RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 SUCOQ9UBS9 1254 aaKnown RBP12.51□□□□□ -0.41
SNX1-211ENST00000560829 CD300AQ9UGN4 299 aa12.51□□□□□ -0.41
SNX1-211ENST00000560829 CIDEBQ9UHD4 219 aa12.51□□□□□ -0.41
SNX1-211ENST00000560829 LEF1Q9UJU2 399 aaPredicted RBP12.51□□□□□ -0.41
SNX1-211ENST00000560829 COLQQ9Y215 455 aaPredicted RBP12.51□□□□□ -0.41
SNX1-211ENST00000560829 TCRBV21S2A2A0A5A6 115 aa12.5□□□□□ -0.41
SNX1-211ENST00000560829 C9JVG2 144 aa12.5□□□□□ -0.41
SNX1-211ENST00000560829 SOX1O00570 391 aaPredicted RBP12.5□□□□□ -0.41
SNX1-211ENST00000560829 MAN2B1O00754 1011 aa12.5□□□□□ -0.41
SNX1-211ENST00000560829 ACOT8O14734 319 aa12.5□□□□□ -0.41
SNX1-211ENST00000560829 PI15O43692 258 aa12.5□□□□□ -0.41
SNX1-211ENST00000560829 NPPAP01160 153 aa12.5□□□□□ -0.41
SNX1-211ENST00000560829 PRPS2P11908 318 aa12.5□□□□□ -0.41
SNX1-211ENST00000560829 MAT2AP31153 395 aaKnown RBP12.5□□□□□ -0.41
SNX1-211ENST00000560829 HSD17B2P37059 387 aa12.5□□□□□ -0.41
SNX1-211ENST00000560829 TPMTP51580 245 aa12.5□□□□□ -0.41
SNX1-211ENST00000560829 NEK2P51955 445 aa12.5□□□□□ -0.41
SNX1-211ENST00000560829 USP39Q53GS9 565 aaKnown RBP12.5□□□□□ -0.41
SNX1-211ENST00000560829 PYCR3Q53H96 274 aa12.5□□□□□ -0.41
SNX1-211ENST00000560829 SAMD4BQ5PRF9 694 aaKnown RBP12.5□□□□□ -0.41
SNX1-211ENST00000560829 C10orf62Q5T681 223 aaPredicted RBP12.5□□□□□ -0.41
SNX1-211ENST00000560829 FAM9CQ8IZT9 166 aa12.5□□□□□ -0.41
SNX1-211ENST00000560829 DPP10Q8N608 796 aa12.5□□□□□ -0.41
SNX1-211ENST00000560829 OR5AR1Q8NGP9 310 aa12.5□□□□□ -0.41
SNX1-211ENST00000560829 NEIL2Q969S2 332 aa12.5□□□□□ -0.41
SNX1-211ENST00000560829 MTFMTQ96DP5 389 aaKnown RBP12.5□□□□□ -0.41
SNX1-211ENST00000560829 SLC45A3Q96JT2 553 aa12.5□□□□□ -0.41
SNX1-211ENST00000560829 BRF2Q9HAW0 419 aa12.5□□□□□ -0.41
SNX1-211ENST00000560829 SPATA6Q9NWH7 488 aaPredicted RBP12.5□□□□□ -0.41
SNX1-211ENST00000560829 SPATA7Q9P0W8 599 aa12.5□□□□□ -0.41
SNX1-211ENST00000560829 USP36Q9P275 1121 aaKnown RBP12.5□□□□□ -0.41
SNX1-211ENST00000560829 BCAP29Q9UHQ4 241 aa12.5□□□□□ -0.41
SNX1-211ENST00000560829 PCDHGA11Q9Y5H2 935 aa12.5□□□□□ -0.41
SNX1-211ENST00000560829 EYSQ5T1H1 3165 aa12.49□□□□□ -0.41
SNX1-211ENST00000560829 KANSL1LA0AUZ9 987 aa12.49□□□□□ -0.41
SNX1-211ENST00000560829 SLC31A1O15431 190 aa12.49□□□□□ -0.41
SNX1-211ENST00000560829 IGLV3-19P01714 112 aa12.49□□□□□ -0.41
SNX1-211ENST00000560829 SLC35G4P0C7Q5 338 aa12.49□□□□□ -0.41
SNX1-211ENST00000560829 BCKDHAP12694 445 aa12.49□□□□□ -0.41
SNX1-211ENST00000560829 XRCC1P18887 633 aaPredicted RBP12.49□□□□□ -0.41
SNX1-211ENST00000560829 VARSP26640 1264 aaKnown RBP12.49□□□□□ -0.41
SNX1-211ENST00000560829 ACSL1P33121 698 aa12.49□□□□□ -0.41
SNX1-211ENST00000560829 AP2B1P63010 937 aa12.49□□□□□ -0.41
SNX1-211ENST00000560829 SLC34A1Q06495 639 aa12.49□□□□□ -0.41
SNX1-211ENST00000560829 CCDC6Q16204 474 aa12.49□□□□□ -0.41
SNX1-211ENST00000560829 SPATS1Q496A3 300 aa12.49□□□□□ -0.41
SNX1-211ENST00000560829 ATG9BQ674R7 924 aa12.49□□□□□ -0.41
SNX1-211ENST00000560829 SUSD1Q6UWL2 747 aa12.49□□□□□ -0.41
SNX1-211ENST00000560829 LAYNQ6UX15 382 aa12.49□□□□□ -0.41
SNX1-211ENST00000560829 CHST15Q7LFX5 561 aaPredicted RBP12.49□□□□□ -0.41
SNX1-211ENST00000560829 FAM124AQ86V42 546 aa12.49□□□□□ -0.41
SNX1-211ENST00000560829 TBC1D21Q8IYX1 336 aa12.49□□□□□ -0.41
SNX1-211ENST00000560829 ZNF687Q8N1G0 1237 aa12.49□□□□□ -0.41
SNX1-211ENST00000560829 VPS33AQ96AX1 596 aa12.49□□□□□ -0.41
SNX1-211ENST00000560829 LRRC58Q96CX6 371 aa12.49□□□□□ -0.41
SNX1-211ENST00000560829 ASB9Q96DX5 294 aa12.49□□□□□ -0.41
SNX1-211ENST00000560829 MENTQ9BUN1 341 aa12.49□□□□□ -0.41
SNX1-211ENST00000560829 EFCAB11Q9BUY7 163 aa12.49□□□□□ -0.41
SNX1-211ENST00000560829 EBF2Q9HAK2 575 aa12.49□□□□□ -0.41
SNX1-211ENST00000560829 SGK2Q9HBY8 427 aa12.49□□□□□ -0.41
SNX1-211ENST00000560829 FZD3Q9NPG1 666 aa12.49□□□□□ -0.41
SNX1-211ENST00000560829 CCDC177Q9NQR7 707 aaPredicted RBP12.49□□□□□ -0.41
SNX1-211ENST00000560829 ADA2Q9NZK5 511 aa12.49□□□□□ -0.41
SNX1-211ENST00000560829 STOML1Q9UBI4 398 aa12.49□□□□□ -0.41
SNX1-211ENST00000560829 PACSIN3Q9UKS6 424 aa12.49□□□□□ -0.41
SNX1-211ENST00000560829 DYRK1BQ9Y463 629 aa12.49□□□□□ -0.41
SNX1-211ENST00000560829 PRORSD1PA6NEY8 169 aa12.48□□□□□ -0.41
SNX1-211ENST00000560829 LRRC72A6NJI9 287 aa12.48□□□□□ -0.41
SNX1-211ENST00000560829 CHURC1-FNTBB4DL54 471 aa12.48□□□□□ -0.41
SNX1-211ENST00000560829 LATO43561 262 aa12.48□□□□□ -0.41
SNX1-211ENST00000560829 BCAS2O75934 225 aaPredicted RBP12.48□□□□□ -0.41
SNX1-211ENST00000560829 F5P12259 2224 aa12.48□□□□□ -0.41
SNX1-211ENST00000560829 ACP5P13686 325 aa12.48□□□□□ -0.41
SNX1-211ENST00000560829 MAPK1P28482 360 aa12.48□□□□□ -0.41
SNX1-211ENST00000560829 MS4A2Q01362 244 aa12.48□□□□□ -0.41
SNX1-211ENST00000560829 CTBSQ01459 385 aa12.48□□□□□ -0.41
SNX1-211ENST00000560829 PTGR1Q14914 329 aa12.48□□□□□ -0.41
SNX1-211ENST00000560829 MLF2Q15773 248 aaPredicted RBP12.48□□□□□ -0.41
SNX1-211ENST00000560829 CCDC85BQ15834 202 aaPredicted RBP12.48□□□□□ -0.41
SNX1-211ENST00000560829 CYP2A13Q16696 494 aa12.48□□□□□ -0.41
SNX1-211ENST00000560829 TIGD2Q4W5G0 525 aa12.48□□□□□ -0.41
SNX1-211ENST00000560829 PAGE3Q5JUK9 113 aa12.48□□□□□ -0.41
SNX1-211ENST00000560829 LCTLQ6UWM7 567 aa12.48□□□□□ -0.41
SNX1-211ENST00000560829 PRR23BQ6ZRT6 265 aa12.48□□□□□ -0.41
SNX1-211ENST00000560829 LIX1Q8N485 282 aa12.48□□□□□ -0.41
SNX1-211ENST00000560829 PHC3Q8NDX5 983 aa12.48□□□□□ -0.41
SNX1-211ENST00000560829 TRIT1Q9H3H1 467 aaKnown RBP12.48□□□□□ -0.41
SNX1-211ENST00000560829 CLMPQ9H6B4 373 aa12.48□□□□□ -0.41
SNX1-211ENST00000560829 S100A14Q9HCY8 104 aa12.48□□□□□ -0.41
SNX1-211ENST00000560829 CD93Q9NPY3 652 aa12.48□□□□□ -0.41
SNX1-211ENST00000560829 SUFUQ9UMX1 484 aa12.48□□□□□ -0.41
SNX1-211ENST00000560829 PSMD13Q9UNM6 376 aa12.48□□□□□ -0.41
SNX1-211ENST00000560829 ZNF839A8K0R7 811 aa12.48□□□□□ -0.41
SNX1-211ENST00000560829 FPGTO14772 594 aa12.48□□□□□ -0.41
SNX1-211ENST00000560829 MAP3K7O43318 606 aa12.48□□□□□ -0.41
SNX1-211ENST00000560829 C1GALT1C1LP0DN25 315 aa12.48□□□□□ -0.41
SNX1-211ENST00000560829 CHRNB1P11230 501 aa12.48□□□□□ -0.41
SNX1-211ENST00000560829 AMD1P17707 334 aa12.48□□□□□ -0.41
SNX1-211ENST00000560829 CD72P21854 359 aa12.48□□□□□ -0.41
SNX1-211ENST00000560829 HNRNPA2B1P22626 353 aaKnown RBP12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms