RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 FOXJ2Q9P0K8 574 aa12.53□□□□□ -0.4
NEDD8-208ENST00000560427 B3GALT1Q9Y5Z6 326 aa12.53□□□□□ -0.4
NEDD8-208ENST00000560427 AKAP13Q12802 2813 aa12.52□□□□□ -0.4
NEDD8-208ENST00000560427 A0A087WV48 116 aa12.52□□□□□ -0.41
NEDD8-208ENST00000560427 HMX2A2RU54 273 aa12.52□□□□□ -0.41
NEDD8-208ENST00000560427 KRT87PA6NCN2 255 aa12.52□□□□□ -0.41
NEDD8-208ENST00000560427 NPEPPSL1A6NEC2 478 aa12.52□□□□□ -0.41
NEDD8-208ENST00000560427 AGRPO00253 132 aa12.52□□□□□ -0.41
NEDD8-208ENST00000560427 TLX3O43711 291 aaPredicted RBP12.52□□□□□ -0.41
NEDD8-208ENST00000560427 CCDC166P0CW27 439 aa12.52□□□□□ -0.41
NEDD8-208ENST00000560427 PVRP15151 417 aa12.52□□□□□ -0.41
NEDD8-208ENST00000560427 MAGP20916 626 aa12.52□□□□□ -0.41
NEDD8-208ENST00000560427 HRH2P25021 359 aa12.52□□□□□ -0.41
NEDD8-208ENST00000560427 EIF2S3P41091 472 aaKnown RBP12.52□□□□□ -0.41
NEDD8-208ENST00000560427 MAGEA12P43365 314 aa12.52□□□□□ -0.41
NEDD8-208ENST00000560427 PGGT1BP53609 377 aa12.52□□□□□ -0.41
NEDD8-208ENST00000560427 VSNL1P62760 191 aa12.52□□□□□ -0.41
NEDD8-208ENST00000560427 RELAQ04206 551 aa12.52□□□□□ -0.41
NEDD8-208ENST00000560427 FASTKQ14296 549 aaKnown RBP12.52□□□□□ -0.41
NEDD8-208ENST00000560427 SLC29A2Q14542 456 aa12.52□□□□□ -0.41
NEDD8-208ENST00000560427 ZC3H12BQ5HYM0 836 aaKnown RBP12.52□□□□□ -0.41
NEDD8-208ENST00000560427 MROH9Q5TGP6 573 aa12.52□□□□□ -0.41
NEDD8-208ENST00000560427 AGTRAPQ6RW13 159 aa12.52□□□□□ -0.41
NEDD8-208ENST00000560427 CMC1Q7Z7K0 106 aa12.52□□□□□ -0.41
NEDD8-208ENST00000560427 TRIM73Q86UV7 250 aa12.52□□□□□ -0.41
NEDD8-208ENST00000560427 TCAIMQ8N3R3 496 aa12.52□□□□□ -0.41
NEDD8-208ENST00000560427 C2orf73Q8N5S3 287 aaPredicted RBP12.52□□□□□ -0.41
NEDD8-208ENST00000560427 DCAKDQ8WVC6 231 aa12.52□□□□□ -0.41
NEDD8-208ENST00000560427 KCNE4Q8WWG9 221 aa12.52□□□□□ -0.41
NEDD8-208ENST00000560427 KIAA1191Q96A73 305 aa12.52□□□□□ -0.41
NEDD8-208ENST00000560427 ZNF501Q96CX3 271 aaPredicted RBP12.52□□□□□ -0.41
NEDD8-208ENST00000560427 MRRFQ96E11 262 aaKnown RBP12.52□□□□□ -0.41
NEDD8-208ENST00000560427 EPB41L4BQ9H329 900 aa12.52□□□□□ -0.41
NEDD8-208ENST00000560427 NMRAL1Q9HBL8 299 aa12.52□□□□□ -0.41
NEDD8-208ENST00000560427 APMAPQ9HDC9 416 aa12.52□□□□□ -0.41
NEDD8-208ENST00000560427 TLK1Q9UKI8 766 aa12.52□□□□□ -0.41
NEDD8-208ENST00000560427 ACOT9Q9Y305 439 aa12.52□□□□□ -0.41
NEDD8-208ENST00000560427 TMEM184BQ9Y519 407 aaPredicted RBP12.52□□□□□ -0.41
NEDD8-208ENST00000560427 TPRP12270 2363 aaKnown RBP12.51□□□□□ -0.41
NEDD8-208ENST00000560427 A0A096LPK6 155 aa12.51□□□□□ -0.41
NEDD8-208ENST00000560427 POC1B-GALNT4F8VUJ3 575 aa12.51□□□□□ -0.41
NEDD8-208ENST00000560427 CDC7O00311 574 aa12.51□□□□□ -0.41
NEDD8-208ENST00000560427 MT-ND3P03897 115 aa12.51□□□□□ -0.41
NEDD8-208ENST00000560427 ALDOAP04075 364 aaKnown RBP12.51□□□□□ -0.41
NEDD8-208ENST00000560427 ANXA5P08758 320 aa12.51□□□□□ -0.41
NEDD8-208ENST00000560427 SNRPAP09012 282 aaKnown RBP12.51□□□□□ -0.41
NEDD8-208ENST00000560427 LTA4HP09960 611 aaKnown RBP12.51□□□□□ -0.41
NEDD8-208ENST00000560427 CD1DP15813 335 aa12.51□□□□□ -0.41
NEDD8-208ENST00000560427 TYK2P29597 1187 aa12.51□□□□□ -0.41
NEDD8-208ENST00000560427 GRIA3P42263 894 aa12.51□□□□□ -0.41
NEDD8-208ENST00000560427 TBPL1P62380 186 aa12.51□□□□□ -0.41
NEDD8-208ENST00000560427 PRDX1Q06830 199 aaKnown RBP12.51□□□□□ -0.41
NEDD8-208ENST00000560427 BMPR2Q13873 1038 aa12.51□□□□□ -0.41
NEDD8-208ENST00000560427 CSHL1Q14406 222 aa12.51□□□□□ -0.41
NEDD8-208ENST00000560427 KCNAB1Q14722 419 aa12.51□□□□□ -0.41
NEDD8-208ENST00000560427 TSNQ15631 228 aaKnown RBP12.51□□□□□ -0.41
NEDD8-208ENST00000560427 KIF26BQ2KJY2 2108 aa12.51□□□□□ -0.41
NEDD8-208ENST00000560427 FAM83EQ2M2I3 478 aa12.51□□□□□ -0.41
NEDD8-208ENST00000560427 PRAMEF13Q5VWM6 474 aa12.51□□□□□ -0.41
NEDD8-208ENST00000560427 ICE2Q659A1 982 aa12.51□□□□□ -0.41
NEDD8-208ENST00000560427 CAPN13Q6MZZ7 669 aaPredicted RBP12.51□□□□□ -0.41
NEDD8-208ENST00000560427 ADGRD1Q6QNK2 874 aa12.51□□□□□ -0.41
NEDD8-208ENST00000560427 LRRC69Q6ZNQ3 347 aa12.51□□□□□ -0.41
NEDD8-208ENST00000560427 CDHR3Q6ZTQ4 885 aa12.51□□□□□ -0.41
NEDD8-208ENST00000560427 DTX1Q86Y01 620 aa12.51□□□□□ -0.41
NEDD8-208ENST00000560427 SPNS2Q8IVW8 549 aa12.51□□□□□ -0.41
NEDD8-208ENST00000560427 OR56A3Q8NH54 315 aa12.51□□□□□ -0.41
NEDD8-208ENST00000560427 STAG3L4Q8TBR4 150 aa12.51□□□□□ -0.41
NEDD8-208ENST00000560427 PMEPA1Q969W9 287 aa12.51□□□□□ -0.41
NEDD8-208ENST00000560427 MIPEPQ99797 713 aa12.51□□□□□ -0.41
NEDD8-208ENST00000560427 HAUS8Q9BT25 410 aa12.51□□□□□ -0.41
NEDD8-208ENST00000560427 SGPP1Q9BX95 441 aa12.51□□□□□ -0.41
NEDD8-208ENST00000560427 MRPS30Q9NP92 439 aaKnown RBP12.51□□□□□ -0.41
NEDD8-208ENST00000560427 ENAMQ9NRM1 1142 aa12.51□□□□□ -0.41
NEDD8-208ENST00000560427 TAC3Q9UHF0 121 aa12.51□□□□□ -0.41
NEDD8-208ENST00000560427 SERTAD3Q9UJW9 196 aa12.51□□□□□ -0.41
NEDD8-208ENST00000560427 IKZF3Q9UKT9 509 aa12.51□□□□□ -0.41
NEDD8-208ENST00000560427 ZMIZ1Q9ULJ6 1067 aa12.51□□□□□ -0.41
NEDD8-208ENST00000560427 PLCL2Q9UPR0 1127 aa12.51□□□□□ -0.41
NEDD8-208ENST00000560427 RAXQ9Y2V3 346 aa12.51□□□□□ -0.41
NEDD8-208ENST00000560427 PCDHB3Q9Y5E6 796 aa12.51□□□□□ -0.41
NEDD8-208ENST00000560427 APC2O95996 2303 aa12.51□□□□□ -0.41
NEDD8-208ENST00000560427 ASPMQ8IZT6 3477 aa12.51□□□□□ -0.41
NEDD8-208ENST00000560427 IQANK1A0A1B0GTG1 560 aa12.5□□□□□ -0.41
NEDD8-208ENST00000560427 OR2A25A4D2G3 310 aa12.5□□□□□ -0.41
NEDD8-208ENST00000560427 TAF4O00268 1085 aa12.5□□□□□ -0.41
NEDD8-208ENST00000560427 KERAO60938 352 aa12.5□□□□□ -0.41
NEDD8-208ENST00000560427 STK17BO94768 372 aa12.5□□□□□ -0.41
NEDD8-208ENST00000560427 DLGAP3O95886 979 aa12.5□□□□□ -0.41
NEDD8-208ENST00000560427 C2P06681 752 aa12.5□□□□□ -0.41
NEDD8-208ENST00000560427 COL6A2P12110 1019 aa12.5□□□□□ -0.41
NEDD8-208ENST00000560427 PSMB5P28074 263 aa12.5□□□□□ -0.41
NEDD8-208ENST00000560427 ATP1A2P50993 1020 aa12.5□□□□□ -0.41
NEDD8-208ENST00000560427 ITGA1P56199 1179 aa12.5□□□□□ -0.41
NEDD8-208ENST00000560427 RASA2Q15283 850 aa12.5□□□□□ -0.41
NEDD8-208ENST00000560427 TGFBIQ15582 683 aa12.5□□□□□ -0.41
NEDD8-208ENST00000560427 GPR19Q15760 415 aa12.5□□□□□ -0.41
NEDD8-208ENST00000560427 ZIC1Q15915 447 aa12.5□□□□□ -0.41
NEDD8-208ENST00000560427 THEMIS2Q5TEJ8 643 aa12.5□□□□□ -0.41
NEDD8-208ENST00000560427 KIAA1614Q5VZ46 1190 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms