENST00000585121 PSMB5P28074 263 aa11.87□□□□□ -0.51
SS18-225ENST00000585121 OTX2P32243 289 aa11.87□□□□□ -0.51
SS18-225ENST00000585121 PGDP52209 483 aa11.87□□□□□ -0.51
SS18-225ENST00000585121 PNLIPRP1P54315 467 aa11.87□□□□□ -0.51
SS18-225ENST00000585121 ARL4CP56559 192 aa11.87□□□□□ -0.51
SS18-225ENST00000585121 VSX2P58304 361 aaPredicted RBP11.87□□□□□ -0.51
SS18-225ENST00000585121 MPP1Q00013 466 aa11.87□□□□□ -0.51
SS18-225ENST00000585121 CUL1Q13616 776 aa11.87□□□□□ -0.51
SS18-225ENST00000585121 FASTKQ14296 549 aaKnown RBP11.87□□□□□ -0.51
SS18-225ENST00000585121 EEF1AKMT2Q5JPI9 291 aaKnown RBP11.87□□□□□ -0.51
SS18-225ENST00000585121 ZNF549Q6P9A3 640 aa11.87□□□□□ -0.51
SS18-225ENST00000585121 KIAA0408Q6ZU52 694 aa11.87□□□□□ -0.51
SS18-225ENST00000585121 MED25Q71SY5 747 aa11.87□□□□□ -0.51
SS18-225ENST00000585121 TMEM102Q8N9M5 508 aaPredicted RBP11.87□□□□□ -0.51
SS18-225ENST00000585121 FBXO15Q8NCQ5 510 aaPredicted RBP11.87□□□□□ -0.51
SS18-225ENST00000585121 C2CD4AQ8NCU7 369 aaPredicted RBP11.87□□□□□ -0.51
SS18-225ENST00000585121 OR2A1Q8NGT9 310 aa11.87□□□□□ -0.51
SS18-225ENST00000585121 ADAMTS17Q8TE56 1095 aa11.87□□□□□ -0.51
SS18-225ENST00000585121 ASB11Q8WXH4 323 aa11.87□□□□□ -0.51
SS18-225ENST00000585121 LRRC39Q96DD0 335 aa11.87□□□□□ -0.51
SS18-225ENST00000585121 PKP4Q99569 1192 aa11.87□□□□□ -0.51
SS18-225ENST00000585121 SLC30A3Q99726 388 aa11.87□□□□□ -0.51
SS18-225ENST00000585121 SLC25A23Q9BV35 468 aa11.87□□□□□ -0.51
SS18-225ENST00000585121 TRIM4Q9C037 500 aa11.87□□□□□ -0.51
SS18-225ENST00000585121 RRAGDQ9NQL2 400 aaPredicted RBP11.87□□□□□ -0.51
SS18-225ENST00000585121 CUTCQ9NTM9 273 aa11.87□□□□□ -0.51
SS18-225ENST00000585121 TAS2R13Q9NYV9 303 aa11.87□□□□□ -0.51
SS18-225ENST00000585121 ANKMY1Q9P2S6 941 aa11.87□□□□□ -0.51
SS18-225ENST00000585121 A0A0J9YVX5 310 aa11.86□□□□□ -0.51
SS18-225ENST00000585121 A0A1W2PPV9 198 aa11.86□□□□□ -0.51
SS18-225ENST00000585121 KRT87PA6NCN2 255 aa11.86□□□□□ -0.51
SS18-225ENST00000585121 PABPN1LA6NDY0 278 aaKnown RBP11.86□□□□□ -0.51
SS18-225ENST00000585121 KIF2AO00139 706 aaPredicted RBP11.86□□□□□ -0.51
SS18-225ENST00000585121 DSCR3O14972 297 aa11.86□□□□□ -0.51
SS18-225ENST00000585121 DNAJB5O75953 348 aa11.86□□□□□ -0.51
SS18-225ENST00000585121 CTSBP07858 339 aa11.86□□□□□ -0.51
SS18-225ENST00000585121 F7P08709 466 aaPredicted RBP11.86□□□□□ -0.51
SS18-225ENST00000585121 ERGP11308 486 aa11.86□□□□□ -0.51
SS18-225ENST00000585121 CARSP49589 748 aaKnown RBP11.86□□□□□ -0.51
SS18-225ENST00000585121 CSRP3P50461 194 aa11.86□□□□□ -0.51
SS18-225ENST00000585121 CHAF1BQ13112 559 aa11.86□□□□□ -0.51
SS18-225ENST00000585121 SLC9A5Q14940 896 aa11.86□□□□□ -0.51
SS18-225ENST00000585121 HIF1AQ16665 826 aa11.86□□□□□ -0.51
SS18-225ENST00000585121 WASHC2DQ5SRD0 308 aa11.86□□□□□ -0.51
SS18-225ENST00000585121 THEMIS2Q5TEJ8 643 aa11.86□□□□□ -0.51
SS18-225ENST00000585121 UBE2R2Q712K3 238 aaPredicted RBP11.86□□□□□ -0.51
SS18-225ENST00000585121 OR2Y1Q8NGV0 311 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms