RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 RBMXL3Q8N7X1 1067 aaKnown RBP13.9□□□□□ -0.18
SMARCE1-216ENST00000580419 OR2L3Q8NG85 312 aa13.9□□□□□ -0.18
SMARCE1-216ENST00000580419 COL26A1Q96A83 441 aa13.9□□□□□ -0.18
SMARCE1-216ENST00000580419 MFSD3Q96ES6 412 aa13.9□□□□□ -0.18
SMARCE1-216ENST00000580419 PBKQ96KB5 322 aa13.9□□□□□ -0.18
SMARCE1-216ENST00000580419 PSMG3-AS1Q96PY0 264 aa13.9□□□□□ -0.18
SMARCE1-216ENST00000580419 BARD1Q99728 777 aaKnown RBP13.9□□□□□ -0.18
SMARCE1-216ENST00000580419 ATP13A2Q9NQ11 1180 aa13.9□□□□□ -0.18
SMARCE1-216ENST00000580419 LZTFL1Q9NQ48 299 aa13.9□□□□□ -0.18
SMARCE1-216ENST00000580419 SEMA3GQ9NS98 782 aa13.9□□□□□ -0.18
SMARCE1-216ENST00000580419 SLC22A11Q9NSA0 550 aa13.9□□□□□ -0.18
SMARCE1-216ENST00000580419 P4HTMQ9NXG6 502 aa13.9□□□□□ -0.18
SMARCE1-216ENST00000580419 UTP6Q9NYH9 597 aaKnown RBP13.9□□□□□ -0.18
SMARCE1-216ENST00000580419 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.9□□□□□ -0.18
SMARCE1-216ENST00000580419 FAM169AQ9Y6X4 670 aa13.9□□□□□ -0.18
SMARCE1-216ENST00000580419 PCSK5Q92824 1860 aa13.9□□□□□ -0.18
SMARCE1-216ENST00000580419 IGLV3-12A0A075B6K2 115 aa13.89□□□□□ -0.19
SMARCE1-216ENST00000580419 A0A1W2PPV9 198 aa13.89□□□□□ -0.19
SMARCE1-216ENST00000580419 A0A1W2PQ72 361 aa13.89□□□□□ -0.19
SMARCE1-216ENST00000580419 SDR42E2A6NKP2 422 aa13.89□□□□□ -0.19
SMARCE1-216ENST00000580419 VSTM2BA6NLU5 285 aa13.89□□□□□ -0.19
SMARCE1-216ENST00000580419 CES2O00748 559 aa13.89□□□□□ -0.19
SMARCE1-216ENST00000580419 CEP104O60308 925 aa13.89□□□□□ -0.19
SMARCE1-216ENST00000580419 UMODP07911 640 aa13.89□□□□□ -0.19
SMARCE1-216ENST00000580419 ENO3P13929 434 aaPredicted RBP13.89□□□□□ -0.19
SMARCE1-216ENST00000580419 MGAT1P26572 445 aa13.89□□□□□ -0.19
SMARCE1-216ENST00000580419 CRADDP78560 199 aa13.89□□□□□ -0.19
SMARCE1-216ENST00000580419 CCZ1BP86790 482 aa13.89□□□□□ -0.19
SMARCE1-216ENST00000580419 CCZ1P86791 482 aaPredicted RBP13.89□□□□□ -0.19
SMARCE1-216ENST00000580419 CHAF1BQ13112 559 aa13.89□□□□□ -0.19
SMARCE1-216ENST00000580419 DEFB110Q30KQ9 67 aa13.89□□□□□ -0.19
SMARCE1-216ENST00000580419 ANKRD20A4Q4UJ75 823 aa13.89□□□□□ -0.19
SMARCE1-216ENST00000580419 SLC6A19Q695T7 634 aa13.89□□□□□ -0.19
SMARCE1-216ENST00000580419 NEPROQ6NW34 567 aa13.89□□□□□ -0.19
SMARCE1-216ENST00000580419 IGFL2Q6UWQ7 119 aa13.89□□□□□ -0.19
SMARCE1-216ENST00000580419 PPP1R32Q7Z5V6 425 aa13.89□□□□□ -0.19
SMARCE1-216ENST00000580419 KRT222Q8N1A0 295 aa13.89□□□□□ -0.19
SMARCE1-216ENST00000580419 GALNT16Q8N428 558 aa13.89□□□□□ -0.19
SMARCE1-216ENST00000580419 TTC29Q8NA56 475 aaPredicted RBP13.89□□□□□ -0.19
SMARCE1-216ENST00000580419 Q8NA96 180 aa13.89□□□□□ -0.19
SMARCE1-216ENST00000580419 KCNJ9Q92806 393 aa13.89□□□□□ -0.19
SMARCE1-216ENST00000580419 SELENOSQ9BQE4 189 aa13.89□□□□□ -0.19
SMARCE1-216ENST00000580419 SLC29A3Q9BZD2 475 aa13.89□□□□□ -0.19
SMARCE1-216ENST00000580419 CUTCQ9NTM9 273 aa13.89□□□□□ -0.19
SMARCE1-216ENST00000580419 SYBUQ9NX95 663 aa13.89□□□□□ -0.19
SMARCE1-216ENST00000580419 DHCR7Q9UBM7 475 aaKnown RBP13.89□□□□□ -0.19
SMARCE1-216ENST00000580419 PLAGL1Q9UM63 463 aa13.89□□□□□ -0.19
SMARCE1-216ENST00000580419 B3GNT3Q9Y2A9 372 aa13.89□□□□□ -0.19
SMARCE1-216ENST00000580419 NEU2Q9Y3R4 380 aa13.89□□□□□ -0.19
SMARCE1-216ENST00000580419 ZNF185O15231 689 aa13.88□□□□□ -0.19
SMARCE1-216ENST00000580419 CNOT3O75175 753 aaKnown RBP13.88□□□□□ -0.19
SMARCE1-216ENST00000580419 CYC1P08574 325 aa13.88□□□□□ -0.19
SMARCE1-216ENST00000580419 PKMP14618 531 aaKnown RBP13.88□□□□□ -0.19
SMARCE1-216ENST00000580419 OTX2P32243 289 aa13.88□□□□□ -0.19
SMARCE1-216ENST00000580419 KCNJ1P48048 391 aa13.88□□□□□ -0.19
SMARCE1-216ENST00000580419 CARSP49589 748 aaKnown RBP13.88□□□□□ -0.19
SMARCE1-216ENST00000580419 CSE1LP55060 971 aaKnown RBP13.88□□□□□ -0.19
SMARCE1-216ENST00000580419 EIF3BP55884 814 aaKnown RBP13.88□□□□□ -0.19
SMARCE1-216ENST00000580419 INPP5JQ15735 1006 aaPredicted RBP13.88□□□□□ -0.19
SMARCE1-216ENST00000580419 NKG7Q16617 165 aa13.88□□□□□ -0.19
SMARCE1-216ENST00000580419 TTLL9Q3SXZ7 439 aa13.88□□□□□ -0.19
SMARCE1-216ENST00000580419 NADK2Q4G0N4 442 aa13.88□□□□□ -0.19
SMARCE1-216ENST00000580419 GARNL3Q5VVW2 1013 aa13.88□□□□□ -0.19
SMARCE1-216ENST00000580419 LDB1Q86U70 411 aaPredicted RBP13.88□□□□□ -0.19
SMARCE1-216ENST00000580419 CAND1Q86VP6 1230 aaKnown RBP13.88□□□□□ -0.19
SMARCE1-216ENST00000580419 OR9A1PQ8NGU1 263 aa13.88□□□□□ -0.19
SMARCE1-216ENST00000580419 CFAP61Q8NHU2 1237 aa13.88□□□□□ -0.19
SMARCE1-216ENST00000580419 CALML6Q8TD86 181 aa13.88□□□□□ -0.19
SMARCE1-216ENST00000580419 SMPDL3AQ92484 453 aa13.88□□□□□ -0.19
SMARCE1-216ENST00000580419 SPSB2Q99619 263 aa13.88□□□□□ -0.19
SMARCE1-216ENST00000580419 ZNF552Q9H707 407 aaPredicted RBP13.88□□□□□ -0.19
SMARCE1-216ENST00000580419 SLAMF7Q9NQ25 335 aa13.88□□□□□ -0.19
SMARCE1-216ENST00000580419 SAMD15Q9P1V8 674 aa13.88□□□□□ -0.19
SMARCE1-216ENST00000580419 PPP2R2CQ9Y2T4 447 aa13.88□□□□□ -0.19
SMARCE1-216ENST00000580419 CENPEQ02224 2701 aa13.88□□□□□ -0.19
SMARCE1-216ENST00000580419 GFYI3L273 518 aa13.87□□□□□ -0.19
SMARCE1-216ENST00000580419 TXNDC9O14530 226 aa13.87□□□□□ -0.19
SMARCE1-216ENST00000580419 PRPF4O43172 522 aaKnown RBP eCLIP13.87□□□□□ -0.19
SMARCE1-216ENST00000580419 CTSVO60911 334 aa13.87□□□□□ -0.19
SMARCE1-216ENST00000580419 USP1O94782 785 aa13.87□□□□□ -0.19
SMARCE1-216ENST00000580419 CCNDBP1O95273 360 aa13.87□□□□□ -0.19
SMARCE1-216ENST00000580419 CATP04040 527 aaKnown RBP13.87□□□□□ -0.19
SMARCE1-216ENST00000580419 CTSBP07858 339 aa13.87□□□□□ -0.19
SMARCE1-216ENST00000580419 HRH2P25021 359 aa13.87□□□□□ -0.19
SMARCE1-216ENST00000580419 CMPK1P30085 196 aa13.87□□□□□ -0.19
SMARCE1-216ENST00000580419 ABATP80404 500 aa13.87□□□□□ -0.19
SMARCE1-216ENST00000580419 GPS1Q13098 491 aa13.87□□□□□ -0.19
SMARCE1-216ENST00000580419 MUM1Q2TAK8 710 aa13.87□□□□□ -0.19
SMARCE1-216ENST00000580419 PRTGQ2VWP7 1150 aa13.87□□□□□ -0.19
SMARCE1-216ENST00000580419 CRB2Q5IJ48 1285 aa13.87□□□□□ -0.19
SMARCE1-216ENST00000580419 C1orf189Q5VU69 101 aa13.87□□□□□ -0.19
SMARCE1-216ENST00000580419 LRRC8EQ6NSJ5 796 aa13.87□□□□□ -0.19
SMARCE1-216ENST00000580419 Q6ZS92 163 aa13.87□□□□□ -0.19
SMARCE1-216ENST00000580419 TTLL10Q6ZVT0 673 aa13.87□□□□□ -0.19
SMARCE1-216ENST00000580419 CENPUQ71F23 418 aa13.87□□□□□ -0.19
SMARCE1-216ENST00000580419 COX15Q7KZN9 410 aa13.87□□□□□ -0.19
SMARCE1-216ENST00000580419 IQCKQ8N0W5 287 aa13.87□□□□□ -0.19
SMARCE1-216ENST00000580419 IL17FQ96PD4 163 aa13.87□□□□□ -0.19
SMARCE1-216ENST00000580419 ZFYVE21Q9BQ24 234 aa13.87□□□□□ -0.19
SMARCE1-216ENST00000580419 CDC14AQ9UNH5 594 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms