RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 FASTKQ14296 549 aaKnown RBP19.62■□□□□ 0.73
SHMT1-209ENST00000582653 GBX1Q14549 363 aa19.62■□□□□ 0.73
SHMT1-209ENST00000582653 MYBPC3Q14896 1274 aa19.62■□□□□ 0.73
SHMT1-209ENST00000582653 PLEKHN1Q494U1 663 aaPredicted RBP19.62■□□□□ 0.73
SHMT1-209ENST00000582653 ANKRD20A4Q4UJ75 823 aa19.62■□□□□ 0.73
SHMT1-209ENST00000582653 ACSBG2Q5FVE4 666 aa19.62■□□□□ 0.73
SHMT1-209ENST00000582653 ZC3H12BQ5HYM0 836 aaKnown RBP19.62■□□□□ 0.73
SHMT1-209ENST00000582653 RNF187Q5TA31 235 aaPredicted RBP19.62■□□□□ 0.73
SHMT1-209ENST00000582653 YOD1Q5VVQ6 348 aaPredicted RBP19.62■□□□□ 0.73
SHMT1-209ENST00000582653 CCDC137Q6PK04 289 aaKnown RBP19.62■□□□□ 0.73
SHMT1-209ENST00000582653 CILP2Q8IUL8 1156 aa19.62■□□□□ 0.73
SHMT1-209ENST00000582653 ZNF669Q96BR6 464 aaPredicted RBP19.62■□□□□ 0.73
SHMT1-209ENST00000582653 FOPNLQ96NB1 174 aa19.62■□□□□ 0.73
SHMT1-209ENST00000582653 RAB11FIP5Q9BXF6 653 aa19.62■□□□□ 0.73
SHMT1-209ENST00000582653 ZNF552Q9H707 407 aaPredicted RBP19.62■□□□□ 0.73
SHMT1-209ENST00000582653 SAMD15Q9P1V8 674 aa19.62■□□□□ 0.73
SHMT1-209ENST00000582653 NEU2Q9Y3R4 380 aa19.62■□□□□ 0.73
SHMT1-209ENST00000582653 LRRK2Q5S007 2527 aa19.62■□□□□ 0.73
SHMT1-209ENST00000582653 A0A1W2PPV9 198 aa19.61■□□□□ 0.73
SHMT1-209ENST00000582653 SDR42E2A6NKP2 422 aa19.61■□□□□ 0.73
SHMT1-209ENST00000582653 TCP11X1B4DZS4 312 aa19.61■□□□□ 0.73
SHMT1-209ENST00000582653 TARM1B6A8C7 271 aa19.61■□□□□ 0.73
SHMT1-209ENST00000582653 PFDN6O15212 129 aa19.61■□□□□ 0.73
SHMT1-209ENST00000582653 CTSVO60911 334 aa19.61■□□□□ 0.73
SHMT1-209ENST00000582653 AGFG2O95081 481 aa19.61■□□□□ 0.73
SHMT1-209ENST00000582653 FKBP9O95302 570 aa19.61■□□□□ 0.73
SHMT1-209ENST00000582653 MATN4O95460 622 aa19.61■□□□□ 0.73
SHMT1-209ENST00000582653 ALBP02768 609 aa19.61■□□□□ 0.73
SHMT1-209ENST00000582653 UMODP07911 640 aa19.61■□□□□ 0.73
SHMT1-209ENST00000582653 PKMP14618 531 aaKnown RBP19.61■□□□□ 0.73
SHMT1-209ENST00000582653 PAMP19021 973 aa19.61■□□□□ 0.73
SHMT1-209ENST00000582653 OGNP20774 298 aaKnown RBP19.61■□□□□ 0.73
SHMT1-209ENST00000582653 CCNFP41002 786 aa19.61■□□□□ 0.73
SHMT1-209ENST00000582653 ADARP55265 1226 aaKnown RBP19.61■□□□□ 0.73
SHMT1-209ENST00000582653 CYP1B1Q16678 543 aa19.61■□□□□ 0.73
SHMT1-209ENST00000582653 TCTE1Q5JU00 501 aa19.61■□□□□ 0.73
SHMT1-209ENST00000582653 OVCH1Q7RTY7 1134 aa19.61■□□□□ 0.73
SHMT1-209ENST00000582653 PPP1R32Q7Z5V6 425 aa19.61■□□□□ 0.73
SHMT1-209ENST00000582653 AGGF1Q8N302 714 aaeCLIP19.61■□□□□ 0.73
SHMT1-209ENST00000582653 RAB42Q8N4Z0 105 aa19.61■□□□□ 0.73
SHMT1-209ENST00000582653 DTWD1Q8N5C7 304 aa19.61■□□□□ 0.73
SHMT1-209ENST00000582653 OR2A1Q8NGT9 310 aa19.61■□□□□ 0.73
SHMT1-209ENST00000582653 HMGCLL1Q8TB92 370 aa19.61■□□□□ 0.73
SHMT1-209ENST00000582653 COG1Q8WTW3 980 aa19.61■□□□□ 0.73
SHMT1-209ENST00000582653 ZDHHC19Q8WVZ1 309 aaPredicted RBP19.61■□□□□ 0.73
SHMT1-209ENST00000582653 SERPINB12Q96P63 405 aa19.61■□□□□ 0.73
SHMT1-209ENST00000582653 SLC30A3Q99726 388 aa19.61■□□□□ 0.73
SHMT1-209ENST00000582653 ATP13A2Q9NQ11 1180 aa19.61■□□□□ 0.73
SHMT1-209ENST00000582653 LUZP4Q9P127 313 aa19.61■□□□□ 0.73
SHMT1-209ENST00000582653 MRFAP1Q9Y605 127 aa19.61■□□□□ 0.73
SHMT1-209ENST00000582653 CCDC88CQ9P219 2028 aa19.6■□□□□ 0.73
SHMT1-209ENST00000582653 NBPF19A0A087WUL8 3843 aa19.6■□□□□ 0.73
SHMT1-209ENST00000582653 FAM237BA0A1B0GVD1 139 aa19.6■□□□□ 0.73
SHMT1-209ENST00000582653 H3BMM5 538 aa19.6■□□□□ 0.73
SHMT1-209ENST00000582653 AGPSO00116 658 aa19.6■□□□□ 0.73
SHMT1-209ENST00000582653 SRPX2O60687 465 aaPredicted RBP19.6■□□□□ 0.73
SHMT1-209ENST00000582653 IPO13O94829 963 aaKnown RBP19.6■□□□□ 0.73
SHMT1-209ENST00000582653 ALPPP05187 535 aa19.6■□□□□ 0.73
SHMT1-209ENST00000582653 MLNP12872 115 aa19.6■□□□□ 0.73
SHMT1-209ENST00000582653 CTBP1Q13363 440 aa19.6■□□□□ 0.73
SHMT1-209ENST00000582653 KLHL38Q2WGJ6 581 aa19.6■□□□□ 0.73
SHMT1-209ENST00000582653 EEF1AKMT2Q5JPI9 291 aaKnown RBP19.6■□□□□ 0.73
SHMT1-209ENST00000582653 ZNF470Q6ECI4 717 aa19.6■□□□□ 0.73
SHMT1-209ENST00000582653 FRMPD2BQ6IN97 320 aa19.6■□□□□ 0.73
SHMT1-209ENST00000582653 DENND6AQ8IWF6 608 aa19.6■□□□□ 0.73
SHMT1-209ENST00000582653 REXO1L1PQ8IX06 675 aa19.6■□□□□ 0.73
SHMT1-209ENST00000582653 SLC35F6Q8N357 371 aa19.6■□□□□ 0.73
SHMT1-209ENST00000582653 MCUQ8NE86 351 aa19.6■□□□□ 0.73
SHMT1-209ENST00000582653 OR2L3Q8NG85 312 aa19.6■□□□□ 0.73
SHMT1-209ENST00000582653 MAGEC3Q8TD91 643 aa19.6■□□□□ 0.73
SHMT1-209ENST00000582653 ZNF285Q96NJ3 590 aa19.6■□□□□ 0.73
SHMT1-209ENST00000582653 SELENOSQ9BQE4 189 aa19.6■□□□□ 0.73
SHMT1-209ENST00000582653 ACAT2Q9BWD1 397 aa19.6■□□□□ 0.73
SHMT1-209ENST00000582653 FBXO6Q9NRD1 293 aaPredicted RBP19.6■□□□□ 0.73
SHMT1-209ENST00000582653 CUTCQ9NTM9 273 aa19.6■□□□□ 0.73
SHMT1-209ENST00000582653 B3GNT3Q9Y2A9 372 aa19.6■□□□□ 0.73
SHMT1-209ENST00000582653 ZCWPW2A0A1B0GU75 182 aa19.59■□□□□ 0.73
SHMT1-209ENST00000582653 A0A1B0GX78 115 aa19.59■□□□□ 0.73
SHMT1-209ENST00000582653 MAGEB16A2A368 324 aa19.59■□□□□ 0.73
SHMT1-209ENST00000582653 ARHGEF33A8MVX0 844 aa19.59■□□□□ 0.73
SHMT1-209ENST00000582653 E5RI56 91 aa19.59■□□□□ 0.73
SHMT1-209ENST00000582653 MMP11P24347 488 aa19.59■□□□□ 0.73
SHMT1-209ENST00000582653 VSX2P58304 361 aaPredicted RBP19.59■□□□□ 0.73
SHMT1-209ENST00000582653 GRM7Q14831 915 aa19.59■□□□□ 0.73
SHMT1-209ENST00000582653 CYP2A13Q16696 494 aa19.59■□□□□ 0.73
SHMT1-209ENST00000582653 FAM214AQ32MH5 1076 aa19.59■□□□□ 0.73
SHMT1-209ENST00000582653 PRR30Q53SZ7 412 aaPredicted RBP19.59■□□□□ 0.73
SHMT1-209ENST00000582653 WASHC2DQ5SRD0 308 aa19.59■□□□□ 0.73
SHMT1-209ENST00000582653 SUSD1Q6UWL2 747 aa19.59■□□□□ 0.73
SHMT1-209ENST00000582653 METTL27Q8N6F8 245 aaPredicted RBP19.59■□□□□ 0.73
SHMT1-209ENST00000582653 FKBP10Q96AY3 582 aa19.59■□□□□ 0.73
SHMT1-209ENST00000582653 SLC29A3Q9BZD2 475 aa19.59■□□□□ 0.73
SHMT1-209ENST00000582653 SLC26A1Q9H2B4 701 aa19.59■□□□□ 0.73
SHMT1-209ENST00000582653 WDR54Q9H977 334 aa19.59■□□□□ 0.73
SHMT1-209ENST00000582653 CUEDC1Q9NWM3 386 aaPredicted RBP19.59■□□□□ 0.73
SHMT1-209ENST00000582653 STOX2Q9P2F5 926 aaPredicted RBP19.59■□□□□ 0.73
SHMT1-209ENST00000582653 KLK4Q9Y5K2 254 aa19.59■□□□□ 0.73
SHMT1-209ENST00000582653 LOC105369274A0A096LPK9 316 aa19.58■□□□□ 0.72
SHMT1-209ENST00000582653 LOC102723532A0A0G2JNH3 316 aa19.58■□□□□ 0.72
SHMT1-209ENST00000582653 A0A0J9YVX5 310 aa19.58■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms