RNA–Protein interactions for RNA: ENST00000567805.5

CLK3-219, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 327 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-219ENST00000567805 TRIM4Q9C037 500 aa4.6□□□□□ -1.67
CLK3-219ENST00000567805 SPRTNQ9H040 489 aaPredicted RBP4.6□□□□□ -1.67
CLK3-219ENST00000567805 ING2Q9H160 280 aa4.6□□□□□ -1.67
CLK3-219ENST00000567805 EPN3Q9H201 632 aa4.6□□□□□ -1.67
CLK3-219ENST00000567805 CCDC68Q9H2F9 335 aa4.6□□□□□ -1.67
CLK3-219ENST00000567805 ACSS2Q9NR19 701 aa4.6□□□□□ -1.67
CLK3-219ENST00000567805 ENAMQ9NRM1 1142 aa4.6□□□□□ -1.67
CLK3-219ENST00000567805 FAM114A2Q9NRY5 505 aa4.6□□□□□ -1.67
CLK3-219ENST00000567805 TXLNGQ9NUQ3 528 aa4.6□□□□□ -1.67
CLK3-219ENST00000567805 IRAK4Q9NWZ3 460 aa4.6□□□□□ -1.67
CLK3-219ENST00000567805 EURLQ9NYK6 297 aa4.6□□□□□ -1.67
CLK3-219ENST00000567805 SPATA7Q9P0W8 599 aa4.6□□□□□ -1.67
CLK3-219ENST00000567805 CAMSAP3Q9P1Y5 1249 aaPredicted RBP4.6□□□□□ -1.67
CLK3-219ENST00000567805 IFT80Q9P2H3 777 aaPredicted RBP4.6□□□□□ -1.67
CLK3-219ENST00000567805 NDOR1Q9UHB4 597 aa4.6□□□□□ -1.67
CLK3-219ENST00000567805 CIDEBQ9UHD4 219 aa4.6□□□□□ -1.67
CLK3-219ENST00000567805 PCYOX1Q9UHG3 505 aa4.6□□□□□ -1.67
CLK3-219ENST00000567805 GPN3Q9UHW5 284 aaPredicted RBP4.6□□□□□ -1.67
CLK3-219ENST00000567805 TLK1Q9UKI8 766 aa4.6□□□□□ -1.67
CLK3-219ENST00000567805 SNX12Q9UMY4 172 aa4.6□□□□□ -1.67
CLK3-219ENST00000567805 G3BP2Q9UN86 482 aaKnown RBP4.6□□□□□ -1.67
CLK3-219ENST00000567805 CRYL1Q9Y2S2 319 aa4.6□□□□□ -1.67
CLK3-219ENST00000567805 PCDHGB7Q9Y5F8 929 aa4.6□□□□□ -1.67
CLK3-219ENST00000567805 PCDHGA9Q9Y5G4 932 aaKnown RBP4.6□□□□□ -1.67
CLK3-219ENST00000567805 KLK4Q9Y5K2 254 aa4.6□□□□□ -1.67
CLK3-219ENST00000567805 NFS1Q9Y697 457 aa4.6□□□□□ -1.67
CLK3-219ENST00000567805 COMMD10Q9Y6G5 202 aa4.6□□□□□ -1.67
CLK3-219ENST00000567805 MYO18BQ8IUG5 2567 aa4.6□□□□□ -1.67
CLK3-219ENST00000567805 ZCWPW2A0A1B0GU75 182 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 A0A1B0GX78 115 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 FITM1A5D6W6 292 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 ARGFXA6NJG6 315 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 ZNF839A8K0R7 811 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 PYCARD-AS1I3L0S3 204 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 K7EM74 188 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 MYO1CO00159 1063 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 EIF3FO00303 357 aaPredicted RBP4.59□□□□□ -1.67
CLK3-219ENST00000567805 DNALI1O14645 258 aaPredicted RBP4.59□□□□□ -1.67
CLK3-219ENST00000567805 DSCR3O14972 297 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 ZNF185O15231 689 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 SRPX2O60687 465 aaPredicted RBP4.59□□□□□ -1.67
CLK3-219ENST00000567805 PSIP1O75475 530 aaKnown RBP4.59□□□□□ -1.67
CLK3-219ENST00000567805 CEACAM4O75871 244 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 ZIC2O95409 532 aaPredicted RBP4.59□□□□□ -1.67
CLK3-219ENST00000567805 TTC4O95801 387 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 IGHEP01854 428 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 ALBP02768 609 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 CATP04040 527 aaKnown RBP4.59□□□□□ -1.67
CLK3-219ENST00000567805 CTSBP07858 339 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 CBSLP0DN79 551 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 ERGP11308 486 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 PIM1P11309 404 aaPredicted RBP4.59□□□□□ -1.67
CLK3-219ENST00000567805 ENO3P13929 434 aaPredicted RBP4.59□□□□□ -1.67
CLK3-219ENST00000567805 TCP1P17987 556 aaKnown RBP4.59□□□□□ -1.67
CLK3-219ENST00000567805 NR1D1P20393 614 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 PSMB5P28074 263 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 CBSP35520 551 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 HSD17B2P37059 387 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 FOLR3P41439 243 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 GRIA3P42263 894 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 SLC1A2P43004 574 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 BDKRB1P46663 353 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 CCL11P51671 97 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 CLCN7P51798 805 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 CHAF1BQ13112 559 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 CTBP1Q13363 440 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 PTK6Q13882 451 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 GRM7Q14831 915 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 CYP2A13Q16696 494 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 LONRF1Q17RB8 773 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 KLHL38Q2WGJ6 581 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 FAM214AQ32MH5 1076 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 TTLL9Q3SXZ7 439 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 CCSMST1Q4G0I0 132 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 NKAIN1Q4KMZ8 207 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 ACSBG2Q5FVE4 666 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 SWT1Q5T5J6 900 aaKnown RBP4.59□□□□□ -1.67
CLK3-219ENST00000567805 RNASEH2BQ5TBB1 312 aaKnown RBP4.59□□□□□ -1.67
CLK3-219ENST00000567805 C1orf189Q5VU69 101 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 FAM69BQ5VUD6 431 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 MLIPQ5VWP3 458 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 PAPD7Q5XG87 772 aaKnown RBP4.59□□□□□ -1.67
CLK3-219ENST00000567805 FCRL6Q6DN72 434 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 MRPL14Q6P1L8 145 aaKnown RBP4.59□□□□□ -1.67
CLK3-219ENST00000567805 ZNF549Q6P9A3 640 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 LIAT1Q6ZQX7 453 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 TTLL10Q6ZVT0 673 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 TAX1BP1Q86VP1 789 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 HPS6Q86YV9 775 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 DENND6AQ8IWF6 608 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 FAM20CQ8IXL6 584 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 AGGF1Q8N302 714 aaeCLIP4.59□□□□□ -1.67
CLK3-219ENST00000567805 TTC29Q8NA56 475 aaPredicted RBP4.59□□□□□ -1.67
CLK3-219ENST00000567805 SERBP1Q8NC51 408 aaKnown RBP eCLIP4.59□□□□□ -1.67
CLK3-219ENST00000567805 FBXO15Q8NCQ5 510 aaPredicted RBP4.59□□□□□ -1.67
CLK3-219ENST00000567805 OR2L3Q8NG85 312 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 OR2A1Q8NGT9 310 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 OR9A1PQ8NGU1 263 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 OR2Y1Q8NGV0 311 aa4.59□□□□□ -1.67
CLK3-219ENST00000567805 GABPB2Q8TAK5 448 aaPredicted RBP4.59□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms