RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 PKMP14618 531 aaKnown RBP9.79□□□□□ -0.84
LDLR-214ENST00000560628 PAMP19021 973 aa9.79□□□□□ -0.84
LDLR-214ENST00000560628 CCNFP41002 786 aa9.79□□□□□ -0.84
LDLR-214ENST00000560628 GCGRP47871 477 aa9.79□□□□□ -0.84
LDLR-214ENST00000560628 CTBP1Q13363 440 aa9.79□□□□□ -0.84
LDLR-214ENST00000560628 DHX34Q14147 1143 aaKnown RBP9.79□□□□□ -0.84
LDLR-214ENST00000560628 GRM7Q14831 915 aa9.79□□□□□ -0.84
LDLR-214ENST00000560628 CYP2A13Q16696 494 aa9.79□□□□□ -0.84
LDLR-214ENST00000560628 TYSND1Q2T9J0 566 aa9.79□□□□□ -0.84
LDLR-214ENST00000560628 KLHL38Q2WGJ6 581 aa9.79□□□□□ -0.84
LDLR-214ENST00000560628 ANKRD20A4Q4UJ75 823 aa9.79□□□□□ -0.84
LDLR-214ENST00000560628 TCTE1Q5JU00 501 aa9.79□□□□□ -0.84
LDLR-214ENST00000560628 RNF187Q5TA31 235 aaPredicted RBP9.79□□□□□ -0.84
LDLR-214ENST00000560628 SLC6A19Q695T7 634 aa9.79□□□□□ -0.84
LDLR-214ENST00000560628 KIAA0930Q6ICG6 404 aaPredicted RBP9.79□□□□□ -0.84
LDLR-214ENST00000560628 FRMPD2BQ6IN97 320 aa9.79□□□□□ -0.84
LDLR-214ENST00000560628 FBXO42Q6P3S6 717 aa9.79□□□□□ -0.84
LDLR-214ENST00000560628 SUSD1Q6UWL2 747 aa9.79□□□□□ -0.84
LDLR-214ENST00000560628 CLEC18BQ6UXF7 455 aa9.79□□□□□ -0.84
LDLR-214ENST00000560628 CILP2Q8IUL8 1156 aa9.79□□□□□ -0.84
LDLR-214ENST00000560628 GALNT16Q8N428 558 aa9.79□□□□□ -0.84
LDLR-214ENST00000560628 TTC29Q8NA56 475 aaPredicted RBP9.79□□□□□ -0.84
LDLR-214ENST00000560628 Q8NA96 180 aa9.79□□□□□ -0.84
LDLR-214ENST00000560628 CLEC18CQ8NCF0 446 aa9.79□□□□□ -0.84
LDLR-214ENST00000560628 GALNT11Q8NCW6 608 aa9.79□□□□□ -0.84
LDLR-214ENST00000560628 OR2L3Q8NG85 312 aa9.79□□□□□ -0.84
LDLR-214ENST00000560628 OR2A1Q8NGT9 310 aa9.79□□□□□ -0.84
LDLR-214ENST00000560628 OR9A1PQ8NGU1 263 aa9.79□□□□□ -0.84
LDLR-214ENST00000560628 MAGEC3Q8TD91 643 aa9.79□□□□□ -0.84
LDLR-214ENST00000560628 COL26A1Q96A83 441 aa9.79□□□□□ -0.84
LDLR-214ENST00000560628 ZNF669Q96BR6 464 aaPredicted RBP9.79□□□□□ -0.84
LDLR-214ENST00000560628 C19orf60Q96EN9 201 aa9.79□□□□□ -0.84
LDLR-214ENST00000560628 SLC30A3Q99726 388 aa9.79□□□□□ -0.84
LDLR-214ENST00000560628 SOX17Q9H6I2 414 aaPredicted RBP9.79□□□□□ -0.84
LDLR-214ENST00000560628 ATP13A2Q9NQ11 1180 aa9.79□□□□□ -0.84
LDLR-214ENST00000560628 SAMD15Q9P1V8 674 aa9.79□□□□□ -0.84
LDLR-214ENST00000560628 ZC3H7BQ9UGR2 993 aaKnown RBP9.79□□□□□ -0.84
LDLR-214ENST00000560628 CDC23Q9UJX2 597 aa9.79□□□□□ -0.84
LDLR-214ENST00000560628 MRFAP1Q9Y605 127 aa9.79□□□□□ -0.84
LDLR-214ENST00000560628 HECTD1Q9ULT8 2610 aa9.79□□□□□ -0.84
LDLR-214ENST00000560628 FER1L5A0AVI2 2057 aa9.78□□□□□ -0.84
LDLR-214ENST00000560628 HYKKA2RU49 373 aa9.78□□□□□ -0.84
LDLR-214ENST00000560628 BLACEA4D250 179 aa9.78□□□□□ -0.84
LDLR-214ENST00000560628 ARHGEF33A8MVX0 844 aa9.78□□□□□ -0.84
LDLR-214ENST00000560628 E5RI56 91 aa9.78□□□□□ -0.84
LDLR-214ENST00000560628 SRPX2O60687 465 aaPredicted RBP9.78□□□□□ -0.84
LDLR-214ENST00000560628 IGHEP01854 428 aa9.78□□□□□ -0.84
LDLR-214ENST00000560628 OGNP20774 298 aaKnown RBP9.78□□□□□ -0.84
LDLR-214ENST00000560628 COILP38432 576 aaPredicted RBP9.78□□□□□ -0.84
LDLR-214ENST00000560628 MAGEA6P43360 314 aa9.78□□□□□ -0.84
LDLR-214ENST00000560628 THOC5Q13769 683 aaKnown RBP9.78□□□□□ -0.84
LDLR-214ENST00000560628 GBX1Q14549 363 aa9.78□□□□□ -0.84
LDLR-214ENST00000560628 MYBPC3Q14896 1274 aa9.78□□□□□ -0.84
LDLR-214ENST00000560628 NKG7Q16617 165 aa9.78□□□□□ -0.84
LDLR-214ENST00000560628 FAM214AQ32MH5 1076 aa9.78□□□□□ -0.84
LDLR-214ENST00000560628 EEF1AKMT2Q5JPI9 291 aaKnown RBP9.78□□□□□ -0.84
LDLR-214ENST00000560628 VWA5B1Q5TIE3 1220 aa9.78□□□□□ -0.84
LDLR-214ENST00000560628 ZNF470Q6ECI4 717 aa9.78□□□□□ -0.84
LDLR-214ENST00000560628 COX15Q7KZN9 410 aa9.78□□□□□ -0.84
LDLR-214ENST00000560628 DENND6AQ8IWF6 608 aa9.78□□□□□ -0.84
LDLR-214ENST00000560628 PRSS58Q8IYP2 241 aa9.78□□□□□ -0.84
LDLR-214ENST00000560628 RASGEF1CQ8N431 466 aa9.78□□□□□ -0.84
LDLR-214ENST00000560628 CISD2Q8N5K1 135 aaKnown RBP9.78□□□□□ -0.84
LDLR-214ENST00000560628 HMGCLL1Q8TB92 370 aa9.78□□□□□ -0.84
LDLR-214ENST00000560628 PNPLA2Q96AD5 504 aa9.78□□□□□ -0.84
LDLR-214ENST00000560628 PBKQ96KB5 322 aa9.78□□□□□ -0.84
LDLR-214ENST00000560628 ZNF285Q96NJ3 590 aa9.78□□□□□ -0.84
LDLR-214ENST00000560628 PKP4Q99569 1192 aa9.78□□□□□ -0.84
LDLR-214ENST00000560628 DPH7Q9BTV6 452 aa9.78□□□□□ -0.84
LDLR-214ENST00000560628 ZNF552Q9H707 407 aaPredicted RBP9.78□□□□□ -0.84
LDLR-214ENST00000560628 ZBTB20Q9HC78 741 aaPredicted RBP9.78□□□□□ -0.84
LDLR-214ENST00000560628 FBXO6Q9NRD1 293 aaPredicted RBP9.78□□□□□ -0.84
LDLR-214ENST00000560628 ABCF3Q9NUQ8 709 aa9.78□□□□□ -0.84
LDLR-214ENST00000560628 C5AR2Q9P296 337 aa9.78□□□□□ -0.84
LDLR-214ENST00000560628 CTSFQ9UBX1 484 aa9.78□□□□□ -0.84
LDLR-214ENST00000560628 FBXL4Q9UKA2 621 aa9.78□□□□□ -0.84
LDLR-214ENST00000560628 JRKLQ9Y4A0 524 aa9.78□□□□□ -0.84
LDLR-214ENST00000560628 MAD1L1Q9Y6D9 718 aa9.78□□□□□ -0.84
LDLR-214ENST00000560628 ZCWPW2A0A1B0GU75 182 aa9.77□□□□□ -0.85
LDLR-214ENST00000560628 FAM237BA0A1B0GVD1 139 aa9.77□□□□□ -0.85
LDLR-214ENST00000560628 MAGEB16A2A368 324 aa9.77□□□□□ -0.85
LDLR-214ENST00000560628 FITM1A5D6W6 292 aa9.77□□□□□ -0.85
LDLR-214ENST00000560628 TCP11X1B4DZS4 312 aa9.77□□□□□ -0.85
LDLR-214ENST00000560628 H0YGG7 62 aa9.77□□□□□ -0.85
LDLR-214ENST00000560628 AGPSO00116 658 aa9.77□□□□□ -0.85
LDLR-214ENST00000560628 NRDCO43847 1150 aa9.77□□□□□ -0.85
LDLR-214ENST00000560628 KIF5CO60282 957 aa9.77□□□□□ -0.85
LDLR-214ENST00000560628 USP1O94782 785 aa9.77□□□□□ -0.85
LDLR-214ENST00000560628 FKBP9O95302 570 aa9.77□□□□□ -0.85
LDLR-214ENST00000560628 ONECUT2O95948 504 aa9.77□□□□□ -0.85
LDLR-214ENST00000560628 ALBP02768 609 aa9.77□□□□□ -0.85
LDLR-214ENST00000560628 ALPPP05187 535 aa9.77□□□□□ -0.85
LDLR-214ENST00000560628 MLNP12872 115 aa9.77□□□□□ -0.85
LDLR-214ENST00000560628 MMP11P24347 488 aa9.77□□□□□ -0.85
LDLR-214ENST00000560628 ITGA3P26006 1051 aa9.77□□□□□ -0.85
LDLR-214ENST00000560628 CMPK1P30085 196 aa9.77□□□□□ -0.85
LDLR-214ENST00000560628 RPA3P35244 121 aaPredicted RBP9.77□□□□□ -0.85
LDLR-214ENST00000560628 CLCN7P51798 805 aa9.77□□□□□ -0.85
LDLR-214ENST00000560628 ADARP55265 1226 aaKnown RBP9.77□□□□□ -0.85
LDLR-214ENST00000560628 ARF3P61204 181 aaPredicted RBP9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms