RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 PTPRCAPQ14761 206 aa9.66□□□□□ -0.86
SCFD1-220ENST00000556486 RNFT1Q5M7Z0 435 aa9.66□□□□□ -0.86
SCFD1-220ENST00000556486 ZNF385CQ66K41 422 aaPredicted RBP9.66□□□□□ -0.86
SCFD1-220ENST00000556486 KAZNQ674X7 775 aa9.66□□□□□ -0.86
SCFD1-220ENST00000556486 ARMC6Q6NXE6 501 aa9.66□□□□□ -0.86
SCFD1-220ENST00000556486 GDF7Q7Z4P5 450 aa9.66□□□□□ -0.86
SCFD1-220ENST00000556486 SNX20Q7Z614 316 aa9.66□□□□□ -0.86
SCFD1-220ENST00000556486 ZADH2Q8N4Q0 377 aa9.66□□□□□ -0.86
SCFD1-220ENST00000556486 FAM13CQ8NE31 585 aa9.66□□□□□ -0.86
SCFD1-220ENST00000556486 OR4K2Q8NGD2 314 aa9.66□□□□□ -0.86
SCFD1-220ENST00000556486 OR1L3Q8NH93 324 aa9.66□□□□□ -0.86
SCFD1-220ENST00000556486 COPS8Q99627 209 aa9.66□□□□□ -0.86
SCFD1-220ENST00000556486 FERMT1Q9BQL6 677 aa9.66□□□□□ -0.86
SCFD1-220ENST00000556486 OR52A5Q9H2C5 316 aa9.66□□□□□ -0.86
SCFD1-220ENST00000556486 ZNF552Q9H707 407 aaPredicted RBP9.66□□□□□ -0.86
SCFD1-220ENST00000556486 ACTR5Q9H9F9 607 aaPredicted RBP9.66□□□□□ -0.86
SCFD1-220ENST00000556486 FANCEQ9HB96 536 aa9.66□□□□□ -0.86
SCFD1-220ENST00000556486 AGPAT4Q9NRZ5 378 aa9.66□□□□□ -0.86
SCFD1-220ENST00000556486 PCMTD2Q9NV79 361 aa9.66□□□□□ -0.86
SCFD1-220ENST00000556486 SBDSQ9Y3A5 250 aaKnown RBP eCLIP9.66□□□□□ -0.86
SCFD1-220ENST00000556486 ANKRD34BA5PLL1 514 aa9.65□□□□□ -0.86
SCFD1-220ENST00000556486 SLC9B1P1A6NJY1 282 aa9.65□□□□□ -0.86
SCFD1-220ENST00000556486 H3BMH7 237 aa9.65□□□□□ -0.86
SCFD1-220ENST00000556486 PEX14O75381 377 aa9.65□□□□□ -0.86
SCFD1-220ENST00000556486 ALPPP05187 535 aa9.65□□□□□ -0.86
SCFD1-220ENST00000556486 TNNT1P13805 278 aa9.65□□□□□ -0.86
SCFD1-220ENST00000556486 ATP1B2P14415 290 aaPredicted RBP9.65□□□□□ -0.86
SCFD1-220ENST00000556486 PTMSP20962 102 aa9.65□□□□□ -0.86
SCFD1-220ENST00000556486 RBL1P28749 1068 aa9.65□□□□□ -0.86
SCFD1-220ENST00000556486 PRDX3P30048 256 aaKnown RBP9.65□□□□□ -0.86
SCFD1-220ENST00000556486 CTNNA1P35221 906 aaKnown RBP9.65□□□□□ -0.86
SCFD1-220ENST00000556486 MARCKSL1P49006 195 aa9.65□□□□□ -0.86
SCFD1-220ENST00000556486 KCNK10P57789 538 aa9.65□□□□□ -0.86
SCFD1-220ENST00000556486 MYBPC3Q14896 1274 aa9.65□□□□□ -0.86
SCFD1-220ENST00000556486 NCF4Q15080 339 aa9.65□□□□□ -0.86
SCFD1-220ENST00000556486 DCAF10Q5QP82 559 aa9.65□□□□□ -0.86
SCFD1-220ENST00000556486 C1orf189Q5VU69 101 aa9.65□□□□□ -0.86
SCFD1-220ENST00000556486 YOD1Q5VVQ6 348 aaPredicted RBP9.65□□□□□ -0.86
SCFD1-220ENST00000556486 MLIPQ5VWP3 458 aa9.65□□□□□ -0.86
SCFD1-220ENST00000556486 DENND5AQ6IQ26 1287 aa9.65□□□□□ -0.86
SCFD1-220ENST00000556486 Q6ZS92 163 aa9.65□□□□□ -0.86
SCFD1-220ENST00000556486 DET1Q7L5Y6 550 aa9.65□□□□□ -0.86
SCFD1-220ENST00000556486 RAB43Q86YS6 212 aa9.65□□□□□ -0.86
SCFD1-220ENST00000556486 SCUBE1Q8IWY4 988 aa9.65□□□□□ -0.86
SCFD1-220ENST00000556486 CFAP206Q8IYR0 622 aa9.65□□□□□ -0.86
SCFD1-220ENST00000556486 AFAP1L2Q8N4X5 818 aa9.65□□□□□ -0.86
SCFD1-220ENST00000556486 CLEC1AQ8NC01 280 aa9.65□□□□□ -0.86
SCFD1-220ENST00000556486 OR4E2Q8NGC2 313 aa9.65□□□□□ -0.86
SCFD1-220ENST00000556486 LCN9Q8WX39 176 aa9.65□□□□□ -0.86
SCFD1-220ENST00000556486 KRT35Q92764 455 aa9.65□□□□□ -0.86
SCFD1-220ENST00000556486 DCUN1D1Q96GG9 259 aa9.65□□□□□ -0.86
SCFD1-220ENST00000556486 TRAPPC9Q96Q05 1148 aa9.65□□□□□ -0.86
SCFD1-220ENST00000556486 BARD1Q99728 777 aaKnown RBP9.65□□□□□ -0.86
SCFD1-220ENST00000556486 AARSD1Q9BTE6 412 aaKnown RBP9.65□□□□□ -0.86
SCFD1-220ENST00000556486 FICDQ9BVA6 458 aa9.65□□□□□ -0.86
SCFD1-220ENST00000556486 SLC7A5P2Q9GIP4 190 aa9.65□□□□□ -0.86
SCFD1-220ENST00000556486 GOLPH3Q9H4A6 298 aa9.65□□□□□ -0.86
SCFD1-220ENST00000556486 MVB12BQ9H7P6 319 aa9.65□□□□□ -0.86
SCFD1-220ENST00000556486 COG4Q9H9E3 785 aa9.65□□□□□ -0.86
SCFD1-220ENST00000556486 VPS37BQ9H9H4 285 aa9.65□□□□□ -0.86
SCFD1-220ENST00000556486 C5AR2Q9P296 337 aa9.65□□□□□ -0.86
SCFD1-220ENST00000556486 SH3BGRL2Q9UJC5 107 aa9.65□□□□□ -0.86
SCFD1-220ENST00000556486 HIF3AQ9Y2N7 669 aa9.65□□□□□ -0.86
SCFD1-220ENST00000556486 PTRH2Q9Y3E5 179 aaKnown RBP9.65□□□□□ -0.86
SCFD1-220ENST00000556486 MYO7BQ6PIF6 2116 aa9.65□□□□□ -0.86
SCFD1-220ENST00000556486 NUP210LQ5VU65 1888 aa9.64□□□□□ -0.87
SCFD1-220ENST00000556486 CCDC78A2IDD5 438 aa9.64□□□□□ -0.87
SCFD1-220ENST00000556486 AKR1B15C9JRZ8 316 aaPredicted RBP9.64□□□□□ -0.87
SCFD1-220ENST00000556486 BTN3A3O00478 584 aa9.64□□□□□ -0.87
SCFD1-220ENST00000556486 BTN3A1O00481 513 aa9.64□□□□□ -0.87
SCFD1-220ENST00000556486 PJA2O43164 708 aa9.64□□□□□ -0.87
SCFD1-220ENST00000556486 KLF7O75840 302 aaPredicted RBP9.64□□□□□ -0.87
SCFD1-220ENST00000556486 HBQ1P09105 142 aa9.64□□□□□ -0.87
SCFD1-220ENST00000556486 ST6GAL1P15907 406 aa9.64□□□□□ -0.87
SCFD1-220ENST00000556486 POLR2CP19387 275 aaPredicted RBP9.64□□□□□ -0.87
SCFD1-220ENST00000556486 ITGALP20701 1170 aa9.64□□□□□ -0.87
SCFD1-220ENST00000556486 CYP2A7P20853 494 aa9.64□□□□□ -0.87
SCFD1-220ENST00000556486 CDH3P22223 829 aa9.64□□□□□ -0.87
SCFD1-220ENST00000556486 ALAS2P22557 587 aa9.64□□□□□ -0.87
SCFD1-220ENST00000556486 MAGEA1P43355 309 aa9.64□□□□□ -0.87
SCFD1-220ENST00000556486 PREPP48147 710 aa9.64□□□□□ -0.87
SCFD1-220ENST00000556486 LMAN1P49257 510 aa9.64□□□□□ -0.87
SCFD1-220ENST00000556486 CDC16Q13042 620 aa9.64□□□□□ -0.87
SCFD1-220ENST00000556486 BOP1Q14137 746 aaKnown RBP9.64□□□□□ -0.87
SCFD1-220ENST00000556486 ANKRD20A2Q5SQ80 823 aa9.64□□□□□ -0.87
SCFD1-220ENST00000556486 ANKRD20A1Q5TYW2 823 aa9.64□□□□□ -0.87
SCFD1-220ENST00000556486 ANKRD20A3Q5VUR7 823 aa9.64□□□□□ -0.87
SCFD1-220ENST00000556486 SARM1Q6SZW1 724 aa9.64□□□□□ -0.87
SCFD1-220ENST00000556486 DAAM2Q86T65 1068 aa9.64□□□□□ -0.87
SCFD1-220ENST00000556486 CCDC50Q8IVM0 306 aa9.64□□□□□ -0.87
SCFD1-220ENST00000556486 MCATQ8IVS2 390 aaKnown RBP9.64□□□□□ -0.87
SCFD1-220ENST00000556486 CDKL3Q8IVW4 592 aaPredicted RBP9.64□□□□□ -0.87
SCFD1-220ENST00000556486 CCDC170Q8IYT3 715 aa9.64□□□□□ -0.87
SCFD1-220ENST00000556486 LILRA3Q8N6C8 439 aaPredicted RBP9.64□□□□□ -0.87
SCFD1-220ENST00000556486 OR13C4Q8NGS5 318 aa9.64□□□□□ -0.87
SCFD1-220ENST00000556486 ACTL9Q8TC94 416 aa9.64□□□□□ -0.87
SCFD1-220ENST00000556486 HAUS1Q96CS2 278 aa9.64□□□□□ -0.87
SCFD1-220ENST00000556486 SPATA13Q96N96 652 aa9.64□□□□□ -0.87
SCFD1-220ENST00000556486 IP6K3Q96PC2 410 aa9.64□□□□□ -0.87
SCFD1-220ENST00000556486 C17orf62Q9BQA9 187 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms