RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 TAC3Q9UHF0 121 aa24.27■■□□□ 1.48
SHMT1-207ENST00000580002 BTRCQ9Y297 605 aa24.27■■□□□ 1.48
SHMT1-207ENST00000580002 BTN3A3O00478 584 aa24.26■■□□□ 1.47
SHMT1-207ENST00000580002 FFAR3O14843 346 aa24.26■■□□□ 1.47
SHMT1-207ENST00000580002 GPR42O15529 346 aa24.26■■□□□ 1.47
SHMT1-207ENST00000580002 CAPN1P07384 714 aa24.26■■□□□ 1.47
SHMT1-207ENST00000580002 ANXA6P08133 673 aa24.26■■□□□ 1.47
SHMT1-207ENST00000580002 FGF4P08620 206 aa24.26■■□□□ 1.47
SHMT1-207ENST00000580002 VARSP26640 1264 aaKnown RBP24.26■■□□□ 1.47
SHMT1-207ENST00000580002 RXRGP48443 463 aa24.26■■□□□ 1.47
SHMT1-207ENST00000580002 BTKQ06187 659 aa24.26■■□□□ 1.47
SHMT1-207ENST00000580002 THEMIS2Q5TEJ8 643 aa24.26■■□□□ 1.47
SHMT1-207ENST00000580002 KANK2Q63ZY3 851 aa24.26■■□□□ 1.47
SHMT1-207ENST00000580002 METTL2BQ6P1Q9 378 aaKnown RBP24.26■■□□□ 1.47
SHMT1-207ENST00000580002 CLYBLQ8N0X4 340 aa24.26■■□□□ 1.47
SHMT1-207ENST00000580002 ARL14Q8N4G2 192 aa24.26■■□□□ 1.47
SHMT1-207ENST00000580002 GRAMD1AQ96CP6 724 aa24.26■■□□□ 1.47
SHMT1-207ENST00000580002 NTMT1Q9BV86 223 aa24.26■■□□□ 1.47
SHMT1-207ENST00000580002 KIR2DS5A0A0G2JLQ3 304 aa24.26■■□□□ 1.47
SHMT1-207ENST00000580002 A0A0G2JNG1 304 aa24.26■■□□□ 1.47
SHMT1-207ENST00000580002 GOLGA8QA0A0J9YX86 632 aa24.26■■□□□ 1.47
SHMT1-207ENST00000580002 GOLGA8OA6NCC3 632 aa24.26■■□□□ 1.47
SHMT1-207ENST00000580002 GOLGA8NF8WBI6 632 aa24.26■■□□□ 1.47
SHMT1-207ENST00000580002 KIR2DS3K7RE56 304 aa24.26■■□□□ 1.47
SHMT1-207ENST00000580002 RRP9O43818 475 aaKnown RBP24.26■■□□□ 1.47
SHMT1-207ENST00000580002 OTCP00480 354 aa24.26■■□□□ 1.47
SHMT1-207ENST00000580002 IDH3AP50213 366 aa24.26■■□□□ 1.47
SHMT1-207ENST00000580002 CHIT1Q13231 466 aa24.26■■□□□ 1.47
SHMT1-207ENST00000580002 KIR2DS5Q14953 304 aa24.26■■□□□ 1.47
SHMT1-207ENST00000580002 ARHGAP19Q14CB8 494 aa24.26■■□□□ 1.47
SHMT1-207ENST00000580002 ZNF423Q2M1K9 1284 aa24.26■■□□□ 1.47
SHMT1-207ENST00000580002 FOXR1Q6PIV2 292 aa24.26■■□□□ 1.47
SHMT1-207ENST00000580002 OR2L8Q8NGY9 312 aa24.26■■□□□ 1.47
SHMT1-207ENST00000580002 C3orf30Q96M34 536 aa24.26■■□□□ 1.47
SHMT1-207ENST00000580002 HBEGFQ99075 208 aa24.26■■□□□ 1.47
SHMT1-207ENST00000580002 TBC1D10AQ9BXI6 508 aa24.26■■□□□ 1.47
SHMT1-207ENST00000580002 GAREM1Q9H706 876 aa24.26■■□□□ 1.47
SHMT1-207ENST00000580002 A0A1B0GTQ1 180 aa24.25■■□□□ 1.47
SHMT1-207ENST00000580002 HGSO14964 777 aaPredicted RBP24.25■■□□□ 1.47
SHMT1-207ENST00000580002 PKNOX1P55347 436 aa24.25■■□□□ 1.47
SHMT1-207ENST00000580002 HHEXQ03014 270 aa24.25■■□□□ 1.47
SHMT1-207ENST00000580002 DOC2AQ14183 400 aa24.25■■□□□ 1.47
SHMT1-207ENST00000580002 GKAP1Q5VSY0 366 aaPredicted RBP24.25■■□□□ 1.47
SHMT1-207ENST00000580002 PRAMEF13Q5VWM6 474 aa24.25■■□□□ 1.47
SHMT1-207ENST00000580002 KANSL1Q7Z3B3 1105 aa24.25■■□□□ 1.47
SHMT1-207ENST00000580002 AMIGO1Q86WK6 493 aa24.25■■□□□ 1.47
SHMT1-207ENST00000580002 SMPDL3AQ92484 453 aa24.25■■□□□ 1.47
SHMT1-207ENST00000580002 SH3KBP1Q96B97 665 aa24.25■■□□□ 1.47
SHMT1-207ENST00000580002 SPNS1Q9H2V7 528 aa24.25■■□□□ 1.47
SHMT1-207ENST00000580002 ACTR8Q9H981 624 aa24.25■■□□□ 1.47
SHMT1-207ENST00000580002 FARSBQ9NSD9 589 aaKnown RBP24.25■■□□□ 1.47
SHMT1-207ENST00000580002 CUEDC1Q9NWM3 386 aaPredicted RBP24.25■■□□□ 1.47
SHMT1-207ENST00000580002 ARID1BQ8NFD5 2236 aaPredicted RBP24.24■■□□□ 1.47
SHMT1-207ENST00000580002 KCNE1BA0A087WTH5 132 aa24.24■■□□□ 1.47
SHMT1-207ENST00000580002 OR5K4A6NMS3 321 aa24.24■■□□□ 1.47
SHMT1-207ENST00000580002 HDAC3O15379 428 aa24.24■■□□□ 1.47
SHMT1-207ENST00000580002 PRICKLE3O43900 615 aaPredicted RBP24.24■■□□□ 1.47
SHMT1-207ENST00000580002 WFS1O76024 890 aa24.24■■□□□ 1.47
SHMT1-207ENST00000580002 ALOX15P16050 662 aaPredicted RBP24.24■■□□□ 1.47
SHMT1-207ENST00000580002 NDUFS1P28331 727 aa24.24■■□□□ 1.47
SHMT1-207ENST00000580002 ARFIP2P53365 341 aa24.24■■□□□ 1.47
SHMT1-207ENST00000580002 MEF2AQ02078 507 aaPredicted RBP24.24■■□□□ 1.47
SHMT1-207ENST00000580002 PLCL1Q15111 1095 aa24.24■■□□□ 1.47
SHMT1-207ENST00000580002 CPSF6Q16630 551 aaKnown RBP eCLIP24.24■■□□□ 1.47
SHMT1-207ENST00000580002 XKR6Q5GH73 641 aa24.24■■□□□ 1.47
SHMT1-207ENST00000580002 OGFOD3Q6PK18 319 aa24.24■■□□□ 1.47
SHMT1-207ENST00000580002 EPGNQ6UW88 154 aa24.24■■□□□ 1.47
SHMT1-207ENST00000580002 ADGRF3Q8IZF5 1079 aa24.24■■□□□ 1.47
SHMT1-207ENST00000580002 RNF175Q8N4F7 328 aa24.24■■□□□ 1.47
SHMT1-207ENST00000580002 METTL6Q8TCB7 284 aa24.24■■□□□ 1.47
SHMT1-207ENST00000580002 MTFMTQ96DP5 389 aaKnown RBP24.24■■□□□ 1.47
SHMT1-207ENST00000580002 POT1Q9NUX5 634 aa24.24■■□□□ 1.47
SHMT1-207ENST00000580002 GIMAP2Q9UG22 337 aa24.24■■□□□ 1.47
SHMT1-207ENST00000580002 SLC6A14Q9UN76 642 aa24.24■■□□□ 1.47
SHMT1-207ENST00000580002 DIAPH2O60879 1101 aa24.24■■□□□ 1.47
SHMT1-207ENST00000580002 CLDN9O95484 217 aa24.24■■□□□ 1.47
SHMT1-207ENST00000580002 EBLN1P0CF75 366 aa24.24■■□□□ 1.47
SHMT1-207ENST00000580002 EPHA3P29320 983 aa24.24■■□□□ 1.47
SHMT1-207ENST00000580002 EPHA8P29322 1005 aaPredicted RBP24.24■■□□□ 1.47
SHMT1-207ENST00000580002 NAA20P61599 178 aa24.24■■□□□ 1.47
SHMT1-207ENST00000580002 ADNP2Q6IQ32 1131 aa24.24■■□□□ 1.47
SHMT1-207ENST00000580002 SLC23A3Q6PIS1 610 aa24.24■■□□□ 1.47
SHMT1-207ENST00000580002 SLCO4C1Q6ZQN7 724 aa24.24■■□□□ 1.47
SHMT1-207ENST00000580002 KYQ8NBH2 561 aa24.24■■□□□ 1.47
SHMT1-207ENST00000580002 OR2A1Q8NGT9 310 aa24.24■■□□□ 1.47
SHMT1-207ENST00000580002 TWIST2Q8WVJ9 160 aa24.24■■□□□ 1.47
SHMT1-207ENST00000580002 OR52B2Q96RD2 323 aa24.24■■□□□ 1.47
SHMT1-207ENST00000580002 MIPEPQ99797 713 aa24.24■■□□□ 1.47
SHMT1-207ENST00000580002 LRFN3Q9BTN0 628 aa24.24■■□□□ 1.47
SHMT1-207ENST00000580002 SRMSQ9H3Y6 488 aa24.24■■□□□ 1.47
SHMT1-207ENST00000580002 KLHL20Q9Y2M5 609 aa24.24■■□□□ 1.47
SHMT1-207ENST00000580002 PIP5K1BO14986 540 aa24.23■■□□□ 1.47
SHMT1-207ENST00000580002 NRP2O60462 931 aa24.23■■□□□ 1.47
SHMT1-207ENST00000580002 CRCPO75575 148 aa24.23■■□□□ 1.47
SHMT1-207ENST00000580002 CHRM5P08912 532 aaPredicted RBP24.23■■□□□ 1.47
SHMT1-207ENST00000580002 LINC00032P0C843 101 aa24.23■■□□□ 1.47
SHMT1-207ENST00000580002 CDH1P12830 882 aa24.23■■□□□ 1.47
SHMT1-207ENST00000580002 HGFP14210 728 aa24.23■■□□□ 1.47
SHMT1-207ENST00000580002 MPLP40238 635 aa24.23■■□□□ 1.47
SHMT1-207ENST00000580002 ARRB1P49407 418 aaPredicted RBP24.23■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms