RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 TNFRSF8P28908 595 aa8.77□□□□□ -1.01
HDDC3-204ENST00000559834 CCNFP41002 786 aa8.77□□□□□ -1.01
HDDC3-204ENST00000559834 TTPAP49638 278 aa8.77□□□□□ -1.01
HDDC3-204ENST00000559834 GDF10P55107 478 aa8.77□□□□□ -1.01
HDDC3-204ENST00000559834 VSX2P58304 361 aaPredicted RBP8.77□□□□□ -1.01
HDDC3-204ENST00000559834 ARG2P78540 354 aa8.77□□□□□ -1.01
HDDC3-204ENST00000559834 ACVR1Q04771 509 aa8.77□□□□□ -1.01
HDDC3-204ENST00000559834 MUM1Q2TAK8 710 aa8.77□□□□□ -1.01
HDDC3-204ENST00000559834 LINC00696Q6ZRV3 163 aa8.77□□□□□ -1.01
HDDC3-204ENST00000559834 MICALCLQ6ZW33 695 aa8.77□□□□□ -1.01
HDDC3-204ENST00000559834 COX15Q7KZN9 410 aa8.77□□□□□ -1.01
HDDC3-204ENST00000559834 KIAA1328Q86T90 577 aa8.77□□□□□ -1.01
HDDC3-204ENST00000559834 TAX1BP1Q86VP1 789 aa8.77□□□□□ -1.01
HDDC3-204ENST00000559834 LRRC6Q86X45 466 aa8.77□□□□□ -1.01
HDDC3-204ENST00000559834 VRK3Q8IV63 474 aa8.77□□□□□ -1.01
HDDC3-204ENST00000559834 TMEM151BQ8IW70 566 aa8.77□□□□□ -1.01
HDDC3-204ENST00000559834 KBTBD2Q8IY47 623 aa8.77□□□□□ -1.01
HDDC3-204ENST00000559834 SRRM1Q8IYB3 904 aaKnown RBP8.77□□□□□ -1.01
HDDC3-204ENST00000559834 LRRC57Q8N9N7 239 aa8.77□□□□□ -1.01
HDDC3-204ENST00000559834 OR1N1Q8NGS0 311 aa8.77□□□□□ -1.01
HDDC3-204ENST00000559834 SLC35B2Q8TB61 432 aa8.77□□□□□ -1.01
HDDC3-204ENST00000559834 SKA2Q8WVK7 121 aaPredicted RBP8.77□□□□□ -1.01
HDDC3-204ENST00000559834 ZDHHC19Q8WVZ1 309 aaPredicted RBP8.77□□□□□ -1.01
HDDC3-204ENST00000559834 MIEF2Q96C03 454 aa8.77□□□□□ -1.01
HDDC3-204ENST00000559834 IL17FQ96PD4 163 aa8.77□□□□□ -1.01
HDDC3-204ENST00000559834 MENTQ9BUN1 341 aa8.77□□□□□ -1.01
HDDC3-204ENST00000559834 FRMD8P1Q9BZ68 369 aaPredicted RBP8.77□□□□□ -1.01
HDDC3-204ENST00000559834 ETNK1Q9HBU6 452 aa8.77□□□□□ -1.01
HDDC3-204ENST00000559834 OLAHQ9NV23 265 aa8.77□□□□□ -1.01
HDDC3-204ENST00000559834 CTSFQ9UBX1 484 aa8.77□□□□□ -1.01
HDDC3-204ENST00000559834 SLC2A6Q9UGQ3 507 aa8.77□□□□□ -1.01
HDDC3-204ENST00000559834 ZC3H7BQ9UGR2 993 aaKnown RBP8.77□□□□□ -1.01
HDDC3-204ENST00000559834 C3orf18Q9UK00 162 aa8.77□□□□□ -1.01
HDDC3-204ENST00000559834 TTC7AQ9ULT0 858 aaPredicted RBP8.77□□□□□ -1.01
HDDC3-204ENST00000559834 CSAG2Q9Y5P2 127 aa8.77□□□□□ -1.01
HDDC3-204ENST00000559834 MAU2Q9Y6X3 613 aa8.77□□□□□ -1.01
HDDC3-204ENST00000559834 DOPEY1Q5JWR5 2465 aa8.77□□□□□ -1.01
HDDC3-204ENST00000559834 DIDO1Q9BTC0 2240 aaKnown RBP8.77□□□□□ -1.01
HDDC3-204ENST00000559834 UNC79Q9P2D8 2635 aa8.77□□□□□ -1.01
HDDC3-204ENST00000559834 FER1L5A0AVI2 2057 aa8.76□□□□□ -1.01
HDDC3-204ENST00000559834 MYO9AB2RTY4 2548 aa8.76□□□□□ -1.01
HDDC3-204ENST00000559834 NSG1A0A0A6YYJ2 146 aa8.76□□□□□ -1.01
HDDC3-204ENST00000559834 TRAV17A0A0B4J275 112 aa8.76□□□□□ -1.01
HDDC3-204ENST00000559834 A0A0J9YVX5 310 aa8.76□□□□□ -1.01
HDDC3-204ENST00000559834 GRID2IPA4D2P6 1211 aa8.76□□□□□ -1.01
HDDC3-204ENST00000559834 SOWAHDA6NJG2 315 aa8.76□□□□□ -1.01
HDDC3-204ENST00000559834 IQCF5A8MTL0 148 aa8.76□□□□□ -1.01
HDDC3-204ENST00000559834 AP3B1O00203 1094 aa8.76□□□□□ -1.01
HDDC3-204ENST00000559834 PCDH17O14917 1159 aa8.76□□□□□ -1.01
HDDC3-204ENST00000559834 CD3EAPO15446 510 aaKnown RBP8.76□□□□□ -1.01
HDDC3-204ENST00000559834 PRPF4O43172 522 aaKnown RBP eCLIP8.76□□□□□ -1.01
HDDC3-204ENST00000559834 PRICKLE3O43900 615 aaPredicted RBP8.76□□□□□ -1.01
HDDC3-204ENST00000559834 KLHL18O94889 574 aa8.76□□□□□ -1.01
HDDC3-204ENST00000559834 C1orf105O95561 183 aa8.76□□□□□ -1.01
HDDC3-204ENST00000559834 IFNB1P01574 187 aa8.76□□□□□ -1.01
HDDC3-204ENST00000559834 EIF2S1P05198 315 aaKnown RBP8.76□□□□□ -1.01
HDDC3-204ENST00000559834 ZGLP1P0C6A0 271 aa8.76□□□□□ -1.01
HDDC3-204ENST00000559834 ERVK-10P10266 1014 aa8.76□□□□□ -1.01
HDDC3-204ENST00000559834 EMP3P54852 163 aa8.76□□□□□ -1.01
HDDC3-204ENST00000559834 AP2B1P63010 937 aa8.76□□□□□ -1.01
HDDC3-204ENST00000559834 KLC1Q07866 573 aa8.76□□□□□ -1.01
HDDC3-204ENST00000559834 KIF5AQ12840 1032 aa8.76□□□□□ -1.01
HDDC3-204ENST00000559834 KLF1Q13351 362 aaPredicted RBP8.76□□□□□ -1.01
HDDC3-204ENST00000559834 GRB7Q14451 532 aa8.76□□□□□ -1.01
HDDC3-204ENST00000559834 PCID2Q5JVF3 399 aa8.76□□□□□ -1.01
HDDC3-204ENST00000559834 ATG9BQ674R7 924 aa8.76□□□□□ -1.01
HDDC3-204ENST00000559834 NDUFAF7Q7L592 441 aa8.76□□□□□ -1.01
HDDC3-204ENST00000559834 OTOAQ7RTW8 1153 aa8.76□□□□□ -1.01
HDDC3-204ENST00000559834 KRT222Q8N1A0 295 aa8.76□□□□□ -1.01
HDDC3-204ENST00000559834 CATSPER1Q8NEC5 780 aa8.76□□□□□ -1.01
HDDC3-204ENST00000559834 PPHLN1Q8NEY8 458 aaKnown RBP8.76□□□□□ -1.01
HDDC3-204ENST00000559834 HMGCLL1Q8TB92 370 aa8.76□□□□□ -1.01
HDDC3-204ENST00000559834 STT3BQ8TCJ2 826 aa8.76□□□□□ -1.01
HDDC3-204ENST00000559834 HAS2Q92819 552 aa8.76□□□□□ -1.01
HDDC3-204ENST00000559834 RELTQ969Z4 430 aa8.76□□□□□ -1.01
HDDC3-204ENST00000559834 MARVELD3Q96A59 401 aa8.76□□□□□ -1.01
HDDC3-204ENST00000559834 MAGEB10Q96LZ2 347 aaPredicted RBP8.76□□□□□ -1.01
HDDC3-204ENST00000559834 MIPEPQ99797 713 aa8.76□□□□□ -1.01
HDDC3-204ENST00000559834 SLX1AQ9BQ83 275 aa8.76□□□□□ -1.01
HDDC3-204ENST00000559834 LACRTQ9GZZ8 138 aa8.76□□□□□ -1.01
HDDC3-204ENST00000559834 ZNF160Q9HCG1 818 aa8.76□□□□□ -1.01
HDDC3-204ENST00000559834 CATSPERZQ9NTU4 200 aa8.76□□□□□ -1.01
HDDC3-204ENST00000559834 UTP6Q9NYH9 597 aaKnown RBP8.76□□□□□ -1.01
HDDC3-204ENST00000559834 COPG2Q9UBF2 871 aa8.76□□□□□ -1.01
HDDC3-204ENST00000559834 CIDEBQ9UHD4 219 aa8.76□□□□□ -1.01
HDDC3-204ENST00000559834 GNPTGQ9UJJ9 305 aa8.76□□□□□ -1.01
HDDC3-204ENST00000559834 ZNF148Q9UQR1 794 aa8.76□□□□□ -1.01
HDDC3-204ENST00000559834 R3HDM2Q9Y2K5 976 aaKnown RBP8.76□□□□□ -1.01
HDDC3-204ENST00000559834 TCAF1Q9Y4C2 921 aa8.76□□□□□ -1.01
HDDC3-204ENST00000559834 KLK4Q9Y5K2 254 aa8.76□□□□□ -1.01
HDDC3-204ENST00000559834 TEX15Q9BXT5 2789 aa8.76□□□□□ -1.01
HDDC3-204ENST00000559834 DOCK10Q96BY6 2186 aa8.75□□□□□ -1.01
HDDC3-204ENST00000559834 SVILO95425 2214 aa8.75□□□□□ -1.01
HDDC3-204ENST00000559834 IGLV3-12A0A075B6K2 115 aa8.75□□□□□ -1.01
HDDC3-204ENST00000559834 ARHGAP10A1A4S6 786 aa8.75□□□□□ -1.01
HDDC3-204ENST00000559834 E2F3O00716 465 aa8.75□□□□□ -1.01
HDDC3-204ENST00000559834 PFDN6O15212 129 aa8.75□□□□□ -1.01
HDDC3-204ENST00000559834 ZG16O60844 167 aa8.75□□□□□ -1.01
HDDC3-204ENST00000559834 CTSVO60911 334 aa8.75□□□□□ -1.01
HDDC3-204ENST00000559834 PHF2O75151 1096 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms