RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 HIST2H2BDQ6DRA6 164 aa15.3■□□□□ 0.04
VPS53-218ENST00000575207 RTL6Q6ICC9 239 aa15.3■□□□□ 0.04
VPS53-218ENST00000575207 UNC5AQ6ZN44 842 aa15.3■□□□□ 0.04
VPS53-218ENST00000575207 LILRA3Q8N6C8 439 aaPredicted RBP15.3■□□□□ 0.04
VPS53-218ENST00000575207 TTC29Q8NA56 475 aaPredicted RBP15.3■□□□□ 0.04
VPS53-218ENST00000575207 LRRC46Q96FV0 321 aa15.3■□□□□ 0.04
VPS53-218ENST00000575207 PEBP4Q96S96 227 aa15.3■□□□□ 0.04
VPS53-218ENST00000575207 GPR63Q9BZJ6 419 aa15.3■□□□□ 0.04
VPS53-218ENST00000575207 PNPLA3Q9NST1 481 aa15.3■□□□□ 0.04
VPS53-218ENST00000575207 FOXD3Q9UJU5 478 aaPredicted RBP15.3■□□□□ 0.04
VPS53-218ENST00000575207 ICKQ9UPZ9 632 aa15.3■□□□□ 0.04
VPS53-218ENST00000575207 CTNND2Q9UQB3 1225 aa15.3■□□□□ 0.04
VPS53-218ENST00000575207 FIGNL2A6NMB9 653 aa15.29■□□□□ 0.04
VPS53-218ENST00000575207 GABRR3A8MPY1 467 aa15.29■□□□□ 0.04
VPS53-218ENST00000575207 MAN1A2O60476 641 aa15.29■□□□□ 0.04
VPS53-218ENST00000575207 MED26O95402 600 aa15.29■□□□□ 0.04
VPS53-218ENST00000575207 CHRM5P08912 532 aaPredicted RBP15.29■□□□□ 0.04
VPS53-218ENST00000575207 PIRTP0C851 137 aa15.29■□□□□ 0.04
VPS53-218ENST00000575207 THBS2P35442 1172 aa15.29■□□□□ 0.04
VPS53-218ENST00000575207 NSFP46459 744 aaKnown RBP15.29■□□□□ 0.04
VPS53-218ENST00000575207 CAPRIN1Q14444 709 aaKnown RBP15.29■□□□□ 0.04
VPS53-218ENST00000575207 ISM2Q6H9L7 571 aa15.29■□□□□ 0.04
VPS53-218ENST00000575207 DPY19L2P1Q6NXN4 242 aa15.29■□□□□ 0.04
VPS53-218ENST00000575207 DNAJC24Q6P3W2 148 aa15.29■□□□□ 0.04
VPS53-218ENST00000575207 LRRC49Q8IUZ0 686 aa15.29■□□□□ 0.04
VPS53-218ENST00000575207 PSTKQ8IV42 348 aaKnown RBP15.29■□□□□ 0.04
VPS53-218ENST00000575207 CFAP206Q8IYR0 622 aa15.29■□□□□ 0.04
VPS53-218ENST00000575207 MAML1Q92585 1016 aa15.29■□□□□ 0.04
VPS53-218ENST00000575207 ZWILCHQ9H900 591 aa15.29■□□□□ 0.04
VPS53-218ENST00000575207 LRTM1Q9HBL6 345 aa15.29■□□□□ 0.04
VPS53-218ENST00000575207 IL26Q9NPH9 171 aa15.29■□□□□ 0.04
VPS53-218ENST00000575207 HAUS2Q9NVX0 235 aa15.29■□□□□ 0.04
VPS53-218ENST00000575207 PCSK1NQ9UHG2 260 aa15.29■□□□□ 0.04
VPS53-218ENST00000575207 TENM1Q9UKZ4 2725 aa15.28■□□□□ 0.04
VPS53-218ENST00000575207 CALB1P05937 261 aa15.28■□□□□ 0.04
VPS53-218ENST00000575207 HEXBP07686 556 aa15.28■□□□□ 0.04
VPS53-218ENST00000575207 MMP2P08253 660 aa15.28■□□□□ 0.04
VPS53-218ENST00000575207 ASCL1P50553 236 aa15.28■□□□□ 0.04
VPS53-218ENST00000575207 FMO1Q01740 532 aa15.28■□□□□ 0.04
VPS53-218ENST00000575207 CDR2Q01850 454 aa15.28■□□□□ 0.04
VPS53-218ENST00000575207 OGDHQ02218 1023 aa15.28■□□□□ 0.04
VPS53-218ENST00000575207 AP1B1Q10567 949 aa15.28■□□□□ 0.04
VPS53-218ENST00000575207 MESDQ14696 234 aa15.28■□□□□ 0.04
VPS53-218ENST00000575207 TAZQ16635 292 aa15.28■□□□□ 0.04
VPS53-218ENST00000575207 CYP4V2Q6ZWL3 525 aaPredicted RBP15.28■□□□□ 0.04
VPS53-218ENST00000575207 CREBRFQ8IUR6 639 aa15.28■□□□□ 0.04
VPS53-218ENST00000575207 PHC3Q8NDX5 983 aa15.28■□□□□ 0.04
VPS53-218ENST00000575207 PPP1R14CQ8TAE6 165 aa15.28■□□□□ 0.04
VPS53-218ENST00000575207 YIPF4Q9BSR8 244 aa15.28■□□□□ 0.04
VPS53-218ENST00000575207 GSX2Q9BZM3 304 aa15.28■□□□□ 0.04
VPS53-218ENST00000575207 C14orf105Q9NVL8 296 aa15.28■□□□□ 0.04
VPS53-218ENST00000575207 RBM22Q9NW64 420 aaKnown RBP eCLIP15.28■□□□□ 0.04
VPS53-218ENST00000575207 KMT2CQ8NEZ4 4911 aaKnown RBP15.27■□□□□ 0.04
VPS53-218ENST00000575207 FAM47E-STBD1D6RA91 191 aa15.27■□□□□ 0.04
VPS53-218ENST00000575207 NPIPA2E9PIF3 369 aa15.27■□□□□ 0.04
VPS53-218ENST00000575207 NPIPA3F8WFD2 350 aa15.27■□□□□ 0.04
VPS53-218ENST00000575207 CD5LO43866 347 aa15.27■□□□□ 0.04
VPS53-218ENST00000575207 UGT1A9O60656 530 aa15.27■□□□□ 0.04
VPS53-218ENST00000575207 SOX30O94993 753 aa15.27■□□□□ 0.04
VPS53-218ENST00000575207 UGT1A6P19224 532 aa15.27■□□□□ 0.04
VPS53-218ENST00000575207 MAGP20916 626 aa15.27■□□□□ 0.04
VPS53-218ENST00000575207 AMPD1P23109 780 aa15.27■□□□□ 0.04
VPS53-218ENST00000575207 SHMT2P34897 504 aa15.27■□□□□ 0.04
VPS53-218ENST00000575207 CD151P48509 253 aa15.27■□□□□ 0.04
VPS53-218ENST00000575207 PRKG2Q13237 762 aa15.27■□□□□ 0.04
VPS53-218ENST00000575207 BOP1Q14137 746 aaKnown RBP15.27■□□□□ 0.04
VPS53-218ENST00000575207 POU4F3Q15319 338 aa15.27■□□□□ 0.04
VPS53-218ENST00000575207 BTBD16Q32M84 506 aa15.27■□□□□ 0.04
VPS53-218ENST00000575207 BCL7AQ4VC05 210 aa15.27■□□□□ 0.04
VPS53-218ENST00000575207 DAAM2Q86T65 1068 aa15.27■□□□□ 0.04
VPS53-218ENST00000575207 ZNF227Q86WZ6 799 aa15.27■□□□□ 0.04
VPS53-218ENST00000575207 RELL2Q8NC24 303 aaPredicted RBP15.27■□□□□ 0.04
VPS53-218ENST00000575207 LINC01560Q8TB33 94 aa15.27■□□□□ 0.04
VPS53-218ENST00000575207 SMPDL3BQ92485 455 aa15.27■□□□□ 0.04
VPS53-218ENST00000575207 SLCO2A1Q92959 643 aa15.27■□□□□ 0.04
VPS53-218ENST00000575207 TRIB3Q96RU7 358 aa15.27■□□□□ 0.04
VPS53-218ENST00000575207 HGH1Q9BTY7 390 aa15.27■□□□□ 0.04
VPS53-218ENST00000575207 ATG10Q9H0Y0 220 aa15.27■□□□□ 0.04
VPS53-218ENST00000575207 OR52A5Q9H2C5 316 aa15.27■□□□□ 0.04
VPS53-218ENST00000575207 UGT1A7Q9HAW7 530 aa15.27■□□□□ 0.04
VPS53-218ENST00000575207 UGT1A10Q9HAW8 530 aa15.27■□□□□ 0.04
VPS53-218ENST00000575207 UGT1A8Q9HAW9 530 aa15.27■□□□□ 0.04
VPS53-218ENST00000575207 OR6C2Q9NZP2 312 aa15.27■□□□□ 0.04
VPS53-218ENST00000575207 A0A087X1B8 175 aa15.26■□□□□ 0.03
VPS53-218ENST00000575207 HYKKA2RU49 373 aa15.26■□□□□ 0.03
VPS53-218ENST00000575207 H3BRJ5 948 aa15.26■□□□□ 0.03
VPS53-218ENST00000575207 GPR39O43194 453 aa15.26■□□□□ 0.03
VPS53-218ENST00000575207 PDE9AO76083 593 aa15.26■□□□□ 0.03
VPS53-218ENST00000575207 FGFR1OPO95684 399 aaKnown RBP15.26■□□□□ 0.03
VPS53-218ENST00000575207 TP53P04637 393 aaPredicted RBP15.26■□□□□ 0.03
VPS53-218ENST00000575207 CHRNB2P17787 502 aa15.26■□□□□ 0.03
VPS53-218ENST00000575207 ZNF165P49910 485 aa15.26■□□□□ 0.03
VPS53-218ENST00000575207 NR0B1P51843 470 aaKnown RBP15.26■□□□□ 0.03
VPS53-218ENST00000575207 FIGNQ5HY92 759 aa15.26■□□□□ 0.03
VPS53-218ENST00000575207 ZC3H12BQ5HYM0 836 aaKnown RBP15.26■□□□□ 0.03
VPS53-218ENST00000575207 FKBP15Q5T1M5 1219 aa15.26■□□□□ 0.03
VPS53-218ENST00000575207 RIPPLY2Q5TAB7 128 aa15.26■□□□□ 0.03
VPS53-218ENST00000575207 ZNF468Q5VIY5 522 aaPredicted RBP15.26■□□□□ 0.03
VPS53-218ENST00000575207 DCUN1D2Q6PH85 259 aa15.26■□□□□ 0.03
VPS53-218ENST00000575207 PAOXQ6QHF9 649 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms