RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 ZG16O60844 167 aa15.69■□□□□ 0.1
CLN3-208ENST00000561505 FDXRP22570 491 aa15.69■□□□□ 0.1
CLN3-208ENST00000561505 OR1D4P47884 311 aa15.69■□□□□ 0.1
CLN3-208ENST00000561505 KLC1Q07866 573 aa15.69■□□□□ 0.1
CLN3-208ENST00000561505 SF1Q15637 639 aaKnown RBP15.69■□□□□ 0.1
CLN3-208ENST00000561505 OASLQ15646 514 aaKnown RBP15.69■□□□□ 0.1
CLN3-208ENST00000561505 INAQ16352 499 aa15.69■□□□□ 0.1
CLN3-208ENST00000561505 RBBP7Q16576 425 aa15.69■□□□□ 0.1
CLN3-208ENST00000561505 SKOR2Q2VWA4 1001 aaPredicted RBP15.69■□□□□ 0.1
CLN3-208ENST00000561505 PRTGQ2VWP7 1150 aa15.69■□□□□ 0.1
CLN3-208ENST00000561505 WASHC2DQ5SRD0 308 aa15.69■□□□□ 0.1
CLN3-208ENST00000561505 IRAK1BP1Q5VVH5 260 aa15.69■□□□□ 0.1
CLN3-208ENST00000561505 SP5Q6BEB4 398 aaPredicted RBP15.69■□□□□ 0.1
CLN3-208ENST00000561505 RNF44Q7L0R7 432 aa15.69■□□□□ 0.1
CLN3-208ENST00000561505 TTC29Q8NA56 475 aaPredicted RBP15.69■□□□□ 0.1
CLN3-208ENST00000561505 STT3BQ8TCJ2 826 aa15.69■□□□□ 0.1
CLN3-208ENST00000561505 RAD51AP1Q96B01 352 aa15.69■□□□□ 0.1
CLN3-208ENST00000561505 SELENOSQ9BQE4 189 aa15.69■□□□□ 0.1
CLN3-208ENST00000561505 TSSK1BQ9BXA7 367 aa15.69■□□□□ 0.1
CLN3-208ENST00000561505 SOX17Q9H6I2 414 aaPredicted RBP15.69■□□□□ 0.1
CLN3-208ENST00000561505 ZNF304Q9HCX3 659 aa15.69■□□□□ 0.1
CLN3-208ENST00000561505 IRAK4Q9NWZ3 460 aa15.69■□□□□ 0.1
CLN3-208ENST00000561505 TCRBV7S2A1N4TA0A589 114 aa15.68■□□□□ 0.1
CLN3-208ENST00000561505 HYKKA2RU49 373 aa15.68■□□□□ 0.1
CLN3-208ENST00000561505 OR2A25A4D2G3 310 aa15.68■□□□□ 0.1
CLN3-208ENST00000561505 MIF4GDA9UHW6 222 aaKnown RBP15.68■□□□□ 0.1
CLN3-208ENST00000561505 PRMT5O14744 637 aaPredicted RBP15.68■□□□□ 0.1
CLN3-208ENST00000561505 C1orf105O95561 183 aa15.68■□□□□ 0.1
CLN3-208ENST00000561505 APOA4P06727 396 aa15.68■□□□□ 0.1
CLN3-208ENST00000561505 ZGLP1P0C6A0 271 aa15.68■□□□□ 0.1
CLN3-208ENST00000561505 ELAVL4P26378 380 aaKnown RBP15.68■□□□□ 0.1
CLN3-208ENST00000561505 PPARGP37231 505 aaPredicted RBP15.68■□□□□ 0.1
CLN3-208ENST00000561505 GRIA1P42261 906 aa15.68■□□□□ 0.1
CLN3-208ENST00000561505 ART3Q13508 389 aa15.68■□□□□ 0.1
CLN3-208ENST00000561505 GBX1Q14549 363 aa15.68■□□□□ 0.1
CLN3-208ENST00000561505 FRMPD2BQ6IN97 320 aa15.68■□□□□ 0.1
CLN3-208ENST00000561505 ARHGEF39Q8N4T4 335 aa15.68■□□□□ 0.1
CLN3-208ENST00000561505 DTWD1Q8N5C7 304 aa15.68■□□□□ 0.1
CLN3-208ENST00000561505 BCORP1Q8N888 145 aa15.68■□□□□ 0.1
CLN3-208ENST00000561505 CATSPER1Q8NEC5 780 aa15.68■□□□□ 0.1
CLN3-208ENST00000561505 OR2L3Q8NG85 312 aa15.68■□□□□ 0.1
CLN3-208ENST00000561505 MARVELD3Q96A59 401 aa15.68■□□□□ 0.1
CLN3-208ENST00000561505 MRFAP1L1Q96HT8 127 aa15.68■□□□□ 0.1
CLN3-208ENST00000561505 TAAR6Q96RI8 345 aa15.68■□□□□ 0.1
CLN3-208ENST00000561505 TSPY26PQ9H489 355 aa15.68■□□□□ 0.1
CLN3-208ENST00000561505 ETNK1Q9HBU6 452 aa15.68■□□□□ 0.1
CLN3-208ENST00000561505 CAMSAP3Q9P1Y5 1249 aaPredicted RBP15.68■□□□□ 0.1
CLN3-208ENST00000561505 KLF2Q9Y5W3 355 aaPredicted RBP15.68■□□□□ 0.1
CLN3-208ENST00000561505 ANKRD17O75179 2603 aaKnown RBP15.68■□□□□ 0.1
CLN3-208ENST00000561505 LOC105369274A0A096LPK9 316 aa15.67■□□□□ 0.1
CLN3-208ENST00000561505 LOC102723532A0A0G2JNH3 316 aa15.67■□□□□ 0.1
CLN3-208ENST00000561505 SOWAHDA6NJG2 315 aa15.67■□□□□ 0.1
CLN3-208ENST00000561505 IQCF5A8MTL0 148 aa15.67■□□□□ 0.1
CLN3-208ENST00000561505 JRKO75564 520 aa15.67■□□□□ 0.1
CLN3-208ENST00000561505 USP1O94782 785 aa15.67■□□□□ 0.1
CLN3-208ENST00000561505 ERGP11308 486 aa15.67■□□□□ 0.1
CLN3-208ENST00000561505 ACPPP15309 386 aa15.67■□□□□ 0.1
CLN3-208ENST00000561505 POU3F2P20265 443 aaPredicted RBP15.67■□□□□ 0.1
CLN3-208ENST00000561505 RPS3P23396 243 aaKnown RBP eCLIP15.67■□□□□ 0.13e-6■■□□□ 14
CLN3-208ENST00000561505 FDFT1P37268 417 aa15.67■□□□□ 0.1
CLN3-208ENST00000561505 TNFSF10P50591 281 aa15.67■□□□□ 0.1
CLN3-208ENST00000561505 FASTKD1Q53R41 847 aaKnown RBP15.67■□□□□ 0.1
CLN3-208ENST00000561505 FBXO42Q6P3S6 717 aa15.67■□□□□ 0.1
CLN3-208ENST00000561505 FAM180AQ6UWF9 173 aa15.67■□□□□ 0.1
CLN3-208ENST00000561505 SHISA6Q6ZSJ9 500 aa15.67■□□□□ 0.1
CLN3-208ENST00000561505 OR4N4Q8N0Y3 316 aa15.67■□□□□ 0.1
CLN3-208ENST00000561505 C2orf73Q8N5S3 287 aaPredicted RBP15.67■□□□□ 0.1
CLN3-208ENST00000561505 NR4A3Q92570 626 aa15.67■□□□□ 0.1
CLN3-208ENST00000561505 MVB12AQ96EY5 273 aa15.67■□□□□ 0.1
CLN3-208ENST00000561505 C10orf90Q96M02 699 aa15.67■□□□□ 0.1
CLN3-208ENST00000561505 CRB3Q9BUF7 120 aa15.67■□□□□ 0.1
CLN3-208ENST00000561505 TGIF2Q9GZN2 237 aa15.67■□□□□ 0.1
CLN3-208ENST00000561505 RNF32Q9H0A6 362 aa15.67■□□□□ 0.1
CLN3-208ENST00000561505 OLAHQ9NV23 265 aa15.67■□□□□ 0.1
CLN3-208ENST00000561505 ZNF282Q9UDV7 671 aaPredicted RBP15.67■□□□□ 0.1
CLN3-208ENST00000561505 AMFRQ9UKV5 643 aa15.67■□□□□ 0.1
CLN3-208ENST00000561505 SLC39A10Q9ULF5 831 aa15.67■□□□□ 0.1
CLN3-208ENST00000561505 TCAF1Q9Y4C2 921 aa15.67■□□□□ 0.1
CLN3-208ENST00000561505 MRFAP1Q9Y605 127 aa15.67■□□□□ 0.1
CLN3-208ENST00000561505 LOC102723996A0A087X1L8 192 aa15.66■□□□□ 0.1
CLN3-208ENST00000561505 KPNA5O15131 536 aa15.66■□□□□ 0.1
CLN3-208ENST00000561505 MATN4O95460 622 aa15.66■□□□□ 0.1
CLN3-208ENST00000561505 SERPINA7P05543 415 aa15.66■□□□□ 0.1
CLN3-208ENST00000561505 PRR35P0CG20 571 aa15.66■□□□□ 0.1
CLN3-208ENST00000561505 COX6A1P12074 109 aa15.66■□□□□ 0.1
CLN3-208ENST00000561505 TTPAP49638 278 aa15.66■□□□□ 0.1
CLN3-208ENST00000561505 CSE1LP55060 971 aaKnown RBP15.66■□□□□ 0.1
CLN3-208ENST00000561505 VSX2P58304 361 aaPredicted RBP15.66■□□□□ 0.1
CLN3-208ENST00000561505 RELAQ04206 551 aa15.66■□□□□ 0.1
CLN3-208ENST00000561505 CCSMST1Q4G0I0 132 aa15.66■□□□□ 0.1
CLN3-208ENST00000561505 AARS2Q5JTZ9 985 aaKnown RBP15.66■□□□□ 0.1
CLN3-208ENST00000561505 RAD9BQ6WBX8 426 aa15.66■□□□□ 0.1
CLN3-208ENST00000561505 RIPOR1Q6ZS17 1223 aa15.66■□□□□ 0.1
CLN3-208ENST00000561505 NDUFAF7Q7L592 441 aa15.66■□□□□ 0.1
CLN3-208ENST00000561505 LAPTM4BQ86VI4 370 aa15.66■□□□□ 0.1
CLN3-208ENST00000561505 KBTBD2Q8IY47 623 aa15.66■□□□□ 0.1
CLN3-208ENST00000561505 SRRM1Q8IYB3 904 aaKnown RBP15.66■□□□□ 0.1
CLN3-208ENST00000561505 MPP5Q8N3R9 675 aa15.66■□□□□ 0.1
CLN3-208ENST00000561505 DNAAF3Q8N9W5 541 aa15.66■□□□□ 0.1
CLN3-208ENST00000561505 MIEF2Q96C03 454 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms