RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 HIPK1Q86Z02 1210 aa22.15■■□□□ 1.14
VPS53-211ENST00000571805 RAB2BQ8WUD1 216 aa22.15■■□□□ 1.14
VPS53-211ENST00000571805 THG1LQ9NWX6 298 aaKnown RBP22.15■■□□□ 1.14
VPS53-211ENST00000571805 SLC22A14Q9Y267 594 aa22.15■■□□□ 1.14
VPS53-211ENST00000571805 HS3ST2Q9Y278 367 aa22.15■■□□□ 1.14
VPS53-211ENST00000571805 KRT87PA6NCN2 255 aa22.14■■□□□ 1.14
VPS53-211ENST00000571805 SPIDRQ14159 915 aa22.14■■□□□ 1.14
VPS53-211ENST00000571805 OR4F3Q6IEY1 312 aa22.14■■□□□ 1.14
VPS53-211ENST00000571805 C22orf39Q6P5X5 142 aa22.14■■□□□ 1.14
VPS53-211ENST00000571805 HS6ST3Q8IZP7 471 aa22.14■■□□□ 1.14
VPS53-211ENST00000571805 CMTM8Q8IZV2 173 aa22.14■■□□□ 1.14
VPS53-211ENST00000571805 SKA2Q8WVK7 121 aaPredicted RBP22.14■■□□□ 1.14
VPS53-211ENST00000571805 MRPS31Q92665 395 aaKnown RBP22.14■■□□□ 1.14
VPS53-211ENST00000571805 MAGED4Q96JG8 741 aa22.14■■□□□ 1.14
VPS53-211ENST00000571805 APOLD1Q96LR9 279 aa22.14■■□□□ 1.14
VPS53-211ENST00000571805 BEGAINQ9BUH8 593 aa22.14■■□□□ 1.14
VPS53-211ENST00000571805 CPEB1Q9BZB8 566 aaKnown RBP22.14■■□□□ 1.14
VPS53-211ENST00000571805 RFXANKO14593 260 aa22.14■■□□□ 1.13
VPS53-211ENST00000571805 ACPPP15309 386 aa22.14■■□□□ 1.13
VPS53-211ENST00000571805 SPINT3P49223 89 aa22.14■■□□□ 1.13
VPS53-211ENST00000571805 TOP3AQ13472 1001 aaPredicted RBP22.14■■□□□ 1.13
VPS53-211ENST00000571805 MOGQ16653 247 aa22.14■■□□□ 1.13
VPS53-211ENST00000571805 CPZQ66K79 652 aa22.14■■□□□ 1.13
VPS53-211ENST00000571805 MSANTD1Q6ZTZ1 278 aa22.14■■□□□ 1.13
VPS53-211ENST00000571805 TMCO2Q7Z6W1 182 aaPredicted RBP22.14■■□□□ 1.13
VPS53-211ENST00000571805 FBLIM1Q8WUP2 373 aa22.14■■□□□ 1.13
VPS53-211ENST00000571805 BORCS5Q969J3 196 aa22.14■■□□□ 1.13
VPS53-211ENST00000571805 FKBP10Q96AY3 582 aa22.14■■□□□ 1.13
VPS53-211ENST00000571805 BRD9Q9H8M2 597 aa22.14■■□□□ 1.13
VPS53-211ENST00000571805 CREBZFQ9NS37 354 aa22.14■■□□□ 1.13
VPS53-211ENST00000571805 FBXO10Q9UK96 956 aa22.14■■□□□ 1.13
VPS53-211ENST00000571805 BLOC1S6Q9UL45 172 aa22.14■■□□□ 1.13
VPS53-211ENST00000571805 PSME2Q9UL46 239 aa22.14■■□□□ 1.13
VPS53-211ENST00000571805 CXorf51AA0A1B0GTR3 108 aa22.13■■□□□ 1.13
VPS53-211ENST00000571805 TEX28O15482 410 aa22.13■■□□□ 1.13
VPS53-211ENST00000571805 HLA-FP30511 346 aa22.13■■□□□ 1.13
VPS53-211ENST00000571805 RYKP34925 604 aa22.13■■□□□ 1.13
VPS53-211ENST00000571805 MTAPQ13126 283 aa22.13■■□□□ 1.13
VPS53-211ENST00000571805 FRG2Q64ET8 278 aa22.13■■□□□ 1.13
VPS53-211ENST00000571805 NOXRED1Q6NXP6 359 aa22.13■■□□□ 1.13
VPS53-211ENST00000571805 ZDHHC21Q8IVQ6 265 aa22.13■■□□□ 1.13
VPS53-211ENST00000571805 RNF175Q8N4F7 328 aa22.13■■□□□ 1.13
VPS53-211ENST00000571805 TBC1D20Q96BZ9 403 aa22.13■■□□□ 1.13
VPS53-211ENST00000571805 FCRL1Q96LA6 429 aa22.13■■□□□ 1.13
VPS53-211ENST00000571805 FRG2BQ96QU4 278 aa22.13■■□□□ 1.13
VPS53-211ENST00000571805 PAK1IP1Q9NWT1 392 aaPredicted RBP22.13■■□□□ 1.13
VPS53-211ENST00000571805 NAALAD2Q9Y3Q0 740 aa22.13■■□□□ 1.13
VPS53-211ENST00000571805 SLC1A7O00341 560 aa22.13■■□□□ 1.13
VPS53-211ENST00000571805 SLC16A5O15375 505 aa22.13■■□□□ 1.13
VPS53-211ENST00000571805 CCNDBP1O95273 360 aa22.13■■□□□ 1.13
VPS53-211ENST00000571805 ATP1B2P14415 290 aaPredicted RBP22.13■■□□□ 1.13
VPS53-211ENST00000571805 PCSK2P16519 638 aa22.13■■□□□ 1.13
VPS53-211ENST00000571805 RFX4Q33E94 735 aa22.13■■□□□ 1.13
VPS53-211ENST00000571805 LRRC73Q5JTD7 316 aa22.13■■□□□ 1.13
VPS53-211ENST00000571805 PLEKHS1Q5SXH7 462 aa22.13■■□□□ 1.13
VPS53-211ENST00000571805 SHQ1Q6PI26 577 aaKnown RBP22.13■■□□□ 1.13
VPS53-211ENST00000571805 SERPINA13PQ6UXR4 307 aa22.13■■□□□ 1.13
VPS53-211ENST00000571805 DPY19L3Q6ZPD9 716 aa22.13■■□□□ 1.13
VPS53-211ENST00000571805 SERPINA11Q86U17 422 aa22.13■■□□□ 1.13
VPS53-211ENST00000571805 ABTB1Q969K4 478 aaPredicted RBP22.13■■□□□ 1.13
VPS53-211ENST00000571805 ZDHHC6Q9H6R6 413 aa22.13■■□□□ 1.13
VPS53-211ENST00000571805 DNAJC11Q9NVH1 559 aa22.13■■□□□ 1.13
VPS53-211ENST00000571805 RHBDL2Q9NX52 303 aa22.13■■□□□ 1.13
VPS53-211ENST00000571805 B4GALT6Q9UBX8 382 aa22.13■■□□□ 1.13
VPS53-211ENST00000571805 CD84Q9UIB8 345 aa22.13■■□□□ 1.13
VPS53-211ENST00000571805 ITPKAP23677 461 aa22.12■■□□□ 1.13
VPS53-211ENST00000571805 RAD23AP54725 363 aa22.12■■□□□ 1.13
VPS53-211ENST00000571805 IL18R1Q13478 541 aa22.12■■□□□ 1.13
VPS53-211ENST00000571805 CARD16Q5EG05 197 aa22.12■■□□□ 1.13
VPS53-211ENST00000571805 ZDHHC20Q5W0Z9 365 aa22.12■■□□□ 1.13
VPS53-211ENST00000571805 DUS1LQ6P1R4 473 aaKnown RBP22.12■■□□□ 1.13
VPS53-211ENST00000571805 DDX53Q86TM3 631 aaKnown RBP22.12■■□□□ 1.13
VPS53-211ENST00000571805 TMC8Q8IU68 726 aa22.12■■□□□ 1.13
VPS53-211ENST00000571805 MIPOL1Q8TD10 442 aa22.12■■□□□ 1.13
VPS53-211ENST00000571805 MUL1Q969V5 352 aa22.12■■□□□ 1.13
VPS53-211ENST00000571805 ZNF689Q96CS4 500 aaPredicted RBP22.12■■□□□ 1.13
VPS53-211ENST00000571805 BARD1Q99728 777 aaKnown RBP22.12■■□□□ 1.13
VPS53-211ENST00000571805 CFHR5Q9BXR6 569 aa22.12■■□□□ 1.13
VPS53-211ENST00000571805 AASDHPPTQ9NRN7 309 aa22.12■■□□□ 1.13
VPS53-211ENST00000571805 EXD2Q9NVH0 621 aa22.12■■□□□ 1.13
VPS53-211ENST00000571805 MITFO75030 526 aaPredicted RBP22.12■■□□□ 1.13
VPS53-211ENST00000571805 UGT2B4P06133 528 aa22.12■■□□□ 1.13
VPS53-211ENST00000571805 ITGAMP11215 1152 aa22.12■■□□□ 1.13
VPS53-211ENST00000571805 PCMT1P22061 227 aa22.12■■□□□ 1.13
VPS53-211ENST00000571805 PFN3P60673 137 aa22.12■■□□□ 1.13
VPS53-211ENST00000571805 SP140Q13342 867 aa22.12■■□□□ 1.13
VPS53-211ENST00000571805 CYP2U1Q7Z449 544 aa22.12■■□□□ 1.13
VPS53-211ENST00000571805 CYP4Z1Q86W10 505 aa22.12■■□□□ 1.13
VPS53-211ENST00000571805 VWCEQ96DN2 955 aa22.12■■□□□ 1.13
VPS53-211ENST00000571805 SAMD4AQ9UPU9 718 aaKnown RBP22.12■■□□□ 1.13
VPS53-211ENST00000571805 ERVK-11Q9UQG0 969 aa22.12■■□□□ 1.13
VPS53-211ENST00000571805 NUP214P35658 2090 aaPredicted RBP22.11■■□□□ 1.13
VPS53-211ENST00000571805 MYOFQ9NZM1 2061 aa22.11■■□□□ 1.13
VPS53-211ENST00000571805 SCN2BO60939 215 aa22.11■■□□□ 1.13
VPS53-211ENST00000571805 JUPP14923 745 aa22.11■■□□□ 1.13
VPS53-211ENST00000571805 KIR3DL1P43629 444 aa22.11■■□□□ 1.13
VPS53-211ENST00000571805 TRPC1P48995 793 aa22.11■■□□□ 1.13
VPS53-211ENST00000571805 BMXP51813 675 aa22.11■■□□□ 1.13
VPS53-211ENST00000571805 CDK5R2Q13319 367 aa22.11■■□□□ 1.13
VPS53-211ENST00000571805 DUOXA1Q1HG43 343 aa22.11■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms