RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 ZUFSPQ96AP4 578 aa16.13■□□□□ 0.17
CLN3-211ENST00000564091 HES6Q96HZ4 224 aa16.13■□□□□ 0.17
CLN3-211ENST00000564091 THOC3Q96J01 351 aaKnown RBP16.13■□□□□ 0.17
CLN3-211ENST00000564091 MIPEPQ99797 713 aa16.13■□□□□ 0.17
CLN3-211ENST00000564091 DESI2Q9BSY9 194 aa16.13■□□□□ 0.17
CLN3-211ENST00000564091 LHPPQ9H008 270 aa16.13■□□□□ 0.17
CLN3-211ENST00000564091 MRM3Q9HC36 420 aaKnown RBP16.13■□□□□ 0.17
CLN3-211ENST00000564091 CHRAC1Q9NRG0 131 aa16.13■□□□□ 0.17
CLN3-211ENST00000564091 CATSPERZQ9NTU4 200 aa16.13■□□□□ 0.17
CLN3-211ENST00000564091 ANAPC5Q9UJX4 755 aa16.13■□□□□ 0.17
CLN3-211ENST00000564091 NXT1Q9UKK6 140 aaKnown RBP16.13■□□□□ 0.17
CLN3-211ENST00000564091 TTC7AQ9ULT0 858 aaPredicted RBP16.13■□□□□ 0.17
CLN3-211ENST00000564091 ZNF148Q9UQR1 794 aa16.13■□□□□ 0.17
CLN3-211ENST00000564091 OSGIN2Q9Y236 505 aa16.13■□□□□ 0.17
CLN3-211ENST00000564091 LOC105369274A0A096LPK9 316 aa16.12■□□□□ 0.17
CLN3-211ENST00000564091 LOC102723532A0A0G2JNH3 316 aa16.12■□□□□ 0.17
CLN3-211ENST00000564091 A0A0J9YVX5 310 aa16.12■□□□□ 0.17
CLN3-211ENST00000564091 FITM1A5D6W6 292 aa16.12■□□□□ 0.17
CLN3-211ENST00000564091 TARM1B6A8C7 271 aa16.12■□□□□ 0.17
CLN3-211ENST00000564091 E2F3O00716 465 aa16.12■□□□□ 0.17
CLN3-211ENST00000564091 LRRTM2O43300 516 aa16.12■□□□□ 0.17
CLN3-211ENST00000564091 APRTP07741 180 aa16.12■□□□□ 0.17
CLN3-211ENST00000564091 ZSCAN5DPP0CG00 497 aa16.12■□□□□ 0.17
CLN3-211ENST00000564091 TSFMP43897 325 aaKnown RBP16.12■□□□□ 0.17
CLN3-211ENST00000564091 YBX1P67809 324 aaKnown RBP16.12■□□□□ 0.17
CLN3-211ENST00000564091 CDC16Q13042 620 aa16.12■□□□□ 0.17
CLN3-211ENST00000564091 SNX1Q13596 522 aa16.12■□□□□ 0.17
CLN3-211ENST00000564091 ZNF169Q14929 603 aaPredicted RBP16.12■□□□□ 0.17
CLN3-211ENST00000564091 TMED2Q15363 201 aa16.12■□□□□ 0.17
CLN3-211ENST00000564091 FAM214AQ32MH5 1076 aa16.12■□□□□ 0.17
CLN3-211ENST00000564091 TTC23LQ6PF05 361 aa16.12■□□□□ 0.17
CLN3-211ENST00000564091 OR4N4Q8N0Y3 316 aa16.12■□□□□ 0.17
CLN3-211ENST00000564091 CATSPER1Q8NEC5 780 aa16.12■□□□□ 0.17
CLN3-211ENST00000564091 PPHLN1Q8NEY8 458 aaKnown RBP16.12■□□□□ 0.17
CLN3-211ENST00000564091 GSDMBQ8TAX9 411 aa16.12■□□□□ 0.17
CLN3-211ENST00000564091 RAD51AP1Q96B01 352 aa16.12■□□□□ 0.17
CLN3-211ENST00000564091 MRFAP1L1Q96HT8 127 aa16.12■□□□□ 0.17
CLN3-211ENST00000564091 CRB3Q9BUF7 120 aa16.12■□□□□ 0.17
CLN3-211ENST00000564091 ENAMQ9NRM1 1142 aa16.12■□□□□ 0.17
CLN3-211ENST00000564091 SEMA3GQ9NS98 782 aa16.12■□□□□ 0.17
CLN3-211ENST00000564091 ZC3H7BQ9UGR2 993 aaKnown RBP16.12■□□□□ 0.17
CLN3-211ENST00000564091 CAPN6Q9Y6Q1 641 aa16.12■□□□□ 0.17
CLN3-211ENST00000564091 FER1L5A0AVI2 2057 aa16.12■□□□□ 0.17
CLN3-211ENST00000564091 CNTRLQ7Z7A1 2325 aa16.12■□□□□ 0.17
CLN3-211ENST00000564091 HYKKA2RU49 373 aa16.11■□□□□ 0.17
CLN3-211ENST00000564091 CD3EAPO15446 510 aaKnown RBP16.11■□□□□ 0.17
CLN3-211ENST00000564091 SRPX2O60687 465 aaPredicted RBP16.11■□□□□ 0.17
CLN3-211ENST00000564091 KLHL18O94889 574 aa16.11■□□□□ 0.17
CLN3-211ENST00000564091 C1orf105O95561 183 aa16.11■□□□□ 0.17
CLN3-211ENST00000564091 EIF2S1P05198 315 aaKnown RBP16.11■□□□□ 0.17
CLN3-211ENST00000564091 SESN2P58004 480 aaPredicted RBP16.11■□□□□ 0.17
CLN3-211ENST00000564091 CRADDP78560 199 aa16.11■□□□□ 0.17
CLN3-211ENST00000564091 KLC1Q07866 573 aa16.11■□□□□ 0.17
CLN3-211ENST00000564091 TLR1Q15399 786 aa16.11■□□□□ 0.17
CLN3-211ENST00000564091 AARS2Q5JTZ9 985 aaKnown RBP16.11■□□□□ 0.17
CLN3-211ENST00000564091 STT3BQ8TCJ2 826 aa16.11■□□□□ 0.17
CLN3-211ENST00000564091 FAR1Q8WVX9 515 aa16.11■□□□□ 0.17
CLN3-211ENST00000564091 C8orf44Q96CB5 159 aa16.11■□□□□ 0.17
CLN3-211ENST00000564091 BAG1Q99933 345 aaPredicted RBP16.11■□□□□ 0.17
CLN3-211ENST00000564091 RAB11FIP5Q9BXF6 653 aa16.11■□□□□ 0.17
CLN3-211ENST00000564091 P2RY12Q9H244 342 aa16.11■□□□□ 0.17
CLN3-211ENST00000564091 EPS8L2Q9H6S3 715 aa16.11■□□□□ 0.17
CLN3-211ENST00000564091 ZNF160Q9HCG1 818 aa16.11■□□□□ 0.17
CLN3-211ENST00000564091 ZNF304Q9HCX3 659 aa16.11■□□□□ 0.17
CLN3-211ENST00000564091 IL1RAPL1Q9NZN1 696 aa16.11■□□□□ 0.17
CLN3-211ENST00000564091 TSR3Q9UJK0 312 aaKnown RBP16.11■□□□□ 0.17
CLN3-211ENST00000564091 CACNA1DQ01668 2161 aa16.11■□□□□ 0.17
CLN3-211ENST00000564091 LRBAP50851 2863 aa16.1■□□□□ 0.17
CLN3-211ENST00000564091 A0A1W2PPV9 198 aa16.1■□□□□ 0.17
CLN3-211ENST00000564091 ZGLP1P0C6A0 271 aa16.1■□□□□ 0.17
CLN3-211ENST00000564091 TTPAP49638 278 aa16.1■□□□□ 0.17
CLN3-211ENST00000564091 FASTKQ14296 549 aaKnown RBP16.1■□□□□ 0.17
CLN3-211ENST00000564091 VWA2Q5GFL6 755 aa16.1■□□□□ 0.17
CLN3-211ENST00000564091 PCID2Q5JVF3 399 aa16.1■□□□□ 0.17
CLN3-211ENST00000564091 CNSTQ6PJW8 725 aa16.1■□□□□ 0.17
CLN3-211ENST00000564091 ISLR2Q6UXK2 745 aa16.1■□□□□ 0.17
CLN3-211ENST00000564091 OTOAQ7RTW8 1153 aa16.1■□□□□ 0.17
CLN3-211ENST00000564091 SLC13A5Q86YT5 568 aaPredicted RBP16.1■□□□□ 0.17
CLN3-211ENST00000564091 OR2L3Q8NG85 312 aa16.1■□□□□ 0.17
CLN3-211ENST00000564091 OR2A1Q8NGT9 310 aa16.1■□□□□ 0.17
CLN3-211ENST00000564091 PEX13Q92968 403 aa16.1■□□□□ 0.17
CLN3-211ENST00000564091 MIEF2Q96C03 454 aa16.1■□□□□ 0.17
CLN3-211ENST00000564091 PANX3Q96QZ0 392 aa16.1■□□□□ 0.17
CLN3-211ENST00000564091 GNPTGQ9UJJ9 305 aa16.1■□□□□ 0.17
CLN3-211ENST00000564091 C3orf18Q9UK00 162 aa16.1■□□□□ 0.17
CLN3-211ENST00000564091 FAM169AQ9Y6X4 670 aa16.1■□□□□ 0.17
CLN3-211ENST00000564091 ENO4A6NNW6 628 aa16.09■□□□□ 0.17
CLN3-211ENST00000564091 FFAR3O14843 346 aa16.09■□□□□ 0.17
CLN3-211ENST00000564091 GPR42O15529 346 aa16.09■□□□□ 0.17
CLN3-211ENST00000564091 NDUFS3O75489 264 aa16.09■□□□□ 0.17
CLN3-211ENST00000564091 FKBP9O95302 570 aa16.09■□□□□ 0.17
CLN3-211ENST00000564091 EDN3P14138 238 aa16.09■□□□□ 0.17
CLN3-211ENST00000564091 ACPPP15309 386 aa16.09■□□□□ 0.17
CLN3-211ENST00000564091 RPL22P35268 128 aaKnown RBP16.09■□□□□ 0.17
CLN3-211ENST00000564091 CARSP49589 748 aaKnown RBP16.09■□□□□ 0.17
CLN3-211ENST00000564091 EIF3BP55884 814 aaKnown RBP16.09■□□□□ 0.17
CLN3-211ENST00000564091 OCA2Q04671 838 aa16.09■□□□□ 0.17
CLN3-211ENST00000564091 SEL1L2Q5TEA6 688 aa16.09■□□□□ 0.17
CLN3-211ENST00000564091 C1QL3Q5VWW1 255 aa16.09■□□□□ 0.17
CLN3-211ENST00000564091 B3GNTL1Q67FW5 361 aaPredicted RBP16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms