RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 TTC29Q8NA56 475 aaPredicted RBP8.37□□□□□ -1.07
USP3-208ENST00000558285 PROKR1Q8TCW9 393 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 MCOLN3Q8TDD5 553 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 ZNF473Q8WTR7 871 aaKnown RBP8.37□□□□□ -1.07
USP3-208ENST00000558285 SREK1Q8WXA9 508 aaKnown RBP8.37□□□□□ -1.07
USP3-208ENST00000558285 SMPDL3AQ92484 453 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 ZUFSPQ96AP4 578 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 CERS2Q96G23 380 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 KRT12Q99456 494 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 NDC1Q9BTX1 674 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 FAM129AQ9BZQ8 928 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 PCBD2Q9H0N5 130 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 ADNPQ9H2P0 1102 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 IL1RAPL1Q9NZN1 696 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 WHRNQ9P202 907 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 ANKMY1Q9P2S6 941 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 PLCL2Q9UPR0 1127 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 ICKQ9UPZ9 632 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 PCDHGA4Q9Y5G9 962 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 FAM208BQ5VWN6 2430 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 PMS2P1A4D2B8 440 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 CFAP73A6NFT4 308 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 TARM1B6A8C7 271 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 TMEM150CB9EJG8 249 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 TXNDC9O14530 226 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 TTI1O43156 1089 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 PRPF4O43172 522 aaKnown RBP eCLIP8.37□□□□□ -1.07
USP3-208ENST00000558285 SMNDC1O75940 238 aaKnown RBP eCLIP8.37□□□□□ -1.074e-9■■■□□ 17.4
USP3-208ENST00000558285 OR2B3O76000 313 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 C8GP07360 202 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 GSTA2P09210 222 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 EBLN1P0CF75 366 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 UGT2B7P16662 529 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 ITGAXP20702 1163 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 CCND1P24385 295 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 HRH2P25021 359 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 LSP1P33241 339 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 RPA3P35244 121 aaPredicted RBP8.37□□□□□ -1.07
USP3-208ENST00000558285 ITGA8P53708 1063 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 DHX9Q08211 1270 aaKnown RBP8.37□□□□□ -1.07
USP3-208ENST00000558285 SP140Q13342 867 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 SEMA3AQ14563 771 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 ZNF658BQ4V348 819 aaPredicted RBP8.37□□□□□ -1.07
USP3-208ENST00000558285 GLE1Q53GS7 698 aaKnown RBP8.37□□□□□ -1.07
USP3-208ENST00000558285 CNSTQ6PJW8 725 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 ADGRF3Q8IZF5 1079 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 GALNT6Q8NCL4 622 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 SPATA4Q8NEY3 305 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 HMGCLL1Q8TB92 370 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 PYROXD1Q8WU10 500 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 JPH3Q8WXH2 748 aaPredicted RBP8.37□□□□□ -1.07
USP3-208ENST00000558285 MR1Q95460 341 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 TSPAN17Q96FV3 270 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 CFAP36Q96G28 342 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 ELMO2Q96JJ3 720 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 SIGLEC10Q96LC7 697 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 IP6K3Q96PC2 410 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 ERP44Q9BS26 406 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 DHRS4Q9BTZ2 278 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 NLNQ9BYT8 704 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 PHACTR1Q9C0D0 580 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 IARS2Q9NSE4 1012 aaKnown RBP8.37□□□□□ -1.07
USP3-208ENST00000558285 PKD1L2Q7Z442 2459 aa8.36□□□□□ -1.07
USP3-208ENST00000558285 ZCWPW2A0A1B0GU75 182 aa8.36□□□□□ -1.07
USP3-208ENST00000558285 GOLGA6L10A6NI86 522 aa8.36□□□□□ -1.07
USP3-208ENST00000558285 HMGB1P1B2RPK0 211 aaPredicted RBP8.36□□□□□ -1.07
USP3-208ENST00000558285 GOLGA8TH3BQL2 631 aa8.36□□□□□ -1.07
USP3-208ENST00000558285 BTN3A3O00478 584 aa8.36□□□□□ -1.07
USP3-208ENST00000558285 CASC3O15234 703 aaKnown RBP8.36□□□□□ -1.07
USP3-208ENST00000558285 SLC16A5O15375 505 aa8.36□□□□□ -1.07
USP3-208ENST00000558285 SRPX2O60687 465 aaPredicted RBP8.36□□□□□ -1.07
USP3-208ENST00000558285 KATNA1O75449 491 aa8.36□□□□□ -1.07
USP3-208ENST00000558285 C1orf105O95561 183 aa8.36□□□□□ -1.07
USP3-208ENST00000558285 ERVK-10P10266 1014 aa8.36□□□□□ -1.07
USP3-208ENST00000558285 LIFP15018 202 aa8.36□□□□□ -1.07
USP3-208ENST00000558285 SLC1A2P43004 574 aa8.36□□□□□ -1.07
USP3-208ENST00000558285 PTGIRP43119 386 aa8.36□□□□□ -1.07
USP3-208ENST00000558285 PRSS12P56730 875 aa8.36□□□□□ -1.07
USP3-208ENST00000558285 SH3BP2P78314 561 aa8.36□□□□□ -1.07
USP3-208ENST00000558285 ABATP80404 500 aa8.36□□□□□ -1.07
USP3-208ENST00000558285 MGAT5Q09328 741 aa8.36□□□□□ -1.07
USP3-208ENST00000558285 PDIA2Q13087 525 aaKnown RBP8.36□□□□□ -1.07
USP3-208ENST00000558285 GRM7Q14831 915 aa8.36□□□□□ -1.07
USP3-208ENST00000558285 TGIF1Q15583 401 aa8.36□□□□□ -1.07
USP3-208ENST00000558285 FAM214AQ32MH5 1076 aa8.36□□□□□ -1.07
USP3-208ENST00000558285 FAM45BPQ6NSW5 357 aa8.36□□□□□ -1.07
USP3-208ENST00000558285 HIBCHQ6NVY1 386 aaPredicted RBP8.36□□□□□ -1.07
USP3-208ENST00000558285 SYVN1Q86TM6 617 aa8.36□□□□□ -1.07
USP3-208ENST00000558285 VASH2Q86V25 355 aa8.36□□□□□ -1.07
USP3-208ENST00000558285 SLC26A11Q86WA9 606 aa8.36□□□□□ -1.07
USP3-208ENST00000558285 MMGT1Q8N4V1 131 aa8.36□□□□□ -1.07
USP3-208ENST00000558285 ZNF655Q8N720 491 aaPredicted RBP8.36□□□□□ -1.07
USP3-208ENST00000558285 NOA1Q8NC60 698 aaKnown RBP8.36□□□□□ -1.07
USP3-208ENST00000558285 FBXO15Q8NCQ5 510 aaPredicted RBP8.36□□□□□ -1.07
USP3-208ENST00000558285 C2CD4AQ8NCU7 369 aaPredicted RBP8.36□□□□□ -1.07
USP3-208ENST00000558285 OR9A1PQ8NGU1 263 aa8.36□□□□□ -1.07
USP3-208ENST00000558285 FAM45AQ8TCE6 357 aa8.36□□□□□ -1.07
USP3-208ENST00000558285 MIPOL1Q8TD10 442 aa8.36□□□□□ -1.07
USP3-208ENST00000558285 ATL1Q8WXF7 558 aa8.36□□□□□ -1.07
USP3-208ENST00000558285 THAP4Q8WY91 577 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms