RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 FURINP09958 794 aa14.45□□□□□ -0.1
VPS39-210ENST00000568357 FAM87AP0C7U9 286 aa14.45□□□□□ -0.1
VPS39-210ENST00000568357 CBSLP0DN79 551 aa14.45□□□□□ -0.1
VPS39-210ENST00000568357 ERGP11308 486 aa14.45□□□□□ -0.1
VPS39-210ENST00000568357 ENO3P13929 434 aaPredicted RBP14.45□□□□□ -0.1
VPS39-210ENST00000568357 CBSP35520 551 aa14.45□□□□□ -0.1
VPS39-210ENST00000568357 SKIV2L2P42285 1042 aaKnown RBP14.45□□□□□ -0.1
VPS39-210ENST00000568357 CDC20Q12834 499 aa14.45□□□□□ -0.1
VPS39-210ENST00000568357 NFATC3Q12968 1075 aa14.45□□□□□ -0.1
VPS39-210ENST00000568357 ERV3-1Q14264 604 aa14.45□□□□□ -0.1
VPS39-210ENST00000568357 CRTC2Q53ET0 693 aaPredicted RBP14.45□□□□□ -0.1
VPS39-210ENST00000568357 PAQR3Q6TCH7 311 aa14.45□□□□□ -0.1
VPS39-210ENST00000568357 MCATQ8IVS2 390 aaKnown RBP14.45□□□□□ -0.1
VPS39-210ENST00000568357 GPR135Q8IZ08 494 aa14.45□□□□□ -0.1
VPS39-210ENST00000568357 ZBED8Q8IZ13 594 aa14.45□□□□□ -0.1
VPS39-210ENST00000568357 RAB42Q8N4Z0 105 aa14.45□□□□□ -0.1
VPS39-210ENST00000568357 OR2L3Q8NG85 312 aa14.45□□□□□ -0.1
VPS39-210ENST00000568357 GABPB2Q8TAK5 448 aaPredicted RBP14.45□□□□□ -0.1
VPS39-210ENST00000568357 EEF1AKMT1Q8WVE0 214 aa14.45□□□□□ -0.1
VPS39-210ENST00000568357 DLG3Q92796 817 aa14.45□□□□□ -0.1
VPS39-210ENST00000568357 N4BP2L2Q92802 583 aaPredicted RBP14.45□□□□□ -0.1
VPS39-210ENST00000568357 MIPEPQ99797 713 aa14.45□□□□□ -0.1
VPS39-210ENST00000568357 GPR87Q9BY21 358 aa14.45□□□□□ -0.1
VPS39-210ENST00000568357 EURLQ9NYK6 297 aa14.45□□□□□ -0.1
VPS39-210ENST00000568357 TRMT6Q9UJA5 497 aaKnown RBP14.45□□□□□ -0.1
VPS39-210ENST00000568357 PLCL2Q9UPR0 1127 aa14.45□□□□□ -0.1
VPS39-210ENST00000568357 PSAT1Q9Y617 370 aa14.45□□□□□ -0.1
VPS39-210ENST00000568357 NDC80O14777 642 aa14.44□□□□□ -0.1
VPS39-210ENST00000568357 ZBTB14O43829 449 aa14.44□□□□□ -0.1
VPS39-210ENST00000568357 SLC16A8O95907 504 aa14.44□□□□□ -0.1
VPS39-210ENST00000568357 CAPN1P07384 714 aa14.44□□□□□ -0.1
VPS39-210ENST00000568357 RPS18P62269 152 aaKnown RBP14.44□□□□□ -0.1
VPS39-210ENST00000568357 NFKB2Q00653 900 aa14.44□□□□□ -0.1
VPS39-210ENST00000568357 MC1RQ01726 317 aa14.44□□□□□ -0.1
VPS39-210ENST00000568357 CALCOCO2Q13137 446 aa14.44□□□□□ -0.1
VPS39-210ENST00000568357 DEFB109BQ30KR1 87 aa14.44□□□□□ -0.1
VPS39-210ENST00000568357 PTCHD3Q3KNS1 767 aa14.44□□□□□ -0.1
VPS39-210ENST00000568357 HECTD2Q5U5R9 776 aa14.44□□□□□ -0.1
VPS39-210ENST00000568357 ZNF385CQ66K41 422 aaPredicted RBP14.44□□□□□ -0.1
VPS39-210ENST00000568357 UGT3A1Q6NUS8 523 aa14.44□□□□□ -0.1
VPS39-210ENST00000568357 BORAQ6PGQ7 559 aa14.44□□□□□ -0.1
VPS39-210ENST00000568357 SUSD1Q6UWL2 747 aa14.44□□□□□ -0.1
VPS39-210ENST00000568357 ZNF655Q8N720 491 aaPredicted RBP14.44□□□□□ -0.1
VPS39-210ENST00000568357 FBXO15Q8NCQ5 510 aaPredicted RBP14.44□□□□□ -0.1
VPS39-210ENST00000568357 ZNF480Q8WV37 535 aa14.44□□□□□ -0.1
VPS39-210ENST00000568357 ZUFSPQ96AP4 578 aa14.44□□□□□ -0.1
VPS39-210ENST00000568357 ARHGAP9Q9BRR9 750 aa14.44□□□□□ -0.1
VPS39-210ENST00000568357 ACTL8Q9H568 366 aa14.44□□□□□ -0.1
VPS39-210ENST00000568357 FAM114A2Q9NRY5 505 aa14.44□□□□□ -0.1
VPS39-210ENST00000568357 TAS2R13Q9NYV9 303 aa14.44□□□□□ -0.1
VPS39-210ENST00000568357 CDC23Q9UJX2 597 aa14.44□□□□□ -0.1
VPS39-210ENST00000568357 ADAMTS6Q9UKP5 1117 aa14.44□□□□□ -0.1
VPS39-210ENST00000568357 FARSAQ9Y285 508 aaKnown RBP14.44□□□□□ -0.1
VPS39-210ENST00000568357 VWA7Q9Y334 891 aa14.44□□□□□ -0.1
VPS39-210ENST00000568357 KLK4Q9Y5K2 254 aa14.44□□□□□ -0.1
VPS39-210ENST00000568357 TARM1B6A8C7 271 aa14.43□□□□□ -0.1
VPS39-210ENST00000568357 E7ENX8 843 aa14.43□□□□□ -0.1
VPS39-210ENST00000568357 EIF3FO00303 357 aaPredicted RBP14.43□□□□□ -0.1
VPS39-210ENST00000568357 NRP2O60462 931 aa14.43□□□□□ -0.1
VPS39-210ENST00000568357 CTSVO60911 334 aa14.43□□□□□ -0.1
VPS39-210ENST00000568357 PIAS1O75925 651 aa14.43□□□□□ -0.1
VPS39-210ENST00000568357 FKBP9O95302 570 aa14.43□□□□□ -0.1
VPS39-210ENST00000568357 SYF2O95926 243 aaKnown RBP14.43□□□□□ -0.1
VPS39-210ENST00000568357 PTPN4P29074 926 aa14.43□□□□□ -0.1
VPS39-210ENST00000568357 PNLIPRP1P54315 467 aa14.43□□□□□ -0.1
VPS39-210ENST00000568357 RPS15P62841 145 aaKnown RBP14.43□□□□□ -0.1
VPS39-210ENST00000568357 TAP2Q03519 686 aa14.43□□□□□ -0.1
VPS39-210ENST00000568357 MGAT5Q09328 741 aa14.43□□□□□ -0.1
VPS39-210ENST00000568357 ARHGAP19Q14CB8 494 aa14.43□□□□□ -0.1
VPS39-210ENST00000568357 FAM69BQ5VUD6 431 aa14.43□□□□□ -0.1
VPS39-210ENST00000568357 UBE2R2Q712K3 238 aaPredicted RBP14.43□□□□□ -0.1
VPS39-210ENST00000568357 LRRC56Q8IYG6 542 aaPredicted RBP14.43□□□□□ -0.1
VPS39-210ENST00000568357 SYTL1Q8IYJ3 562 aa14.43□□□□□ -0.1
VPS39-210ENST00000568357 GPATCH11Q8N954 259 aa14.43□□□□□ -0.1
VPS39-210ENST00000568357 PPFIBP2Q8ND30 876 aa14.43□□□□□ -0.1
VPS39-210ENST00000568357 SMPDL3AQ92484 453 aa14.43□□□□□ -0.1
VPS39-210ENST00000568357 CATSPER2Q96P56 530 aa14.43□□□□□ -0.1
VPS39-210ENST00000568357 OLFM1Q99784 485 aa14.43□□□□□ -0.1
VPS39-210ENST00000568357 ACAT2Q9BWD1 397 aa14.43□□□□□ -0.1
VPS39-210ENST00000568357 FAM117AQ9C073 453 aa14.43□□□□□ -0.1
VPS39-210ENST00000568357 SLC7A5P2Q9GIP4 190 aa14.43□□□□□ -0.1
VPS39-210ENST00000568357 SAYSD1Q9NPB0 183 aa14.43□□□□□ -0.1
VPS39-210ENST00000568357 SMYD2Q9NRG4 433 aa14.43□□□□□ -0.1
VPS39-210ENST00000568357 INTS7Q9NVH2 962 aaKnown RBP14.43□□□□□ -0.1
VPS39-210ENST00000568357 UTP11Q9Y3A2 253 aaKnown RBP14.43□□□□□ -0.1
VPS39-210ENST00000568357 HEMK1Q9Y5R4 338 aaPredicted RBP14.43□□□□□ -0.1
VPS39-210ENST00000568357 AP1M2Q9Y6Q5 423 aa14.43□□□□□ -0.1
VPS39-210ENST00000568357 TEX15Q9BXT5 2789 aa14.42□□□□□ -0.1
VPS39-210ENST00000568357 ZSCAN9O15535 394 aaPredicted RBP14.42□□□□□ -0.1
VPS39-210ENST00000568357 URI1O94763 535 aaPredicted RBP14.42□□□□□ -0.1
VPS39-210ENST00000568357 TSPAN12O95859 305 aa14.42□□□□□ -0.1
VPS39-210ENST00000568357 RECKO95980 971 aa14.42□□□□□ -0.1
VPS39-210ENST00000568357 HBQ1P09105 142 aa14.42□□□□□ -0.1
VPS39-210ENST00000568357 FDXRP22570 491 aa14.42□□□□□ -0.1
VPS39-210ENST00000568357 SSTR1P30872 391 aa14.42□□□□□ -0.1
VPS39-210ENST00000568357 HSD17B2P37059 387 aa14.42□□□□□ -0.1
VPS39-210ENST00000568357 CCR10P46092 362 aa14.42□□□□□ -0.1
VPS39-210ENST00000568357 GCGRP47871 477 aa14.42□□□□□ -0.1
VPS39-210ENST00000568357 PLTPP55058 493 aa14.42□□□□□ -0.1
VPS39-210ENST00000568357 TSTA3Q13630 321 aaPredicted RBP14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms