RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 PRPF4O43172 522 aaKnown RBP eCLIP8.92□□□□□ -0.98
LDLR-210ENST00000559340 KLK8O60259 260 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 PLIN3O60664 434 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 H2AFYO75367 372 aaKnown RBP8.92□□□□□ -0.98
LDLR-210ENST00000559340 SPAG7O75391 227 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 C9P02748 559 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 NCF1P14598 390 aaPredicted RBP8.92□□□□□ -0.98
LDLR-210ENST00000559340 CPA3P15088 417 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 PRDX3P30048 256 aaKnown RBP8.92□□□□□ -0.98
LDLR-210ENST00000559340 MAGOHP61326 146 aaKnown RBP8.92□□□□□ -0.98
LDLR-210ENST00000559340 TAP2Q03519 686 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 SETDB1Q15047 1291 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 PCBP2Q15366 365 aaKnown RBP eCLIP8.92□□□□□ -0.98
LDLR-210ENST00000559340 PFKFB4Q16877 469 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 CCSMST1Q4G0I0 132 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 TMTC4Q5T4D3 741 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 HHATQ5VTY9 493 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 CACHD1Q5VU97 1274 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 PRAMEF13Q5VWM6 474 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 NKAIN2Q5VXU1 208 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 C16orf46Q6P387 395 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 SPESP1Q6UW49 350 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 LRRC70Q7Z2Q7 622 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 C17orf64Q86WR6 236 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 TMPRSS12Q86WS5 348 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 KLHDC8AQ8IYD2 350 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 GALNT15Q8N3T1 639 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 LMNTD1Q8N9Z9 388 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 TCP10LQ8TDR4 215 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 DENND1AQ8TEH3 1009 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 PPP4R1Q8TF05 950 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 JPH3Q8WXH2 748 aaPredicted RBP8.92□□□□□ -0.98
LDLR-210ENST00000559340 ZUFSPQ96AP4 578 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 TLCD1Q96CP7 247 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 MED8Q96G25 268 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 IL17FQ96PD4 163 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 TGM7Q96PF1 710 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 DEPDC7Q96QD5 511 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 MENTQ9BUN1 341 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 CD244Q9BZW8 370 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 ATG10Q9H0Y0 220 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 MRPS30Q9NP92 439 aaKnown RBP8.92□□□□□ -0.98
LDLR-210ENST00000559340 MED4Q9NPJ6 270 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 DNAJC11Q9NVH1 559 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 GPRC5BQ9NZH0 403 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 ANKMY1Q9P2S6 941 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 OPTCQ9UBM4 332 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 IKZF3Q9UKT9 509 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 POMT2Q9UKY4 750 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 SNX7Q9UNH6 387 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 STK38LQ9Y2H1 464 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 DMXL1Q9Y485 3027 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 MN1Q10571 1320 aaPredicted RBP8.91□□□□□ -0.98
LDLR-210ENST00000559340 A0A0J9YY10 115 aa8.91□□□□□ -0.98
LDLR-210ENST00000559340 SPAARA0A1B0GVQ0 90 aa8.91□□□□□ -0.98
LDLR-210ENST00000559340 A0A1W2PQM1 296 aa8.91□□□□□ -0.98
LDLR-210ENST00000559340 TARM1B6A8C7 271 aa8.91□□□□□ -0.98
LDLR-210ENST00000559340 D6RAR5 112 aa8.91□□□□□ -0.98
LDLR-210ENST00000559340 H3BQF6 201 aa8.91□□□□□ -0.98
LDLR-210ENST00000559340 K7EPI3 171 aa8.91□□□□□ -0.98
LDLR-210ENST00000559340 GIPC1O14908 333 aa8.91□□□□□ -0.98
LDLR-210ENST00000559340 TYROBPO43914 113 aa8.91□□□□□ -0.98
LDLR-210ENST00000559340 CCNT2O60583 730 aaKnown RBP8.91□□□□□ -0.98
LDLR-210ENST00000559340 KATNA1O75449 491 aa8.91□□□□□ -0.98
LDLR-210ENST00000559340 RASSF9O75901 435 aa8.91□□□□□ -0.98
LDLR-210ENST00000559340 WDR47O94967 919 aa8.91□□□□□ -0.98
LDLR-210ENST00000559340 ZBTB11O95625 1053 aaPredicted RBP8.91□□□□□ -0.98
LDLR-210ENST00000559340 MT-CO3P00414 261 aa8.91□□□□□ -0.98
LDLR-210ENST00000559340 PROCP04070 461 aa8.91□□□□□ -0.98
LDLR-210ENST00000559340 NEFHP12036 1026 aa8.91□□□□□ -0.98
LDLR-210ENST00000559340 JUPP14923 745 aa8.91□□□□□ -0.98
LDLR-210ENST00000559340 EPB42P16452 691 aa8.91□□□□□ -0.98
LDLR-210ENST00000559340 UGT2B7P16662 529 aa8.91□□□□□ -0.98
LDLR-210ENST00000559340 CXCR2P25025 360 aa8.91□□□□□ -0.98
LDLR-210ENST00000559340 CSTF2P33240 577 aaKnown RBP eCLIP8.91□□□□□ -0.98
LDLR-210ENST00000559340 GRK3P35626 688 aa8.91□□□□□ -0.98
LDLR-210ENST00000559340 GMPRP36959 345 aa8.91□□□□□ -0.98
LDLR-210ENST00000559340 KCNC1P48547 511 aa8.91□□□□□ -0.98
LDLR-210ENST00000559340 INHBCP55103 352 aa8.91□□□□□ -0.98
LDLR-210ENST00000559340 NFKB2Q00653 900 aa8.91□□□□□ -0.98
LDLR-210ENST00000559340 PRDX1Q06830 199 aaKnown RBP8.91□□□□□ -0.98
LDLR-210ENST00000559340 PTCHD3Q3KNS1 767 aa8.91□□□□□ -0.98
LDLR-210ENST00000559340 CFAP157Q5JU67 520 aa8.91□□□□□ -0.98
LDLR-210ENST00000559340 ICE2Q659A1 982 aa8.91□□□□□ -0.98
LDLR-210ENST00000559340 ZYG11AQ6WRX3 759 aa8.91□□□□□ -0.98
LDLR-210ENST00000559340 PRSS42Q7Z5A4 293 aa8.91□□□□□ -0.98
LDLR-210ENST00000559340 SLCO6A1Q86UG4 719 aa8.91□□□□□ -0.98
LDLR-210ENST00000559340 TAX1BP1Q86VP1 789 aa8.91□□□□□ -0.98
LDLR-210ENST00000559340 THOC6Q86W42 341 aaKnown RBP8.91□□□□□ -0.98
LDLR-210ENST00000559340 LRRC56Q8IYG6 542 aaPredicted RBP8.91□□□□□ -0.98
LDLR-210ENST00000559340 C2orf73Q8N5S3 287 aaPredicted RBP8.91□□□□□ -0.98
LDLR-210ENST00000559340 PTGR2Q8N8N7 351 aaPredicted RBP8.91□□□□□ -0.98
LDLR-210ENST00000559340 LINC01555Q8NAE3 123 aa8.91□□□□□ -0.98
LDLR-210ENST00000559340 ARMC2Q8NEN0 867 aa8.91□□□□□ -0.98
LDLR-210ENST00000559340 UBTD2Q8WUN7 234 aa8.91□□□□□ -0.98
LDLR-210ENST00000559340 ADAMTS14Q8WXS8 1223 aa8.91□□□□□ -0.98
LDLR-210ENST00000559340 RSC1A1Q92681 617 aa8.91□□□□□ -0.98
LDLR-210ENST00000559340 MAGEB10Q96LZ2 347 aaPredicted RBP8.91□□□□□ -0.98
LDLR-210ENST00000559340 OR2A14Q96R47 310 aa8.91□□□□□ -0.98
LDLR-210ENST00000559340 SGPP1Q9BX95 441 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms