RNA–Protein interactions for RNA: ENST00000554928.1

SYNE2-214, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 3

Gene SYNE2, Length 1,048 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-214ENST00000554928 CMC1Q7Z7K0 106 aa11.89□□□□□ -0.51
SYNE2-214ENST00000554928 PPP1R3BQ86XI6 285 aa11.89□□□□□ -0.51
SYNE2-214ENST00000554928 CARFQ8N187 725 aa11.89□□□□□ -0.51
SYNE2-214ENST00000554928 MYO1HQ8N1T3 1032 aa11.89□□□□□ -0.51
SYNE2-214ENST00000554928 DNAJC22Q8N4W6 341 aa11.89□□□□□ -0.51
SYNE2-214ENST00000554928 OR2L3Q8NG85 312 aa11.89□□□□□ -0.51
SYNE2-214ENST00000554928 MAGEC3Q8TD91 643 aa11.89□□□□□ -0.51
SYNE2-214ENST00000554928 CDKL2Q92772 493 aa11.89□□□□□ -0.51
SYNE2-214ENST00000554928 TEFMQ96QE5 360 aaKnown RBP11.89□□□□□ -0.51
SYNE2-214ENST00000554928 RAB11FIP5Q9BXF6 653 aa11.89□□□□□ -0.51
SYNE2-214ENST00000554928 SLC12A9Q9BXP2 914 aa11.89□□□□□ -0.51
SYNE2-214ENST00000554928 PDE7BQ9NP56 450 aa11.89□□□□□ -0.51
SYNE2-214ENST00000554928 NSMCE4AQ9NXX6 385 aa11.89□□□□□ -0.51
SYNE2-214ENST00000554928 STOX2Q9P2F5 926 aaPredicted RBP11.89□□□□□ -0.51
SYNE2-214ENST00000554928 TAC3Q9UHF0 121 aa11.89□□□□□ -0.51
SYNE2-214ENST00000554928 LNPEPQ9UIQ6 1025 aa11.89□□□□□ -0.51
SYNE2-214ENST00000554928 PCDHB11Q9Y5F2 797 aa11.89□□□□□ -0.51
SYNE2-214ENST00000554928 ESPNB1AK53 854 aa11.88□□□□□ -0.51
SYNE2-214ENST00000554928 ZBTB14O43829 449 aa11.88□□□□□ -0.51
SYNE2-214ENST00000554928 KDM1AO60341 852 aa11.88□□□□□ -0.51
SYNE2-214ENST00000554928 CTSVO60911 334 aa11.88□□□□□ -0.51
SYNE2-214ENST00000554928 SNRNP200O75643 2136 aaKnown RBP11.88□□□□□ -0.51
SYNE2-214ENST00000554928 CD82P27701 267 aa11.88□□□□□ -0.51
SYNE2-214ENST00000554928 DLG1Q12959 904 aa11.88□□□□□ -0.51
SYNE2-214ENST00000554928 USP10Q14694 798 aaKnown RBP11.88□□□□□ -0.51
SYNE2-214ENST00000554928 ZKSCAN8Q15776 578 aaPredicted RBP11.88□□□□□ -0.51
SYNE2-214ENST00000554928 PPP1R3AQ16821 1122 aa11.88□□□□□ -0.51
SYNE2-214ENST00000554928 C18orf21Q32NC0 220 aaPredicted RBP11.88□□□□□ -0.51
SYNE2-214ENST00000554928 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.88□□□□□ -0.51
SYNE2-214ENST00000554928 FIGLAQ6QHK4 219 aa11.88□□□□□ -0.51
SYNE2-214ENST00000554928 SYTL1Q8IYJ3 562 aa11.88□□□□□ -0.51
SYNE2-214ENST00000554928 CACNA2D3Q8IZS8 1091 aa11.88□□□□□ -0.51
SYNE2-214ENST00000554928 SMPDL3AQ92484 453 aa11.88□□□□□ -0.51
SYNE2-214ENST00000554928 DPH1Q9BZG8 443 aa11.88□□□□□ -0.51
SYNE2-214ENST00000554928 FAM129AQ9BZQ8 928 aa11.88□□□□□ -0.51
SYNE2-214ENST00000554928 ATG10Q9H0Y0 220 aa11.88□□□□□ -0.51
SYNE2-214ENST00000554928 GPAMQ9HCL2 828 aa11.88□□□□□ -0.51
SYNE2-214ENST00000554928 CUEDC1Q9NWM3 386 aaPredicted RBP11.88□□□□□ -0.51
SYNE2-214ENST00000554928 UTP6Q9NYH9 597 aaKnown RBP11.88□□□□□ -0.51
SYNE2-214ENST00000554928 CAMSAP3Q9P1Y5 1249 aaPredicted RBP11.88□□□□□ -0.51
SYNE2-214ENST00000554928 IL17BQ9UHF5 180 aa11.88□□□□□ -0.51
SYNE2-214ENST00000554928 MRPS18BQ9Y676 258 aaKnown RBP11.88□□□□□ -0.51
SYNE2-214ENST00000554928 CACNA1BQ00975 2339 aa11.88□□□□□ -0.51
SYNE2-214ENST00000554928 PTPRQQ9UMZ3 2332 aa11.87□□□□□ -0.51
SYNE2-214ENST00000554928 SCRG1O75711 98 aa11.87□□□□□ -0.51
SYNE2-214ENST00000554928 C8GP07360 202 aa11.87□□□□□ -0.51
SYNE2-214ENST00000554928 LIFP15018 202 aa11.87□□□□□ -0.51
SYNE2-214ENST00000554928 MAP4P27816 1152 aaKnown RBP11.87□□□□□ -0.51
SYNE2-214ENST00000554928 TBPL1P62380 186 aa11.87□□□□□ -0.51
SYNE2-214ENST00000554928 CXADRP78310 365 aa11.87□□□□□ -0.51
SYNE2-214ENST00000554928 POU4F1Q01851 419 aa11.87□□□□□ -0.51
SYNE2-214ENST00000554928 GPS2Q13227 327 aa11.87□□□□□ -0.51
SYNE2-214ENST00000554928 SP140Q13342 867 aa11.87□□□□□ -0.51
SYNE2-214ENST00000554928 SLMAPQ14BN4 828 aa11.87□□□□□ -0.51
SYNE2-214ENST00000554928 TSNQ15631 228 aaKnown RBP11.87□□□□□ -0.51
SYNE2-214ENST00000554928 UAP1Q16222 522 aaPredicted RBP11.87□□□□□ -0.51
SYNE2-214ENST00000554928 TMTC4Q5T4D3 741 aa11.87□□□□□ -0.51
SYNE2-214ENST00000554928 GRTP1Q5TC63 336 aa11.87□□□□□ -0.51
SYNE2-214ENST00000554928 FAM199XQ6PEV8 388 aaPredicted RBP11.87□□□□□ -0.51
SYNE2-214ENST00000554928 TMEM151BQ8IW70 566 aa11.87□□□□□ -0.51
SYNE2-214ENST00000554928 IFT20Q8IY31 132 aa11.87□□□□□ -0.51
SYNE2-214ENST00000554928 NLGN4XQ8N0W4 816 aa11.87□□□□□ -0.51
SYNE2-214ENST00000554928 DTWD1Q8N5C7 304 aa11.87□□□□□ -0.51
SYNE2-214ENST00000554928 NLGN4YQ8NFZ3 816 aaPredicted RBP11.87□□□□□ -0.51
SYNE2-214ENST00000554928 TCTN2Q96GX1 697 aa11.87□□□□□ -0.51
SYNE2-214ENST00000554928 PDLIM5Q96HC4 596 aaKnown RBP11.87□□□□□ -0.51
SYNE2-214ENST00000554928 ZPBPQ9BS86 351 aa11.87□□□□□ -0.51
SYNE2-214ENST00000554928 DPH7Q9BTV6 452 aa11.87□□□□□ -0.51
SYNE2-214ENST00000554928 FUT8Q9BYC5 575 aa11.87□□□□□ -0.51
SYNE2-214ENST00000554928 TXLNGYQ9BZA5 131 aa11.87□□□□□ -0.51
SYNE2-214ENST00000554928 EPB41L4BQ9H329 900 aa11.87□□□□□ -0.51
SYNE2-214ENST00000554928 PRORYQ9H606 182 aa11.87□□□□□ -0.51
SYNE2-214ENST00000554928 ACSS3Q9H6R3 686 aa11.87□□□□□ -0.51
SYNE2-214ENST00000554928 ANKZF1Q9H8Y5 726 aa11.87□□□□□ -0.51
SYNE2-214ENST00000554928 PARVBQ9HBI1 364 aa11.87□□□□□ -0.51
SYNE2-214ENST00000554928 STARD5Q9NSY2 213 aa11.87□□□□□ -0.51
SYNE2-214ENST00000554928 TXNDC16Q9P2K2 825 aa11.87□□□□□ -0.51
SYNE2-214ENST00000554928 ITPR1Q14643 2758 aa11.86□□□□□ -0.51
SYNE2-214ENST00000554928 SPTBP11277 2137 aa11.86□□□□□ -0.51
SYNE2-214ENST00000554928 LOC105369274A0A096LPK9 316 aa11.86□□□□□ -0.51
SYNE2-214ENST00000554928 LOC102723532A0A0G2JNH3 316 aa11.86□□□□□ -0.51
SYNE2-214ENST00000554928 TERTO14746 1132 aaKnown RBP11.86□□□□□ -0.51
SYNE2-214ENST00000554928 SLC16A5O15375 505 aa11.86□□□□□ -0.51
SYNE2-214ENST00000554928 MED26O95402 600 aa11.86□□□□□ -0.51
SYNE2-214ENST00000554928 GUCA1CO95843 209 aa11.86□□□□□ -0.51
SYNE2-214ENST00000554928 SLC35E2BP0CK96 405 aa11.86□□□□□ -0.51
SYNE2-214ENST00000554928 CD1DP15813 335 aa11.86□□□□□ -0.51
SYNE2-214ENST00000554928 CYP2A7P20853 494 aa11.86□□□□□ -0.51
SYNE2-214ENST00000554928 RPA3P35244 121 aaPredicted RBP11.86□□□□□ -0.51
SYNE2-214ENST00000554928 SPRP35270 261 aaPredicted RBP11.86□□□□□ -0.51
SYNE2-214ENST00000554928 KCNC1P48547 511 aa11.86□□□□□ -0.51
SYNE2-214ENST00000554928 CSRP3P50461 194 aa11.86□□□□□ -0.51
SYNE2-214ENST00000554928 SNRPNP63162 240 aaKnown RBP11.86□□□□□ -0.51
SYNE2-214ENST00000554928 CYP4F2P78329 520 aa11.86□□□□□ -0.51
SYNE2-214ENST00000554928 IRF9Q00978 393 aa11.86□□□□□ -0.51
SYNE2-214ENST00000554928 NAE1Q13564 534 aa11.86□□□□□ -0.51
SYNE2-214ENST00000554928 ARHGAP19Q14CB8 494 aa11.86□□□□□ -0.51
SYNE2-214ENST00000554928 OR4D1Q15615 310 aa11.86□□□□□ -0.51
SYNE2-214ENST00000554928 MANEAQ5SRI9 462 aa11.86□□□□□ -0.51
SYNE2-214ENST00000554928 ARHGAP40Q5TG30 622 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms