RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 ZBTB20Q9HC78 741 aaPredicted RBP16.99■□□□□ 0.31
HDDC3-205ENST00000559898 TXLNGQ9NUQ3 528 aa16.99■□□□□ 0.31
HDDC3-205ENST00000559898 SLC17A6Q9P2U8 582 aa16.99■□□□□ 0.31
HDDC3-205ENST00000559898 MAU2Q9Y6X3 613 aa16.99■□□□□ 0.31
HDDC3-205ENST00000559898 DOPEY2Q9Y3R5 2298 aa16.99■□□□□ 0.31
HDDC3-205ENST00000559898 DOCK10Q96BY6 2186 aa16.98■□□□□ 0.31
HDDC3-205ENST00000559898 FAM237BA0A1B0GVD1 139 aa16.98■□□□□ 0.31
HDDC3-205ENST00000559898 SDR42E2A6NKP2 422 aa16.98■□□□□ 0.31
HDDC3-205ENST00000559898 AP3B1O00203 1094 aa16.98■□□□□ 0.31
HDDC3-205ENST00000559898 PGRMC1O00264 195 aaKnown RBP16.98■□□□□ 0.31
HDDC3-205ENST00000559898 KDM1AO60341 852 aa16.98■□□□□ 0.31
HDDC3-205ENST00000559898 PHF2O75151 1096 aa16.98■□□□□ 0.31
HDDC3-205ENST00000559898 HAUS5O94927 633 aa16.98■□□□□ 0.31
HDDC3-205ENST00000559898 ESR1P03372 595 aa16.98■□□□□ 0.31
HDDC3-205ENST00000559898 FOLR3P41439 243 aa16.98■□□□□ 0.31
HDDC3-205ENST00000559898 TIAL1Q01085 375 aaKnown RBP eCLIP16.98■□□□□ 0.31
HDDC3-205ENST00000559898 SSPNQ14714 243 aa16.98■□□□□ 0.31
HDDC3-205ENST00000559898 CYP2A13Q16696 494 aa16.98■□□□□ 0.31
HDDC3-205ENST00000559898 FBXO42Q6P3S6 717 aa16.98■□□□□ 0.31
HDDC3-205ENST00000559898 IGDCC3Q8IVU1 814 aa16.98■□□□□ 0.31
HDDC3-205ENST00000559898 MCUQ8NE86 351 aa16.98■□□□□ 0.31
HDDC3-205ENST00000559898 OR2Y1Q8NGV0 311 aa16.98■□□□□ 0.31
HDDC3-205ENST00000559898 HMGCLL1Q8TB92 370 aa16.98■□□□□ 0.31
HDDC3-205ENST00000559898 TCF12Q99081 682 aa16.98■□□□□ 0.31
HDDC3-205ENST00000559898 SELENOSQ9BQE4 189 aa16.98■□□□□ 0.31
HDDC3-205ENST00000559898 NDC1Q9BTX1 674 aa16.98■□□□□ 0.31
HDDC3-205ENST00000559898 GRPEL1Q9HAV7 217 aa16.98■□□□□ 0.31
HDDC3-205ENST00000559898 CUTCQ9NTM9 273 aa16.98■□□□□ 0.31
HDDC3-205ENST00000559898 CTSFQ9UBX1 484 aa16.98■□□□□ 0.31
HDDC3-205ENST00000559898 GPN3Q9UHW5 284 aaPredicted RBP16.98■□□□□ 0.31
HDDC3-205ENST00000559898 FFAR3O14843 346 aa16.97■□□□□ 0.31
HDDC3-205ENST00000559898 KPNA5O15131 536 aa16.97■□□□□ 0.31
HDDC3-205ENST00000559898 GPR42O15529 346 aa16.97■□□□□ 0.31
HDDC3-205ENST00000559898 PSIP1O75475 530 aaKnown RBP16.97■□□□□ 0.31
HDDC3-205ENST00000559898 USP1O94782 785 aa16.97■□□□□ 0.31
HDDC3-205ENST00000559898 SORBS2O94875 1100 aaKnown RBP16.97■□□□□ 0.31
HDDC3-205ENST00000559898 ERGP11308 486 aa16.97■□□□□ 0.31
HDDC3-205ENST00000559898 MLNP12872 115 aa16.97■□□□□ 0.31
HDDC3-205ENST00000559898 ADARP55265 1226 aaKnown RBP16.97■□□□□ 0.31
HDDC3-205ENST00000559898 WASHC2DQ5SRD0 308 aa16.97■□□□□ 0.31
HDDC3-205ENST00000559898 RNASEH2BQ5TBB1 312 aaKnown RBP16.97■□□□□ 0.31
HDDC3-205ENST00000559898 CYHR1Q6ZMK1 362 aa16.97■□□□□ 0.31
HDDC3-205ENST00000559898 RAB43Q86YS6 212 aa16.97■□□□□ 0.31
HDDC3-205ENST00000559898 OR9A1PQ8NGU1 263 aa16.97■□□□□ 0.31
HDDC3-205ENST00000559898 GSDMBQ8TAX9 411 aa16.97■□□□□ 0.31
HDDC3-205ENST00000559898 SLC22A18Q96BI1 424 aa16.97■□□□□ 0.31
HDDC3-205ENST00000559898 SPSB2Q99619 263 aa16.97■□□□□ 0.31
HDDC3-205ENST00000559898 DHRS4Q9BTZ2 278 aa16.97■□□□□ 0.31
HDDC3-205ENST00000559898 DDX47Q9H0S4 455 aaKnown RBP16.97■□□□□ 0.31
HDDC3-205ENST00000559898 SOX17Q9H6I2 414 aaPredicted RBP16.97■□□□□ 0.31
HDDC3-205ENST00000559898 PLAC1Q9HBJ0 212 aa16.97■□□□□ 0.31
HDDC3-205ENST00000559898 ABCF3Q9NUQ8 709 aa16.97■□□□□ 0.31
HDDC3-205ENST00000559898 P4HTMQ9NXG6 502 aa16.97■□□□□ 0.31
HDDC3-205ENST00000559898 SAMD15Q9P1V8 674 aa16.97■□□□□ 0.31
HDDC3-205ENST00000559898 SRPK3Q9UPE1 567 aa16.97■□□□□ 0.31
HDDC3-205ENST00000559898 MAD1L1Q9Y6D9 718 aa16.97■□□□□ 0.31
HDDC3-205ENST00000559898 A0A1B0GX78 115 aa16.96■□□□□ 0.31
HDDC3-205ENST00000559898 CTAGE9A4FU28 777 aa16.96■□□□□ 0.31
HDDC3-205ENST00000559898 CLEC18AA5D8T8 446 aa16.96■□□□□ 0.31
HDDC3-205ENST00000559898 DSCR3O14972 297 aa16.96■□□□□ 0.31
HDDC3-205ENST00000559898 STATHP02808 62 aa16.96■□□□□ 0.31
HDDC3-205ENST00000559898 SARNPP82979 210 aaKnown RBP16.96■□□□□ 0.31
HDDC3-205ENST00000559898 TSTA3Q13630 321 aaPredicted RBP16.96■□□□□ 0.31
HDDC3-205ENST00000559898 NKG7Q16617 165 aa16.96■□□□□ 0.31
HDDC3-205ENST00000559898 DCAF10Q5QP82 559 aa16.96■□□□□ 0.31
HDDC3-205ENST00000559898 RNF187Q5TA31 235 aaPredicted RBP16.96■□□□□ 0.31
HDDC3-205ENST00000559898 JMJD6Q6NYC1 403 aaPredicted RBP16.96■□□□□ 0.31
HDDC3-205ENST00000559898 TTC23LQ6PF05 361 aa16.96■□□□□ 0.31
HDDC3-205ENST00000559898 CLEC18BQ6UXF7 455 aa16.96■□□□□ 0.31
HDDC3-205ENST00000559898 MED25Q71SY5 747 aa16.96■□□□□ 0.31
HDDC3-205ENST00000559898 TMEM102Q8N9M5 508 aaPredicted RBP16.96■□□□□ 0.31
HDDC3-205ENST00000559898 CLEC18CQ8NCF0 446 aa16.96■□□□□ 0.31
HDDC3-205ENST00000559898 ACTRT1Q8TDG2 376 aa16.96■□□□□ 0.31
HDDC3-205ENST00000559898 DLG3Q92796 817 aa16.96■□□□□ 0.31
HDDC3-205ENST00000559898 C10orf90Q96M02 699 aa16.96■□□□□ 0.31
HDDC3-205ENST00000559898 NDNQ99608 321 aa16.96■□□□□ 0.31
HDDC3-205ENST00000559898 GPR21Q99679 349 aa16.96■□□□□ 0.31
HDDC3-205ENST00000559898 DPH7Q9BTV6 452 aa16.96■□□□□ 0.31
HDDC3-205ENST00000559898 IARS2Q9NSE4 1012 aaKnown RBP16.96■□□□□ 0.31
HDDC3-205ENST00000559898 C20orf96Q9NUD7 363 aaPredicted RBP16.96■□□□□ 0.31
HDDC3-205ENST00000559898 SPATA7Q9P0W8 599 aa16.96■□□□□ 0.31
HDDC3-205ENST00000559898 ZC3H7BQ9UGR2 993 aaKnown RBP16.96■□□□□ 0.31
HDDC3-205ENST00000559898 SNX12Q9UMY4 172 aa16.96■□□□□ 0.31
HDDC3-205ENST00000559898 PADI2Q9Y2J8 665 aa16.96■□□□□ 0.31
HDDC3-205ENST00000559898 OR2A25A4D2G3 310 aa16.95■□□□□ 0.3
HDDC3-205ENST00000559898 FITM1A5D6W6 292 aa16.95■□□□□ 0.3
HDDC3-205ENST00000559898 TTLL8A6PVC2 850 aa16.95■□□□□ 0.3
HDDC3-205ENST00000559898 E5RI56 91 aa16.95■□□□□ 0.3
HDDC3-205ENST00000559898 MYO1CO00159 1063 aa16.95■□□□□ 0.3
HDDC3-205ENST00000559898 SOCS6O14544 535 aa16.95■□□□□ 0.3
HDDC3-205ENST00000559898 EIF2S1P05198 315 aaKnown RBP16.95■□□□□ 0.3
HDDC3-205ENST00000559898 PAMP19021 973 aa16.95■□□□□ 0.3
HDDC3-205ENST00000559898 GNLYP22749 145 aa16.95■□□□□ 0.3
HDDC3-205ENST00000559898 GABRB3P28472 473 aa16.95■□□□□ 0.3
HDDC3-205ENST00000559898 ATP5DP30049 168 aa16.95■□□□□ 0.3
HDDC3-205ENST00000559898 DHX9Q08211 1270 aaKnown RBP16.95■□□□□ 0.3
HDDC3-205ENST00000559898 HSP90AA5PQ58FG0 334 aa16.95■□□□□ 0.3
HDDC3-205ENST00000559898 HP1BP3Q5SSJ5 553 aaPredicted RBP16.95■□□□□ 0.3
HDDC3-205ENST00000559898 SLC6A19Q695T7 634 aa16.95■□□□□ 0.3
HDDC3-205ENST00000559898 RNF44Q7L0R7 432 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms